Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000324

Physical Location & Seq

Genomic Coordinates Forward (+)

8495008 .. 8499557

Gene Structure 4550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

ATGGCGTCCCCCGGAAACCCCAATCCGCCGCCGCCGCAGCAGCAGCAGCAGCCCTTCGACATGGCCAAGCTTCCCAATCCCTCCGGCCTCTTATCCTCCCCCTCTGGGCCCTACTCCTACCCTCCCCAAACGGCGCCGTATCACCAGCAGCAATTCCAGTACCAGCACCACCCTCAGCCTCATCCTCACAACCACCCCCAAATTCCTTACCCTCAAGACCACCAGCTGCTTCAACAGCGGTCGCTCTCCTTTCCCATCCCGCCCCTGGCTCCTGGTAATTACAACATTGCCACCGCCGCCGCCGCCGCCGCCTCCAACCCCGGAAACGCCACCACCACCAACCCCAATTCCGGCGCCCGAATCATGGCCCTGCTCGGTGCTCCTTCCTCCAGTCTAGAAATGGCGCCTCTGCCGGAGTTGTCAGTCCCCGGCTCTGGCGGGGTTTCGATGCTGCCCACTCTTCCTATGGGGATTCCACCCTCCCCGGCTCGAATGCCGAGCAATAAGCTGCCGAAGGGCAGGCATTTGCTTGGGGATAGCGTGGTTTACGATGTGGATGTTAGGTTGCCCGGGGAGTTTCAGCCGCAGCTGGAAGTTACCCCCATTACTAAGTATGGTTCGGATCCTCAGCTGGTGTTGGGCCGCCAAATTGCGGTTAATAAGTCGTATATATGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAACATACACACTGCATTGAGATCTTTGTTTCGAGCTCATACACAGAGGGTCACAGACATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGACGGCTTTTTGTATGGAAAATTTCTGAAGGTCCAGATGAAGAAGGCACGCCACAAATCACAGGAAAGATTGTTATTGCCATTCAAATAGTTGGCGAGGGGGAAGCTGTTCATCCACGAGAGGTTTTGGTTGTTGGGATTGGGAAGCGTGTTCTACGAATTGATACTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATCCTATTAAGTGTCCTGTCGAAAAGCTTGTTGATGGGGTCCAATTTGTTGGTAAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCCGGCTGGTTTCTGCTTCTATGGATGGAACTATAAAGATCTGGGAAGATCGCAAGTCACAACCACTTTTAGTACTGAGACCCTATGATTGCCTTCCTGTTTATTCGTCTACATTTGTGACAGCTCCCAACAGACCTGATCACATCATACTTATAACAGTGGGCCCACTTAATCGGGAAGTGAAGATCTGGTCCTCAGCGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAGTCATGGAAATGTACCCAGACCTTAGAATTAAAGAGCTCTGCTCAACCTCGAGTCGAGGATGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTTTTACTTGCAAATGCTAAGAAGAATGCTATATATGCTGTGCACTTAGACTTTGGTGGTGAGCCAGCATCCACACGCATGGATTACATAGCAGAATTTACTGTTACAATGCCTATTTTGAGCTTTACTGGGACAAGTATATCACCTCATGGTGAACAAATCGTTCAGGTGTATTGTGTCCAAACACAAGCCATTCAACAGTATGCTTTGGACTTATCCAAGTGCTTACCTCCCCCATTGGAGAATTCAGGTTTGGAAAAGTCAGATTCCAGTGTTTCACATGATGCAACTGAGGCGGTGTCAACTAATTCAGCACCAAAACCAACCATACAAGCTACTAGTTCTGAGGGTGCAGCCTTGAGGTATCCTGTCCGCACTGCTTCGGTTGATCCTTCCAATTCAAAAGATATTACCACTTCGTCTATGGAATCAAAACCTGTTGCATCGGCACCGGAGATTAGTGATGCTGATGCTGTTTTTGTAGCATCACAACCTCTTCCTTTGAGTCCTAGGTTGTCAGGGAAACATTCTGGTTTAAGAAGCCCGACAGATGGCAGTGATCATGGTGGTGACCAACAAGTTAATGAGTACTCAGTTGACAGGCAGATGAATACTGCTCGTTCAAACTTGTCTGATATGCCTGCACTCGATGATGATGCGAGGAATGATGAGCAGAAAATTGCACAAGACGAAGTATCTAGTGTGCTCAATCCTCCTATTATGTTCAAACATCCAACCCATTTAATAACTCCTTCTGAGATTTTAATGGCTGCTTCATCCTCTGAGAATACAACTCCAATTGATAGCAACACTGAGGGGGATGCAAAAATCCAAGATGTTCTTGTTAACAGTGATGTGGGTAATCCTGAGGTGGAAGTTAAGGTTGTGGGTGAAACCAGATCTACTCAAATCGATGAATTTGTCTCTCAACGAGAACTCCAAAATGTTGTTTCAGAAAATAAGGAGAAGTTCTTTTGCTCCCAGGCATCAGATCTTGGAATTGAGATGGCCCGGGATTGCTGTGCAATATCATCTGAATCTTATATTACAGATGAAGCTCGGCAAGGTGATGGTGCCAGCATGTCAGAACCACTAGCCCAGCCTCATTCTGGAGAGGAAGACCAGGATCTCTCTACAAAAGATGTATCTGGGTCAGCTACTGCCACAACCACATCACAAACACCAAATGCAAAGTCGAGAAAACAGAAATGGAAAAATATGCAAGCATCAGGTCCATCTTCCCCATCACCAGGTGTGCTCAATGCAGTAGAGTCCTCCAATGAAGCAGGTGGGAGTTCAAGTCCCCCTCCGGAGAAGCTGCAATTCCTCAAATTATGGCCATGCAGGATACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ge1_WD40

Protein Analysis

938

Amino Acids

101.16

Weight (kDa)

5.21

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ge1_WD40	PF16529	199 - 284	3e-09	WD40 region of Ge1, enhancer of mRNA-decapping protein
Ge1_WD40	PF16529	344 - 503	7.7e-06	WD40 region of Ge1, enhancer of mRNA-decapping protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca	FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica	MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica	Prupe.6G032100_v2.0.a1
pyrus_communis	pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis	RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata	RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora	Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii	Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa	Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha	Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana	Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1277
AarI	CACCTGC	1 cut(s)	2738
Acc36I	ACCTGC	1 cut(s)	2738
AccB1I	GGYRCC	5 cut(s)	133, 353, 403, 1909, 2534
AccI	GTMKAC	1 cut(s)	1232
AccIII	TCCGGA	1 cut(s)	2770
AclWI	GGATC	6 cut(s)	617, 630, 1016, 1029, 1844, 2595
AcoI	YGGCCR	2 cut(s)	63, 2798
AcsI	RAATTY	5 cut(s)	201, 837, 1556, 1705, 2378
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	4 cut(s)	5, 134, 354, 404
AdeI	CACNNNGTG	1 cut(s)	2714
AfaI	GTAC	4 cut(s)	161, 1197, 1372, 2051
AfiI	CCNNNNNNNGG	9 cut(s)	105, 265, 350, 364, 434, 652, 2012, 2570, 2711
AgsI	TTSAA	9 cut(s)	233, 685, 709, 902, 1658, 1863, 2085, 2188, 2760
AhlI	ACTAGT	1 cut(s)	1799
AjnI	CCWGG	5 cut(s)	264, 271, 2442, 2583, 2710
AjuI	GAANNNNNNNTTGG	2 cut(s)	1697, 1729
Alw21I	GWGCWC	6 cut(s)	382, 745, 1397, 1506, 2169, 2721
Alw26I	GTCTC	2 cut(s)	1195, 2389
Alw44I	GTGCAC	1 cut(s)	1502
AlwI	GGATC	6 cut(s)	617, 630, 1016, 1029, 1844, 2595
AlwNI	CAGNNNCTG	1 cut(s)	2621
Ama87I	CYCGRG	3 cut(s)	569, 1407, 2472
Aor13HI	TCCGGA	1 cut(s)	2770
AoxI	GGCC	9 cut(s)	63, 85, 107, 366, 640, 1285, 1456, 2469, 2798
ApaI	GGGCCC	2 cut(s)	111, 1289
ApaLI	GTGCAC	1 cut(s)	1502
ApoI	RAATTY	5 cut(s)	201, 837, 1556, 1705, 2378
ArsI	GACNNNNNNTTYG	2 cut(s)	2639, 2671
Asp700I	GAANNNNTTC	1 cut(s)	924
AspA2I	CCTAGG	1 cut(s)	1970
AspLEI	GCGC	3 cut(s)	136, 356, 406
AsuC2I	CCSGG	9 cut(s)	12, 321, 429, 485, 570, 571, 1126, 2473, 2474
AvaI	CYCGRG	3 cut(s)	569, 1407, 2472
AvaII	GGWCC	4 cut(s)	848, 1060, 1314, 2693
AvrII	CCTAGG	1 cut(s)	1970
AxyI	CCTNAGG	1 cut(s)	2328
BaeGI	GKGCMC	3 cut(s)	111, 1289, 1506
BalI	TGGCCA	2 cut(s)	65, 2800
BamHI	GGATCC	2 cut(s)	622, 1021
BanI	GGYRCC	5 cut(s)	133, 353, 403, 1909, 2534
BanII	GRGCYC	4 cut(s)	111, 745, 1289, 1397
BauI	CACGAG	1 cut(s)	933
BbsI	GAAGAC	1 cut(s)	2586
Bbv12I	GWGCWC	6 cut(s)	382, 745, 1397, 1506, 2169, 2721
BbvCI	CCTCAGC	4 cut(s)	174, 627, 1017, 1318
BccI	CCATC	9 cut(s)	263, 1049, 1076, 1142, 2006, 2461, 2525, 2704, 2713
BceAI	ACGGC	3 cut(s)	121, 147, 836
BcgI	CGANNNNNNTGC	2 cut(s)	2099, 2133
BciT130I	CCWGG	5 cut(s)	266, 273, 2444, 2585, 2712
BciVI	GTATCC	2 cut(s)	1836, 2802
BclI	TGATCA	2 cut(s)	1261, 2020
BcnI	CCSGG	9 cut(s)	12, 321, 429, 485, 570, 571, 1126, 2473, 2474
BcoDI	GTCTC	2 cut(s)	1195, 2389
BcuI	ACTAGT	1 cut(s)	1799
BfaI	CTAG	6 cut(s)	395, 801, 1800, 1971, 2160, 2555
BfoI	RGCGCY	3 cut(s)	137, 357, 407
BfuAI	ACCTGC	1 cut(s)	2738
BfuI	GTATCC	2 cut(s)	1836, 2802
BglII	AGATCT	5 cut(s)	728, 1161, 1308, 2360, 2452
BlnI	CCTAGG	1 cut(s)	1970
BmcAI	AGTACT	2 cut(s)	1197, 2051
Bme18I	GGWCC	4 cut(s)	848, 1060, 1314, 2693
BmeT110I	CYCGRG	3 cut(s)	569, 1407, 2472
BmrI	ACTGGG	2 cut(s)	1341, 1599
BmuI	ACTGGG	2 cut(s)	1341, 1599
BpiI	GAAGAC	1 cut(s)	2586
BplI	GAGNNNNNCTC	2 cut(s)	1384, 1416
BpmI	CTGGAG	2 cut(s)	373, 2592
Bpu10I	CCTNAGC	4 cut(s)	174, 627, 1017, 1318
BpuEI	CTTGAG	2 cut(s)	198, 1840
BpuMI	CCSGG	9 cut(s)	12, 321, 429, 485, 570, 571, 1126, 2473, 2474
Bsa29I	ATCGAT	1 cut(s)	2373
BsaHI	GRCGYC	4 cut(s)	5, 134, 354, 404
BsaI	GGTCTC	1 cut(s)	1195
BsaWI	WCCGGW	2 cut(s)	1912, 2770
BsaXI	ACNNNNNCTCC	4 cut(s)	2382, 2412, 2746, 2776
Bsc4I	CCNNNNNNNGG	9 cut(s)	105, 265, 350, 364, 434, 652, 2012, 2570, 2711
Bse1I	ACTGG	5 cut(s)	157, 390, 1347, 1594, 1731
Bse21I	CCTNAGG	1 cut(s)	2328
Bse3DI	GCAATG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	2770
BseBI	CCWGG	5 cut(s)	266, 273, 2444, 2585, 2712
BseCI	ATCGAT	1 cut(s)	2373
BseLI	CCNNNNNNNGG	9 cut(s)	105, 265, 350, 364, 434, 652, 2012, 2570, 2711
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	5 cut(s)	157, 390, 1347, 1594, 1731
BseSI	GKGCMC	3 cut(s)	111, 1289, 1506
BseYI	CCCAGC	1 cut(s)	2559
BsgI	GTGCAG	2 cut(s)	1833, 2088
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	9 cut(s)	65, 87, 109, 368, 642, 1287, 1458, 2471, 2800
BshNI	GGYRCC	5 cut(s)	133, 353, 403, 1909, 2534
BshVI	ATCGAT	1 cut(s)	2373
BsiEI	CGRYCG	1 cut(s)	242
BsiHKAI	GWGCWC	6 cut(s)	382, 745, 1397, 1506, 2169, 2721
BsiHKCI	CYCGRG	3 cut(s)	569, 1407, 2472
BslFI	GGGAC	4 cut(s)	410, 992, 1606, 2748
BslI	CCNNNNNNNGG	9 cut(s)	105, 265, 350, 364, 434, 652, 2012, 2570, 2711
BsmAI	GTCTC	2 cut(s)	1195, 2389
BsmFI	GGGAC	4 cut(s)	410, 992, 1606, 2748
BsmI	GAATGC	3 cut(s)	498, 1421, 1492
BsnI	GGCC	9 cut(s)	65, 87, 109, 368, 642, 1287, 1458, 2471, 2800
Bso31I	GGTCTC	1 cut(s)	1195
BsoBI	CYCGRG	3 cut(s)	569, 1407, 2472
Bsp120I	GGGCCC	2 cut(s)	107, 1285
Bsp1286I	GDGCHC	8 cut(s)	111, 382, 745, 1289, 1397, 1506, 2169, 2721
Bsp13I	TCCGGA	1 cut(s)	2770
BspANI	GGCC	9 cut(s)	65, 87, 109, 368, 642, 1287, 1458, 2471, 2800
BspDI	ATCGAT	1 cut(s)	2373
BspEI	TCCGGA	1 cut(s)	2770
BspMI	ACCTGC	1 cut(s)	2738
BspPI	GGATC	6 cut(s)	617, 630, 1016, 1029, 1844, 2595
BspT107I	GGYRCC	5 cut(s)	133, 353, 403, 1909, 2534
BspTNI	GGTCTC	1 cut(s)	1195
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	5 cut(s)	157, 390, 1347, 1594, 1731
BssNI	GRCGYC	4 cut(s)	5, 134, 354, 404
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	1 cut(s)	1970
Bst2BI	CACGAG	1 cut(s)	933
Bst2UI	CCWGG	5 cut(s)	266, 273, 2444, 2585, 2712
Bst4CI	ACNGT	4 cut(s)	1282, 1564, 1662, 2312
Bst6I	CTCTTC	2 cut(s)	465, 1962
BstACI	GRCGYC	4 cut(s)	5, 134, 354, 404
BstC8I	GCNNGC	8 cut(s)	521, 866, 1337, 1456, 1527, 2103, 2539, 2685
BstEII	GGTNACC	1 cut(s)	2030
BstH2I	RGCGCY	3 cut(s)	137, 357, 407
BstHHI	GCGC	3 cut(s)	136, 356, 406
BstMAI	GTCTC	2 cut(s)	1195, 2389
BstMCI	CGRYCG	1 cut(s)	242
BstNI	CCWGG	5 cut(s)	266, 273, 2444, 2585, 2712
BstNSI	RCATGY	1 cut(s)	2545
BstPI	GGTNACC	1 cut(s)	2030
BstSLI	GKGCMC	3 cut(s)	111, 1289, 1506
BstV2I	GAAGAC	1 cut(s)	2586
BstX2I	RGATCY	8 cut(s)	622, 728, 1021, 1161, 1308, 2360, 2452, 2587
BstXI	CCANNNNNNTGG	3 cut(s)	1070, 1129, 1540
BstYI	RGATCY	8 cut(s)	622, 728, 1021, 1161, 1308, 2360, 2452, 2587
Bsu15I	ATCGAT	1 cut(s)	2373
Bsu36I	CCTNAGG	1 cut(s)	2328
BsuI	GTATCC	2 cut(s)	1836, 2802
BsuRI	GGCC	9 cut(s)	65, 87, 109, 368, 642, 1287, 1458, 2471, 2800
BsuTUI	ATCGAT	1 cut(s)	2373
BtsI	GCAGTG	3 cut(s)	717, 1836, 2023
BtsIMutI	CAGTG	8 cut(s)	717, 1287, 1354, 1738, 1836, 2023, 2271, 2317
BveI	ACCTGC	1 cut(s)	2738
Cac8I	GCNNGC	8 cut(s)	521, 866, 1337, 1456, 1527, 2103, 2539, 2685
CaiI	CAGNNNCTG	1 cut(s)	2621
CfoI	GCGC	3 cut(s)	136, 356, 406
Cfr9I	CCCGGG	2 cut(s)	569, 2472
ClaI	ATCGAT	1 cut(s)	2373
CsiI	ACCWGGT	1 cut(s)	2710
Csp6I	GTAC	4 cut(s)	160, 1196, 1371, 2050
CviQI	GTAC	4 cut(s)	160, 1196, 1371, 2050
DinI	GGCGCC	3 cut(s)	135, 355, 405
DraIII	CACNNNGTG	1 cut(s)	2714
EaeI	YGGCCR	2 cut(s)	63, 2798
Eam1104I	CTCTTC	2 cut(s)	465, 1962
EarI	CTCTTC	2 cut(s)	465, 1962
EciI	GGCGGA	1 cut(s)	15
Ecl136II	GAGCTC	2 cut(s)	743, 1395
Eco130I	CCWWGG	1 cut(s)	1970
Eco24I	GRGCYC	4 cut(s)	111, 745, 1289, 1397
Eco31I	GGTCTC	1 cut(s)	1195
Eco47I	GGWCC	4 cut(s)	848, 1060, 1314, 2693
Eco53kI	GAGCTC	2 cut(s)	743, 1395
Eco57I	CTGAAG	1 cut(s)	864
Eco81I	CCTNAGG	1 cut(s)	2328
Eco88I	CYCGRG	3 cut(s)	569, 1407, 2472
Eco91I	GGTNACC	1 cut(s)	2030
EcoICRI	GAGCTC	2 cut(s)	743, 1395
EcoO109I	RGGNCCY	1 cut(s)	108
EcoO65I	GGTNACC	1 cut(s)	2030
EcoRI	GAATTC	1 cut(s)	1705
EcoRII	CCWGG	5 cut(s)	264, 271, 2442, 2583, 2710
EcoT14I	CCWWGG	1 cut(s)	1970
EcoT22I	ATGCAT	1 cut(s)	1423
EcoT38I	GRGCYC	4 cut(s)	111, 745, 1289, 1397
EgeI	GGCGCC	3 cut(s)	135, 355, 405
EheI	GGCGCC	3 cut(s)	135, 355, 405
ErhI	CCWWGG	1 cut(s)	1970
FalI	AAGNNNNNCTT	6 cut(s)	807, 839, 1443, 1475, 2286, 2318
FaqI	GGGAC	4 cut(s)	410, 992, 1606, 2748
FauI	CCCGC	2 cut(s)	267, 431
FbaI	TGATCA	2 cut(s)	1261, 2020
FblI	GTMKAC	1 cut(s)	1232
FriOI	GRGCYC	4 cut(s)	111, 745, 1289, 1397
FspBI	CTAG	6 cut(s)	395, 801, 1800, 1971, 2160, 2555
GlaI	GCGC	3 cut(s)	135, 355, 405
GsaI	CCCAGC	1 cut(s)	2563
GsuI	CTGGAG	2 cut(s)	373, 2592
HaeII	RGCGCY	3 cut(s)	137, 357, 407
HaeIII	GGCC	9 cut(s)	65, 87, 109, 368, 642, 1287, 1458, 2471, 2800
HhaI	GCGC	3 cut(s)	136, 356, 406
Hin1I	GRCGYC	4 cut(s)	5, 134, 354, 404
Hin6I	GCGC	3 cut(s)	134, 354, 404
HinP1I	GCGC	3 cut(s)	134, 354, 404
HincII	GTYRAC	3 cut(s)	1764, 2059, 2308
HindII	GTYRAC	3 cut(s)	1764, 2059, 2308
HindIII	AAGCTT	2 cut(s)	68, 1046
HinfI	GANTC	9 cut(s)	360, 472, 1358, 1410, 1727, 1889, 1966, 2498, 2732
HpaI	GTTAAC	1 cut(s)	2308
Hpy166II	GTNNAC	9 cut(s)	547, 790, 1076, 1233, 1504, 1616, 1764, 2059, 2308
Hpy188III	TCNNGA	8 cut(s)	215, 395, 851, 1298, 2327, 2571, 2658, 2771
Hpy8I	GTNNAC	9 cut(s)	547, 790, 1076, 1233, 1504, 1616, 1764, 2059, 2308
HpyCH4III	ACNGT	4 cut(s)	1282, 1564, 1662, 2312
Hsp92I	GRCGYC	4 cut(s)	5, 134, 354, 404
HspAI	GCGC	3 cut(s)	134, 354, 404
KasI	GGCGCC	3 cut(s)	133, 353, 403
Kpn2I	TCCGGA	1 cut(s)	2770
Ksp22I	TGATCA	2 cut(s)	1261, 2020
KspAI	GTTAAC	1 cut(s)	2308
LmnI	GCTCC	4 cut(s)	274, 385, 1252, 2444
MabI	ACCWGGT	1 cut(s)	2710
MaeI	CTAG	6 cut(s)	395, 801, 1800, 1971, 2160, 2555
MaeIII	GTNAC	8 cut(s)	595, 757, 1090, 1179, 1240, 1446, 1564, 2030
MboII	GAAGA	9 cut(s)	452, 869, 1181, 1318, 1340, 1495, 1949, 2591, 2691
MfeI	CAATTG	1 cut(s)	2259
MflI	RGATCY	8 cut(s)	622, 728, 1021, 1161, 1308, 2360, 2452, 2587
MhlI	GDGCHC	8 cut(s)	111, 382, 745, 1289, 1397, 1506, 2169, 2721
MlsI	TGGCCA	2 cut(s)	65, 2800
MluNI	TGGCCA	2 cut(s)	65, 2800
Mly113I	GGCGCC	3 cut(s)	134, 354, 404
MlyI	GAGTC	4 cut(s)	1367, 1419, 1975, 2741
MmeI	TCCRAC	2 cut(s)	339, 2219
Mox20I	TGGCCA	2 cut(s)	65, 2800
Mph1103I	ATGCAT	1 cut(s)	1423
MroI	TCCGGA	1 cut(s)	2770
MroXI	GAANNNNTTC	1 cut(s)	924
MscI	TGGCCA	2 cut(s)	65, 2800
MslI	CAYNNNNRTG	4 cut(s)	764, 1366, 1538, 2028
Msp20I	TGGCCA	2 cut(s)	65, 2800
MspA1I	CMGCKG	4 cut(s)	226, 238, 589, 631
MunI	CAATTG	1 cut(s)	2259
Mva1269I	GAATGC	3 cut(s)	498, 1421, 1492
MvaI	CCWGG	5 cut(s)	266, 273, 2444, 2585, 2712
NarI	GGCGCC	3 cut(s)	134, 354, 404
NciI	CCSGG	9 cut(s)	12, 321, 429, 485, 570, 571, 1126, 2473, 2474
NmeAIII	GCCGAG	3 cut(s)	522, 805, 2500
NmuCI	GTSAC	6 cut(s)	757, 1090, 1179, 1240, 1446, 2030
NsiI	ATGCAT	1 cut(s)	1423
NspI	RCATGY	1 cut(s)	2545
PaeR7I	CTCGAG	1 cut(s)	1407
PaqCI	CACCTGC	1 cut(s)	2738
PctI	GAATGC	3 cut(s)	498, 1421, 1492
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	5 cut(s)	360, 472, 1727, 1889, 2498
PleI	GAGTC	4 cut(s)	1366, 1418, 1974, 2740
PluTI	GGCGCC	3 cut(s)	137, 357, 407
PpsI	GAGTC	4 cut(s)	1366, 1418, 1974, 2740
PsiI	TTATAA	1 cut(s)	1277
Psp124BI	GAGCTC	2 cut(s)	745, 1397
Psp6I	CCWGG	5 cut(s)	264, 271, 2442, 2583, 2710
PspEI	GGTNACC	1 cut(s)	2030
PspFI	CCCAGC	1 cut(s)	2559
PspGI	CCWGG	5 cut(s)	264, 271, 2442, 2583, 2710
PspOMI	GGGCCC	2 cut(s)	107, 1285
PspXI	VCTCGAGB	1 cut(s)	1407
PstNI	CAGNNNCTG	1 cut(s)	2621
PsuI	RGATCY	8 cut(s)	622, 728, 1021, 1161, 1308, 2360, 2452, 2587
PvuII	CAGCTG	3 cut(s)	226, 589, 631
RsaI	GTAC	4 cut(s)	161, 1197, 1372, 2051
RsaNI	GTAC	4 cut(s)	160, 1196, 1371, 2050
RseI	CAYNNNNRTG	4 cut(s)	764, 1366, 1538, 2028
SacI	GAGCTC	2 cut(s)	745, 1397
ScaI	AGTACT	2 cut(s)	1197, 2051
SchI	GAGTC	4 cut(s)	1367, 1419, 1975, 2741
SduI	GDGCHC	8 cut(s)	111, 382, 745, 1289, 1397, 1506, 2169, 2721
SexAI	ACCWGGT	1 cut(s)	2710
SfoI	GGCGCC	3 cut(s)	135, 355, 405
Sfr274I	CTCGAG	1 cut(s)	1407
SinI	GGWCC	4 cut(s)	848, 1060, 1314, 2693
SlaI	CTCGAG	1 cut(s)	1407
SmaI	CCCGGG	2 cut(s)	571, 2474
SmiMI	CAYNNNNRTG	4 cut(s)	764, 1366, 1538, 2028
SmlI	CTYRAG	3 cut(s)	213, 1407, 1819
SmoI	CTYRAG	3 cut(s)	213, 1407, 1819
SpeI	ACTAGT	1 cut(s)	1799
SspDI	GGCGCC	3 cut(s)	133, 353, 403
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	6 cut(s)	395, 801, 1800, 1971, 2160, 2555
SstI	GAGCTC	2 cut(s)	745, 1397
StyI	CCWWGG	1 cut(s)	1970
TaaI	ACNGT	4 cut(s)	1282, 1564, 1662, 2312
TatI	WGTACW	2 cut(s)	1195, 2049
TfiI	GAWTC	5 cut(s)	360, 472, 1727, 1889, 2498
TscAI	CASTG	8 cut(s)	724, 1287, 1354, 1738, 1843, 2023, 2278, 2317
TseFI	GTSAC	6 cut(s)	757, 1090, 1179, 1240, 1446, 2030
Tsp45I	GTSAC	6 cut(s)	757, 1090, 1179, 1240, 1446, 2030
TspDTI	ATGAA	7 cut(s)	870, 917, 2084, 2226, 2391, 2529, 2757
TspMI	CCCGGG	2 cut(s)	569, 2472
TspRI	CASTG	8 cut(s)	724, 1287, 1354, 1738, 1843, 2023, 2278, 2317
VneI	GTGCAC	1 cut(s)	1502
VpaK11BI	GGWCC	4 cut(s)	848, 1060, 1314, 2693
XapI	RAATTY	5 cut(s)	201, 837, 1556, 1705, 2378
XbaI	TCTAGA	1 cut(s)	394
XceI	RCATGY	1 cut(s)	2545
XcmI	CCANNNNNNNNNTGG	5 cut(s)	262, 397, 463, 1882, 2567
XhoI	CTCGAG	1 cut(s)	1407
XmaI	CCCGGG	2 cut(s)	569, 2472
XmaJI	CCTAGG	1 cut(s)	1970
XmiI	GTMKAC	1 cut(s)	1232
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	6 cut(s)	395, 801, 1800, 1971, 2160, 2555
ZrmI	AGTACT	2 cut(s)	1197, 2051
Zsp2I	ATGCAT	1 cut(s)	1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.