pycom11g08470

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000324
Physical Location & Seq
Reverse (-)
6574830 .. 6576342
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08470.4

Sequence Viewer

Length: 315 bp
ATGTTGATTTTAGCTTTCGTCTATCTGGAAGCTATTAATTCTGCATCATCGGTGACTCAAACCTTAAGCGGAGAAGTGGCTGACGGTCAACGTAAGCTCATAGCTCTTGCAGCTGCACGAGGAAACTCAAGTGCAGTAAATCCTCTGGTCACACAATTCACTAATGGACCTTTGGGTGGTCTTCATGAGAAGGTTTCTTCGATCTTAATTTGTAGATTCCGTGCTGCTGCGGTATATTTAAATGCTGCTGTCCTCCACTGTTTGAGCCTGGGCCTCCTCCACCACCATTGTGCGGGAGTGTGTGAAATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

105

Amino Acids

10.89

Weight (kDa)

7.7

Isoelectric Point (pI)

8.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 69, 230, 293
AfiI CCNNNNNNNGG 2 cut(s) 176, 292
AflII CTTAAG 1 cut(s) 64
AjnI CCWGG 1 cut(s) 267
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 5 cut(s) 14, 32, 97, 104, 113
AluI AGCT 5 cut(s) 14, 32, 97, 104, 113
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 5 cut(s) 110, 113, 224, 227, 245
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 167, 271
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 5 cut(s) 100, 122, 211, 214, 232
BciT130I CCWGG 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 64
BisI GCNGC 5 cut(s) 111, 114, 225, 228, 246
BlsI GCNGC 5 cut(s) 112, 115, 226, 229, 247
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 167, 271
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 292
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 176, 292
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 5 cut(s) 100, 122, 211, 214, 232
BsgI GTGCAG 2 cut(s) 99, 153
BshFI GGCC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 176, 292
BsnI GGCC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 201
BspACI CCGC 3 cut(s) 69, 230, 293
BspANI GGCC 1 cut(s) 273
BspHI TCATGA 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 86, 260
BstAFI CTTAAG 1 cut(s) 64
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 5 cut(s) 100, 122, 211, 214, 232
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 256
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 167, 271
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 14, 32, 80, 97, 104, 113, 267, 273
CviKI_1 RGCY 8 cut(s) 14, 32, 80, 97, 104, 113, 267, 273
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
DraI TTTAAA 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 188
FaiI YATR 3 cut(s) 101, 186, 235
FatI CATG 1 cut(s) 184
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 5 cut(s) 111, 114, 225, 228, 246
Fsp4HI GCNGC 5 cut(s) 111, 114, 225, 228, 246
GluI GCNGC 5 cut(s) 111, 114, 225, 228, 246
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HinfI GANTC 2 cut(s) 55, 216
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 26, 185
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 86, 260
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 44, 110, 116, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 201
LpnPI CCDG 4 cut(s) 11, 131, 254, 281
Lsp1109I GCAGC 5 cut(s) 100, 122, 211, 214, 232
LweI GCATC 1 cut(s) 53
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 52, 148
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 2 cut(s) 173, 189
MluCI AATT 3 cut(s) 37, 155, 207
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 5 cut(s) 113, 153, 263, 284, 287
MseI TTAA 4 cut(s) 36, 65, 206, 239
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 188
NmuCI GTSAC 2 cut(s) 52, 148
OliI CACNNNNGTG 1 cut(s) 288
PagI TCATGA 1 cut(s) 184
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 5 cut(s) 112, 115, 226, 229, 247
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspPI GGNCC 2 cut(s) 167, 271
PvuII CAGCTG 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 4 cut(s) 36, 65, 206, 239
SatI GCNGC 5 cut(s) 111, 114, 225, 228, 246
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 2 cut(s) 167, 271
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 269
SetI ASST 9 cut(s) 16, 34, 65, 94, 99, 106, 115, 172, 195
SfaNI GCATC 1 cut(s) 53
SinI GGWCC 1 cut(s) 167
SmiI ATTTAAAT 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 64, 127
SmoI CTYRAG 2 cut(s) 64, 127
Sse9I AATT 3 cut(s) 37, 155, 207
SsiI CCGC 3 cut(s) 69, 230, 293
StyD4I CCNGG 1 cut(s) 267
SwaI ATTTAAAT 1 cut(s) 240
TaaI ACNGT 2 cut(s) 86, 260
TaiI ACGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 200
TasI AATT 3 cut(s) 37, 155, 207
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 4 cut(s) 36, 65, 206, 239
Tru9I TTAA 4 cut(s) 36, 65, 206, 239
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 2 cut(s) 52, 148
TseI GCWGC 5 cut(s) 110, 113, 224, 227, 245
Tsp45I GTSAC 2 cut(s) 52, 148
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 263
Vha464I CTTAAG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.