RchiOBHm_Chr4g0386821

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Reverse (-)
2175979 .. 2178844
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36017

Sequence Viewer

Length: 822 bp
ATGTGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAATATACACACTGCATTGATATTGTTGTTTCGAGCTCATACACAGGGGGTCACAAACATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGATGGCTTTTTGTGTGGAAAATTTCTGAAGGTCCAGATGAAGAAGGCACGCCACAAATCACAGGAAAGATTGTTATTGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCGTCCACGAGGTTGTTGGCACTGTCATAAACAAGACGTTTTGGCTGTTGGGGTTGGGAAGCGTGTTCTACGAATTGATACTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATCCTATTAAGTGTCCTGTTGAAAACCTTATTGATGGGGTCCAATTTGTTGGTAAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCTGGCTGGTTTCTGCTTCTATGGATGGAACTGGCCCACTTAATCGGGAAGTGAAGATCTGGTCCTCAGCGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAGTCATGGAAGTGTACCCAGACCTTAGAGTTAAAGAGCTCTGCTCAATCTCGAGTTGAGGATGCATTCTTTAATCAAGTCATAGCATTGTTACAAGCTGGCCTTCTTTTACTTGCAAATTCTAAGAAGAATGCTATATATGGCATGCACTTAGACTTTGGTGGTGAGCCAGCATTTACAATGCCTATTATGAGCTTTACTGGGACAAATATATCACCTCATGGTGAACAAATCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

273

Amino Acids

29.87

Weight (kDa)

5.37

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 9 - 113 4.6e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 371, 384
AcsI RAATTY 2 cut(s) 168, 700
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 598
AgsI TTSAA 4 cut(s) 16, 40, 233, 398
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 5 cut(s) 74, 254, 621, 680, 777
AluI AGCT 5 cut(s) 74, 254, 621, 680, 777
Alw21I GWGCWC 2 cut(s) 76, 623
AlwI GGATC 2 cut(s) 371, 384
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 2 cut(s) 511, 682
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 2 cut(s) 168, 700
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 4 cut(s) 179, 415, 512, 540
AsuHPI GGTGA 7 cut(s) 113, 254, 368, 457, 758, 789, 818
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 3 cut(s) 179, 415, 540
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 2 cut(s) 76, 623
BauI CACGAG 1 cut(s) 264
Bbv12I GWGCWC 2 cut(s) 76, 623
BbvCI CCTCAGC 2 cut(s) 372, 544
BbvI GCAGC 1 cut(s) 552
BccI CCATC 4 cut(s) 144, 404, 431, 497
BciT130I CCWGG 1 cut(s) 481
BfaI CTAG 1 cut(s) 132
BglII AGATCT 1 cut(s) 534
BisI GCNGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 3 cut(s) 179, 415, 540
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 4 cut(s) 179, 415, 512, 540
BmiI GGNNCC 2 cut(s) 378, 416
BmrFI CCNGG 1 cut(s) 481
BmrI ACTGGG 2 cut(s) 567, 792
BmsI GCATC 2 cut(s) 568, 634
BmuI ACTGGG 2 cut(s) 567, 792
BplI GAGNNNNNCTC 2 cut(s) 610, 642
Bpu10I CCTNAGC 2 cut(s) 372, 544
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 514, 573, 787
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 5 cut(s) 121, 155, 477, 508, 649
BseMII CTCAG 3 cut(s) 363, 558, 573
BseNI ACTGG 3 cut(s) 514, 573, 787
BseXI GCAGC 1 cut(s) 552
BshFI GGCC 2 cut(s) 513, 684
BsiHKAI GWGCWC 2 cut(s) 76, 623
BsiHKCI CYCGRG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 347, 799
BsmFI GGGAC 2 cut(s) 347, 799
BsmI GAATGC 2 cut(s) 647, 718
BsnI GGCC 2 cut(s) 513, 684
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 76, 623
Bsp143I GATC 2 cut(s) 376, 534
BspANI GGCC 2 cut(s) 513, 684
BspCNI CTCAG 3 cut(s) 364, 557, 574
BspLI GGNNCC 2 cut(s) 378, 416
BspPI GGATC 2 cut(s) 371, 384
BsrI ACTGG 3 cut(s) 514, 573, 787
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 376, 534
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 197, 563, 682, 728, 753
BstDEI CTNAG 6 cut(s) 372, 544, 582, 607, 705, 733
BstF5I GGATG 5 cut(s) 121, 155, 477, 508, 649
BstKTI GATC 2 cut(s) 379, 537
BstMBI GATC 2 cut(s) 376, 534
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 479
BstV1I GCAGC 1 cut(s) 552
BstX2I RGATCY 2 cut(s) 376, 534
BstXI CCANNNNNNTGG 2 cut(s) 425, 484
BstYI RGATCY 2 cut(s) 376, 534
BsuRI GGCC 2 cut(s) 513, 684
BtsCI GGATG 5 cut(s) 121, 155, 477, 508, 649
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 277, 580
Cac8I GCNNGC 5 cut(s) 197, 563, 682, 728, 753
Cfr13I GGNCC 4 cut(s) 179, 415, 512, 540
Csp6I GTAC 1 cut(s) 597
CviAII CATG 5 cut(s) 97, 434, 588, 727, 803
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 6 cut(s) 372, 544, 582, 607, 705, 733
DpnI GATC 2 cut(s) 378, 536
DpnII GATC 2 cut(s) 376, 534
Ecl136II GAGCTC 2 cut(s) 74, 621
Eco24I GRGCYC 2 cut(s) 76, 623
Eco47I GGWCC 3 cut(s) 179, 415, 540
Eco53kI GAGCTC 2 cut(s) 74, 621
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 633
EcoICRI GAGCTC 2 cut(s) 74, 621
EcoRII CCWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 76, 623
FaeI CATG 5 cut(s) 100, 437, 591, 730, 806
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 669, 701
FaqI GGGAC 2 cut(s) 347, 799
FatI CATG 5 cut(s) 96, 433, 587, 726, 802
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 5 cut(s) 128, 162, 484, 515, 656
FriOI GRGCYC 2 cut(s) 76, 623
Fsp4HI GCNGC 1 cut(s) 566
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 566
HaeIII GGCC 2 cut(s) 513, 684
Hin1II CATG 5 cut(s) 100, 437, 591, 730, 806
HinfI GANTC 1 cut(s) 584
HphI GGTGA 7 cut(s) 113, 254, 368, 457, 758, 789, 818
Hpy166II GTNNAC 5 cut(s) 121, 263, 431, 597, 809
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 182, 524, 633
Hpy8I GTNNAC 5 cut(s) 121, 263, 431, 597, 809
HpyAV CCTTC 6 cut(s) 140, 170, 185, 375, 551, 695
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 5 cut(s) 53, 350, 647, 698, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 6 cut(s) 372, 544, 582, 607, 705, 733
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 5 cut(s) 100, 437, 591, 730, 806
Kzo9I GATC 2 cut(s) 376, 534
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 2 cut(s) 568, 634
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 88, 445, 672
MalI GATC 2 cut(s) 378, 536
MboI GATC 2 cut(s) 376, 534
MboII GAAGA 4 cut(s) 200, 544, 566, 721
MflI RGATCY 2 cut(s) 376, 534
MhlI GDGCHC 2 cut(s) 76, 623
MluCI AATT 4 cut(s) 168, 330, 419, 700
MlyI GAGTC 1 cut(s) 593
MnlI CCTC 8 cut(s) 106, 238, 260, 367, 436, 553, 634, 810
Mph1103I ATGCAT 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 4 cut(s) 384, 519, 614, 654
MslI CAYNNNNRTG 2 cut(s) 95, 592
MspR9I CCNGG 1 cut(s) 481
Mva1269I GAATGC 2 cut(s) 647, 718
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 376, 534
NlaIII CATG 5 cut(s) 100, 437, 591, 730, 806
NlaIV GGNNCC 2 cut(s) 378, 416
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 88, 445
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 730
PaeI GCATGC 1 cut(s) 730
PaeR7I CTCGAG 1 cut(s) 633
PctI GAATGC 2 cut(s) 647, 718
PdmI GAANNNNTTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 567
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp124BI GAGCTC 2 cut(s) 76, 623
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 378, 416
PspPI GGNCC 4 cut(s) 179, 415, 512, 540
PsuI RGATCY 2 cut(s) 376, 534
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 2 cut(s) 95, 592
SacI GAGCTC 2 cut(s) 76, 623
SaqAI TTAA 4 cut(s) 384, 519, 614, 654
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 2 cut(s) 376, 534
Sau96I GGNCC 4 cut(s) 179, 415, 512, 540
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 481
SduI GDGCHC 2 cut(s) 76, 623
SfaNI GCATC 2 cut(s) 568, 634
Sfr274I CTCGAG 1 cut(s) 633
SinI GGWCC 3 cut(s) 179, 415, 540
SlaI CTCGAG 1 cut(s) 633
SmiMI CAYNNNNRTG 2 cut(s) 95, 592
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
SphI GCATGC 1 cut(s) 730
Sse9I AATT 4 cut(s) 168, 330, 419, 700
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 132
SstI GAGCTC 2 cut(s) 76, 623
StyD4I CCNGG 1 cut(s) 479
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 297
TaqI TCGA 2 cut(s) 70, 634
TasI AATT 4 cut(s) 168, 330, 419, 700
Tru1I TTAA 4 cut(s) 384, 519, 614, 654
Tru9I TTAA 4 cut(s) 384, 519, 614, 654
TscAI CASTG 3 cut(s) 55, 284, 580
TseFI GTSAC 2 cut(s) 88, 445
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 2 cut(s) 88, 445
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 3 cut(s) 55, 284, 580
VpaK11BI GGWCC 3 cut(s) 179, 415, 540
XapI RAATTY 2 cut(s) 168, 700
XceI RCATGY 1 cut(s) 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.