Rw4G000930

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000324
Physical Location & Seq
Reverse (-)
1850812 .. 1856958
6147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000930.1

Sequence Viewer

Length: 2430 bp
ATGCGGAGCAATAAGCTACTGAAAGGCAGGCATTTGATTGGGGATAGCGTGGTCTACGATGTGGGTGTTTGGTTGCCTGGGGAGTTTCAGCCGCAGCTAGAAGTTACCCCCATAGCTAAGTATGTTTCGGATCCTCAGCTGGTGTTGGGCCGCCATATTGCGGGGAATATTCAGGTTTTGAATATACACACTGCATTGAGATCGTTGTTTCGAGCTCATACACAGGGGGTCACAAACATGGCTTTCTTTGCCGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGATGGCTTTTTGTGTGGAAAATTTGTGAAGGTCCAGATGAAGAAGGCACGCCACAAATAGGAAAGATTGTTATTGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCGTCCACGAGTTTGTTGGCACTGTCATAAACAAGACGTTTTGGCTGTTGGGGTTGGGAAGCGTGTTCTACGAATTGATACTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATACTATTAAGTGTCCTGTTGAAAACCTTATTGATGGGGTCCAATTTGTTGGTAAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCTGGCTGGTTTCTGCTTCTATGGATGGAACTGGCCCACTTAATCGGGAAGTGAAGATCTGGTCCTCAGCGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAGTCATGGAAGTTTACCCAGACCTTAGAGTTAAAGAGCTCTGCTCAATCTCGAGTTGAGGATGCATTCTTTAATCAAGTCATAGCATTGTTACAAGCTGGCCTTCTTTTACTTGCAAATTCTAAGAAGAATGCTATATATGCCACGCACTTAGACTTTGGTGGTGAGCCAGCATTTACAATGCCTATTTTGAGCTTTACTGGGACAAATATATCACCTCATGCCATTCAACAGTATGCTTTGGACTTATCCAAGGGGTTACCTTCCGCATTGGAGAATTCAGGTTTAGAAAATTCAGATTCCGGTGTTTCACATGATGCAACTGAGGCGGTTTTTGAGGGTGCAGTTGCCTTGAGGTATCCTGTGCGCACTGATTCGGTTGGTGCTGCCAATTCAAAAGATATTACCACTTCGTCTATGGAATCAAAACCTAGGAAGACCACTAGCCCAGGTGATGGTGATGGTGCCAGCATGTCAGAACCATTAGCCCTGCCTCATTCTGGAGAGGAAGACCAGGATCACTCTACAAAAGATGTATCTGGGACTCTGGGTCAGCTACCGCAGAACCACGTCACAGCTAGAAACACCAAATGCATAGTCGAGAAAACAGAAATGGAAAAATATGCAAGCATCAGCAGGTGGCACTGTGGCAGTTCAAGTCCCCACTCAGGAGAAGCTGCATTTCCTCAAATTATAGCCAGGCAGGATATGATGAATCAGCTAATGACTATGCAAAAAGATTTGCAAAAGCAGATGACAATTATGGTTACCGTCCCTATTACAAAGGAAGGCAAACGAATAGAGGCGGCTCTCGGTTGGAGTATGGAGAAGGCTGTAAAGGCCAATAACGTTGCTCTGTGGGCTCAGTTTCAAGAAGAGAATGCAAAGAATGAGAAATTATTGCGAGACCGTGCTAAACAAGTAACTGGTTTGATCAATAACTTTGTGAACAAGGACTTTCCGGTTATGTTAGAGAAAATCGTGAAAAAAAAATTATTGCTGTTGTTCAGAGAAGTGGGAGAGAAAGCAGTTAATCAATTGGAAAAATCAGTTAATTCAAAACTTGAAGATACTGTATCCAGGCAAATTGAGGCGCAGTTTCAAACATTGGGTAAACAAGCTCTTCAGTTAATTCAAAACTTGAAGATACTGTATCCAGGCAAATCAAGGCGCAGTTTCAAACATCGGGATGCTCTCAAGTCTAGCACAGAAGCTTCAATAGTACCTGCCTTTGAGAAGTCATGTATAGCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTTGAACATGCAACTGTGGCTCAGCAGCATTATGAGTCTGCACTTTCGCCATTGGCCCATGCTTTTAAGGGTGAAGCTATTAGCTCTGCATCATCAGTGACTCAAACCCTAAGCGGAGAACTGGCTGATGGTCAACGTAAGTTAGTAGCTCTTGCTGCTGCACGGGGAAACTCAAGTGCAGTAAATCCTGATTGTTGTTTCACCCTGTATAATGCATTCAAGTTGTTGCTGTTGAAATCGATTGAACACCACCTAGAGTCCTTCACTGGTAGATTTTACCTATCTAAAAGTTGGAAGGTTACCAGCAAACATGCACTGTTTGCCTTGAGGAAGAAAGAATTGGTTTCCATTGTTTCTAAGGATGGAATTGATGCTGTGAGTAGTTACTCCTTGGAGTTTGGCAGTTTGCCTCTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

809

Amino Acids

88.77

Weight (kDa)

6.66

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1347
Acc16I TGCGCA 1 cut(s) 1088
Acc36I ACCTGC 2 cut(s) 1347, 1954
AccB1I GGYRCC 1 cut(s) 1184
AccB7I CCANNNNNTGG 1 cut(s) 1175
AccI GTMKAC 1 cut(s) 54
AciI CCGC 9 cut(s) 4, 92, 151, 161, 987, 1049, 1280, 1526, 2124
AclI AACGTT 1 cut(s) 1569
AclWI GGATC 3 cut(s) 125, 138, 1245
AcsI RAATTY 4 cut(s) 309, 838, 997, 1012
AcuI CTGAAG 1 cut(s) 1829
AfaI GTAC 1 cut(s) 1944
AfiI CCNNNNNNNGG 5 cut(s) 160, 347, 1175, 1220, 1388
AhdI GACNNNNNGTC 1 cut(s) 1269
AjiI CACGTC 1 cut(s) 1291
AjnI CCWGG 7 cut(s) 76, 617, 1168, 1233, 1418, 1799, 1876
AjuI GAANNNNNNNTTGG 2 cut(s) 2333, 2365
Alw21I GWGCWC 2 cut(s) 217, 761
Alw26I GTCTC 1 cut(s) 1620
AlwI GGATC 3 cut(s) 125, 138, 1245
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 5 cut(s) 148, 649, 820, 1560, 2064
ApeKI GCWGC 7 cut(s) 94, 703, 1106, 1397, 2035, 2165, 2168
ApoI RAATTY 4 cut(s) 309, 838, 997, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 1302, 1334
Asp700I GAANNNNTTC 1 cut(s) 393
AspA2I CCTAGG 1 cut(s) 1151
AspLEI GCGC 3 cut(s) 1089, 1816, 1893
AspS9I GGNCC 6 cut(s) 148, 320, 553, 650, 678, 2065
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 3 cut(s) 320, 553, 678
AvrII CCTAGG 1 cut(s) 1151
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 1184
BanII GRGCYC 3 cut(s) 217, 761, 1585
BauI CACGAG 1 cut(s) 402
BbsI GAAGAC 2 cut(s) 1163, 1236
Bbv12I GWGCWC 2 cut(s) 217, 761
BbvCI CCTCAGC 3 cut(s) 135, 510, 682
BbvI GCAGC 7 cut(s) 106, 690, 1093, 1384, 2047, 2152, 2155
BccI CCATC 8 cut(s) 285, 542, 569, 635, 1169, 1175, 2132, 2366
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
BciVI GTATCC 4 cut(s) 508, 1089, 1807, 1884
BclI TGATCA 1 cut(s) 1653
BcoDI GTCTC 1 cut(s) 1620
BfaI CTAG 7 cut(s) 98, 273, 1152, 1164, 1299, 1923, 2264
BfuAI ACCTGC 2 cut(s) 1347, 1954
BfuI GTATCC 4 cut(s) 508, 1089, 1807, 1884
BglII AGATCT 1 cut(s) 672
BlnI CCTAGG 1 cut(s) 1151
BlpI GCTNAGC 1 cut(s) 2031
Bme1390I CCNGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
Bme18I GGWCC 3 cut(s) 320, 553, 678
BmeRI GACNNNNNGTC 1 cut(s) 1269
BmeT110I CYCGRG 1 cut(s) 771
BmgBI CACGTC 1 cut(s) 1291
BmgT120I GGNCC 6 cut(s) 148, 320, 553, 650, 678, 2065
BmiI GGNNCC 3 cut(s) 132, 554, 1186
BmrFI CCNGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
BmrI ACTGGG 2 cut(s) 705, 930
BmsI GCATC 8 cut(s) 706, 772, 1027, 1359, 1900, 1978, 2108, 2371
BmuI ACTGGG 2 cut(s) 705, 930
BpiI GAAGAC 2 cut(s) 1163, 1236
BplI GAGNNNNNCTC 2 cut(s) 748, 780
BpmI CTGGAG 1 cut(s) 1242
Bpu10I CCTNAGC 4 cut(s) 135, 510, 682, 2120
Bpu1102I GCTNAGC 1 cut(s) 2031
BpuEI CTTGAG 4 cut(s) 1093, 1901, 2167, 2356
Bsa29I ATCGAT 1 cut(s) 2249
BsaI GGTCTC 1 cut(s) 1620
BsaJI CCNNGG 6 cut(s) 77, 252, 972, 1151, 1168, 2400
BsaWI WCCGGW 2 cut(s) 1022, 1681
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 347, 1175, 1220, 1388
Bse1I ACTGG 6 cut(s) 652, 711, 925, 1651, 2136, 2281
BseBI CCWGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
BseCI ATCGAT 1 cut(s) 2249
BseDI CCNNGG 6 cut(s) 77, 252, 972, 1151, 1168, 2400
BseGI GGATG 7 cut(s) 262, 296, 615, 646, 787, 1915, 2377
BseLI CCNNNNNNNGG 5 cut(s) 160, 347, 1175, 1220, 1388
BseMII CTCAG 8 cut(s) 149, 501, 696, 711, 1035, 1401, 1598, 2045
BseNI ACTGG 6 cut(s) 652, 711, 925, 1651, 2136, 2281
BseXI GCAGC 7 cut(s) 106, 690, 1093, 1384, 2047, 2152, 2155
BsgI GTGCAG 4 cut(s) 1083, 2034, 2154, 2208
BshFI GGCC 5 cut(s) 150, 651, 822, 1562, 2066
BshNI GGYRCC 1 cut(s) 1184
BshVI ATCGAT 1 cut(s) 2249
BsiHKAI GWGCWC 2 cut(s) 217, 761
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 2 cut(s) 1023, 1682
BslFI GGGAC 5 cut(s) 485, 937, 1276, 1365, 1478
BslI CCNNNNNNNGG 5 cut(s) 160, 347, 1175, 1220, 1388
BsmAI GTCTC 1 cut(s) 1620
BsmFI GGGAC 5 cut(s) 485, 937, 1276, 1365, 1478
BsmI GAATGC 4 cut(s) 785, 856, 1606, 2225
BsnI GGCC 5 cut(s) 150, 651, 822, 1562, 2066
Bso31I GGTCTC 1 cut(s) 1620
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 3 cut(s) 217, 761, 1585
Bsp143I GATC 5 cut(s) 130, 200, 672, 1237, 1653
Bsp1720I GCTNAGC 1 cut(s) 2031
BspACI CCGC 9 cut(s) 4, 92, 151, 161, 987, 1049, 1280, 1526, 2124
BspANI GGCC 5 cut(s) 150, 651, 822, 1562, 2066
BspCNI CTCAG 8 cut(s) 148, 502, 695, 712, 1036, 1400, 1597, 2044
BspDI ATCGAT 1 cut(s) 2249
BspLI GGNNCC 3 cut(s) 132, 554, 1186
BspMI ACCTGC 2 cut(s) 1347, 1954
BspPI GGATC 3 cut(s) 125, 138, 1245
BspQI GCTCTTC 1 cut(s) 1848
BspT107I GGYRCC 1 cut(s) 1184
BspTNI GGTCTC 1 cut(s) 1620
BsrI ACTGG 6 cut(s) 652, 711, 925, 1651, 2136, 2281
BssECI CCNNGG 6 cut(s) 77, 252, 972, 1151, 1168, 2400
BssMI GATC 5 cut(s) 130, 200, 672, 1237, 1653
BssSI CACGAG 1 cut(s) 402
BssT1I CCWWGG 3 cut(s) 972, 1151, 2400
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
Bst4CI ACNGT 9 cut(s) 419, 954, 1367, 1492, 1631, 1795, 1872, 2026, 2328
Bst6I CTCTTC 2 cut(s) 1590, 1848
BstAPI GCANNNNNTGC 1 cut(s) 2330
BstC8I GCNNGC 7 cut(s) 29, 338, 701, 820, 891, 1189, 1348
BstEII GGTNACC 3 cut(s) 978, 1486, 2308
BstF5I GGATG 7 cut(s) 262, 296, 615, 646, 787, 1915, 2377
BstHHI GCGC 3 cut(s) 1089, 1816, 1893
BstKTI GATC 5 cut(s) 133, 203, 675, 1240, 1656
BstMAI GTCTC 1 cut(s) 1620
BstMBI GATC 5 cut(s) 130, 200, 672, 1237, 1653
BstMWI GCNNNNNNNGC 8 cut(s) 248, 860, 1046, 1559, 1580, 2027, 2165, 2330
BstNI CCWGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
BstNSI RCATGY 3 cut(s) 1195, 2021, 2324
BstPI GGTNACC 3 cut(s) 978, 1486, 2308
BstSCI CCNGG 7 cut(s) 76, 617, 1168, 1233, 1418, 1799, 1876
BstV1I GCAGC 7 cut(s) 106, 690, 1093, 1384, 2047, 2152, 2155
BstV2I GAAGAC 2 cut(s) 1163, 1236
BstX2I RGATCY 2 cut(s) 130, 672
BstXI CCANNNNNNTGG 2 cut(s) 563, 622
BstYI RGATCY 2 cut(s) 130, 672
Bsu15I ATCGAT 1 cut(s) 2249
BsuI GTATCC 4 cut(s) 508, 1089, 1807, 1884
BsuRI GGCC 5 cut(s) 150, 651, 822, 1562, 2066
BsuTUI ATCGAT 1 cut(s) 2249
BtrI CACGTC 1 cut(s) 1291
BtsCI GGATG 7 cut(s) 262, 296, 615, 646, 787, 1915, 2377
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 8 cut(s) 189, 415, 718, 1089, 1363, 2112, 2274, 2324
BveI ACCTGC 2 cut(s) 1347, 1954
Cac8I GCNNGC 7 cut(s) 29, 338, 701, 820, 891, 1189, 1348
CfoI GCGC 3 cut(s) 1089, 1816, 1893
Cfr13I GGNCC 6 cut(s) 148, 320, 553, 650, 678, 2065
ClaI ATCGAT 1 cut(s) 2249
Csp6I GTAC 1 cut(s) 1943
CviQI GTAC 1 cut(s) 1943
DpnI GATC 5 cut(s) 132, 202, 674, 1239, 1655
DpnII GATC 5 cut(s) 130, 200, 672, 1237, 1653
DriI GACNNNNNGTC 1 cut(s) 1269
Eam1104I CTCTTC 2 cut(s) 1590, 1848
Eam1105I GACNNNNNGTC 1 cut(s) 1269
EarI CTCTTC 2 cut(s) 1590, 1848
Ecl136II GAGCTC 2 cut(s) 215, 759
Eco130I CCWWGG 3 cut(s) 972, 1151, 2400
Eco24I GRGCYC 3 cut(s) 217, 761, 1585
Eco31I GGTCTC 1 cut(s) 1620
Eco47I GGWCC 3 cut(s) 320, 553, 678
Eco53kI GAGCTC 2 cut(s) 215, 759
Eco57I CTGAAG 1 cut(s) 1829
Eco88I CYCGRG 1 cut(s) 771
Eco91I GGTNACC 3 cut(s) 978, 1486, 2308
EcoICRI GAGCTC 2 cut(s) 215, 759
EcoO65I GGTNACC 3 cut(s) 978, 1486, 2308
EcoRI GAATTC 1 cut(s) 997
EcoRII CCWGG 7 cut(s) 76, 617, 1168, 1233, 1418, 1799, 1876
EcoT14I CCWWGG 3 cut(s) 972, 1151, 2400
EcoT22I ATGCAT 3 cut(s) 787, 1316, 2227
EcoT38I GRGCYC 3 cut(s) 217, 761, 1585
ErhI CCWWGG 3 cut(s) 972, 1151, 2400
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 807, 839
FaqI GGGAC 5 cut(s) 485, 937, 1276, 1365, 1478
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 1 cut(s) 1653
FblI GTMKAC 1 cut(s) 54
FokI GGATG 7 cut(s) 269, 303, 622, 653, 794, 1922, 2384
FriOI GRGCYC 3 cut(s) 217, 761, 1585
FspAI RTGCGCAY 1 cut(s) 1088
FspBI CTAG 7 cut(s) 98, 273, 1152, 1164, 1299, 1923, 2264
FspI TGCGCA 1 cut(s) 1088
GlaI GCGC 3 cut(s) 1088, 1815, 1892
GsuI CTGGAG 1 cut(s) 1242
HaeIII GGCC 5 cut(s) 150, 651, 822, 1562, 2066
HapII CCGG 2 cut(s) 1023, 1682
HhaI GCGC 3 cut(s) 1089, 1816, 1893
Hin6I GCGC 3 cut(s) 1087, 1814, 1891
HinP1I GCGC 3 cut(s) 1087, 1814, 1891
HincII GTYRAC 1 cut(s) 2144
HindII GTYRAC 1 cut(s) 2144
HindIII AAGCTT 1 cut(s) 1932
HinfI GANTC 9 cut(s) 722, 1019, 1094, 1142, 1264, 1435, 2045, 2110, 2267
HpaII CCGG 2 cut(s) 1023, 1682
Hpy166II GTNNAC 8 cut(s) 55, 262, 401, 569, 735, 1669, 1835, 2144
Hpy188I TCNGA 4 cut(s) 130, 1018, 1198, 1730
Hpy8I GTNNAC 8 cut(s) 55, 262, 401, 569, 735, 1669, 1835, 2144
HpyCH4III ACNGT 9 cut(s) 419, 954, 1367, 1492, 1631, 1795, 1872, 2026, 2328
HpyCH4IV ACGT 4 cut(s) 432, 1290, 1569, 2146
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 860, 1046, 1559, 1580, 2027, 2165, 2330
HpySE526I ACGT 4 cut(s) 432, 1290, 1569, 2146
HspAI GCGC 3 cut(s) 1087, 1814, 1891
Ksp22I TGATCA 1 cut(s) 1653
Kzo9I GATC 5 cut(s) 130, 200, 672, 1237, 1653
LguI GCTCTTC 1 cut(s) 1848
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 7 cut(s) 106, 690, 1093, 1384, 2047, 2152, 2155
LweI GCATC 8 cut(s) 706, 772, 1027, 1359, 1900, 1978, 2108, 2371
MaeI CTAG 7 cut(s) 98, 273, 1152, 1164, 1299, 1923, 2264
MaeII ACGT 4 cut(s) 432, 1290, 1569, 2146
MalI GATC 5 cut(s) 132, 202, 674, 1239, 1655
MboI GATC 5 cut(s) 130, 200, 672, 1237, 1653
MfeI CAATTG 1 cut(s) 1757
MflI RGATCY 2 cut(s) 130, 672
MhlI GDGCHC 3 cut(s) 217, 761, 1585
MlyI GAGTC 5 cut(s) 731, 1258, 2054, 2104, 2276
MmeI TCCRAC 2 cut(s) 1517, 2282
Mph1103I ATGCAT 3 cut(s) 787, 1316, 2227
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 8 cut(s) 522, 657, 752, 792, 1752, 1773, 1850, 2076
MslI CAYNNNNRTG 2 cut(s) 236, 1908
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 2 cut(s) 1023, 1682
MspR9I CCNGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
MunI CAATTG 1 cut(s) 1757
Mva1269I GAATGC 4 cut(s) 785, 856, 1606, 2225
MvaI CCWGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
MwoI GCNNNNNNNGC 8 cut(s) 248, 860, 1046, 1559, 1580, 2027, 2165, 2330
NdeII GATC 5 cut(s) 130, 200, 672, 1237, 1653
NlaIV GGNNCC 3 cut(s) 132, 554, 1186
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 4 cut(s) 229, 583, 1291, 2107
NsbI TGCGCA 1 cut(s) 1088
NsiI ATGCAT 3 cut(s) 787, 1316, 2227
NspI RCATGY 3 cut(s) 1195, 2021, 2324
PaeR7I CTCGAG 1 cut(s) 771
PaqCI CACCTGC 1 cut(s) 1347
PciSI GCTCTTC 1 cut(s) 1848
PctI GAATGC 4 cut(s) 785, 856, 1606, 2225
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 4 cut(s) 1019, 1094, 1142, 1435
PflMI CCANNNNNTGG 1 cut(s) 1175
PleI GAGTC 5 cut(s) 730, 1258, 2053, 2104, 2275
PpsI GAGTC 5 cut(s) 730, 1258, 2053, 2104, 2275
Psp124BI GAGCTC 2 cut(s) 217, 761
Psp1406I AACGTT 1 cut(s) 1569
Psp6I CCWGG 7 cut(s) 76, 617, 1168, 1233, 1418, 1799, 1876
PspEI GGTNACC 3 cut(s) 978, 1486, 2308
PspGI CCWGG 7 cut(s) 76, 617, 1168, 1233, 1418, 1799, 1876
PspN4I GGNNCC 3 cut(s) 132, 554, 1186
PspPI GGNCC 6 cut(s) 148, 320, 553, 650, 678, 2065
PsuI RGATCY 2 cut(s) 130, 672
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 1944
RsaNI GTAC 1 cut(s) 1943
RseI CAYNNNNRTG 2 cut(s) 236, 1908
SacI GAGCTC 2 cut(s) 217, 761
SapI GCTCTTC 1 cut(s) 1848
SaqAI TTAA 8 cut(s) 522, 657, 752, 792, 1752, 1773, 1850, 2076
Sau3AI GATC 5 cut(s) 130, 200, 672, 1237, 1653
Sau96I GGNCC 6 cut(s) 148, 320, 553, 650, 678, 2065
SchI GAGTC 5 cut(s) 731, 1258, 2054, 2104, 2276
ScrFI CCNGG 7 cut(s) 78, 619, 1170, 1235, 1420, 1801, 1878
SduI GDGCHC 3 cut(s) 217, 761, 1585
SfaNI GCATC 8 cut(s) 706, 772, 1027, 1359, 1900, 1978, 2108, 2371
Sfr274I CTCGAG 1 cut(s) 771
SinI GGWCC 3 cut(s) 320, 553, 678
SlaI CTCGAG 1 cut(s) 771
SmiMI CAYNNNNRTG 2 cut(s) 236, 1908
SmlI CTYRAG 5 cut(s) 771, 1072, 1916, 2182, 2335
SmoI CTYRAG 5 cut(s) 771, 1072, 1916, 2182, 2335
SsiI CCGC 9 cut(s) 4, 92, 151, 161, 987, 1049, 1280, 1526, 2124
SspI AATATT 1 cut(s) 169
SspMI CTAG 7 cut(s) 98, 273, 1152, 1164, 1299, 1923, 2264
SstI GAGCTC 2 cut(s) 217, 761
StyD4I CCNGG 7 cut(s) 76, 617, 1168, 1233, 1418, 1799, 1876
StyI CCWWGG 3 cut(s) 972, 1151, 2400
TaaI ACNGT 9 cut(s) 419, 954, 1367, 1492, 1631, 1795, 1872, 2026, 2328
TaiI ACGT 4 cut(s) 435, 1293, 1572, 2149
TaqI TCGA 4 cut(s) 211, 772, 1320, 2249
TauI GCSGC 3 cut(s) 94, 153, 1529
TfiI GAWTC 4 cut(s) 1019, 1094, 1142, 1435
Tru1I TTAA 8 cut(s) 522, 657, 752, 792, 1752, 1773, 1850, 2076
Tru9I TTAA 8 cut(s) 522, 657, 752, 792, 1752, 1773, 1850, 2076
TscAI CASTG 8 cut(s) 196, 422, 718, 1096, 1370, 2112, 2281, 2331
TseFI GTSAC 4 cut(s) 229, 583, 1291, 2107
TseI GCWGC 7 cut(s) 94, 703, 1106, 1397, 2035, 2165, 2168
Tsp45I GTSAC 4 cut(s) 229, 583, 1291, 2107
TspDTI ATGAA 2 cut(s) 342, 1448
TspRI CASTG 8 cut(s) 196, 422, 718, 1096, 1370, 2112, 2281, 2331
Van91I CCANNNNNTGG 1 cut(s) 1175
VpaK11BI GGWCC 3 cut(s) 320, 553, 678
XapI RAATTY 4 cut(s) 309, 838, 997, 1012
XceI RCATGY 3 cut(s) 1195, 2021, 2324
XcmI CCANNNNNNNNNTGG 2 cut(s) 408, 1135
XhoI CTCGAG 1 cut(s) 771
XmaJI CCTAGG 1 cut(s) 1151
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 7 cut(s) 98, 273, 1152, 1164, 1299, 1923, 2264
Zsp2I ATGCAT 3 cut(s) 787, 1316, 2227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.