Rmu_sc0002498.1_g000020

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002498.1
Physical Location & Seq
Reverse (-)
130091 .. 132614
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002498.1_g000020.1.cds

Sequence Viewer

Length: 669 bp
atgcggcaggtgtgtactgaccttcttgaggaaatggaattggttttcattgtttctaaggatggaattgatactgtgagagtgctagaagttacccccataaccaagtatgattcggaccctcagctggtgttgggccgccaaattgcggtgaataagtcatatgtatgcatgctatggattgaagcaggggaatattcgggttttgaatattcgggtgtgagtgtagaaggatggctttttgtctggaaaatttctgaaggtccagacgaagacggtacgccacaaatcacaggaaagattgttatagccattcaacaggttttggttgttcgggttaggaagcgtgttctacagattgatactactaaagttgcaaggggtaaagtcccttctgctgaggatcctattaagtttcctgttgaaaagcttattgatggggtccaatttgttggtaaacatgacggagagataacagattttatcaatgtgccaatggatgaccacctggctggtttctgcttctatggatggaactccattgagtggggggttgatgaagagtttgcagacagtgatgtgaggctggggcttccctctatggaggctgctgcagaacacttccaaataccatcaccgcaatatctaaggctctttctaacgagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

222

Amino Acids

24.96

Weight (kDa)

4.55

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 546
AciI CCGC 4 cut(s) 4, 139, 149, 638
AclWI GGATC 2 cut(s) 398, 411
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 16, 280
AfiI CCNNNNNNNGG 4 cut(s) 28, 127, 148, 546
AgsI TTSAA 4 cut(s) 185, 209, 317, 425
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 3 cut(s) 127, 430, 666
AluI AGCT 3 cut(s) 127, 430, 666
AlwI GGATC 2 cut(s) 398, 411
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 608, 611
ApoI RAATTY 1 cut(s) 252
AspS9I GGNCC 4 cut(s) 118, 136, 263, 442
AsuHPI GGTGA 2 cut(s) 163, 627
AvaII GGWCC 3 cut(s) 118, 263, 442
BamHI GGATCC 1 cut(s) 403
BarI GAAGNNNNNNTAC 2 cut(s) 376, 408
BbsI GAAGAC 1 cut(s) 279
BbvCI CCTCAGC 2 cut(s) 123, 399
BbvI GCAGC 2 cut(s) 595, 598
BccI CCATC 5 cut(s) 56, 228, 431, 525, 640
BciT130I CCWGG 1 cut(s) 509
BfaI CTAG 2 cut(s) 86, 667
BfmI CTRYAG 2 cut(s) 353, 612
BisI GCNGC 4 cut(s) 5, 139, 609, 612
BlsI GCNGC 4 cut(s) 6, 140, 610, 613
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 3 cut(s) 118, 263, 442
BmgT120I GGNCC 4 cut(s) 118, 136, 263, 442
BmiI GGNNCC 3 cut(s) 120, 405, 443
BmrFI CCNGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 279
Bpu10I CCTNAGC 2 cut(s) 123, 399
BpuEI CTTGAG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 127, 148, 546
BseBI CCWGG 1 cut(s) 509
BseGI GGATG 4 cut(s) 67, 239, 505, 536
BseLI CCNNNNNNNGG 4 cut(s) 28, 127, 148, 546
BseMII CTCAG 2 cut(s) 137, 390
BseXI GCAGC 2 cut(s) 595, 598
BseYI CCCAGC 1 cut(s) 586
BshFI GGCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 4 cut(s) 28, 127, 148, 546
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 4 cut(s) 4, 139, 149, 638
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 136, 391
BspLI GGNNCC 3 cut(s) 120, 405, 443
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 2 cut(s) 398, 411
BssMI GATC 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 76, 278, 575
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 57, 123, 399, 647
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 4 cut(s) 67, 239, 505, 536
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 2 cut(s) 353, 612
BstV1I GCAGC 2 cut(s) 595, 598
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 2 cut(s) 452, 512
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 4 cut(s) 67, 239, 505, 536
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 173
Cfr13I GGNCC 4 cut(s) 118, 136, 263, 442
Csp6I GTAC 2 cut(s) 15, 279
CviAII CATG 2 cut(s) 172, 461
CviQI GTAC 2 cut(s) 15, 279
DdeI CTNAG 4 cut(s) 57, 123, 399, 647
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco47I GGWCC 3 cut(s) 118, 263, 442
Eco57I CTGAAG 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 173
FaeI CATG 2 cut(s) 175, 464
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 374
FatI CATG 2 cut(s) 171, 460
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 5, 139, 609, 612
FokI GGATG 4 cut(s) 74, 246, 512, 543
Fsp4HI GCNGC 4 cut(s) 5, 139, 609, 612
FspBI CTAG 2 cut(s) 86, 667
GluI GCNGC 4 cut(s) 5, 139, 609, 612
GsaI CCCAGC 1 cut(s) 590
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 2 cut(s) 175, 464
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 1 cut(s) 113
HphI GGTGA 2 cut(s) 163, 627
Hpy166II GTNNAC 2 cut(s) 15, 458
Hpy188I TCNGA 2 cut(s) 118, 259
Hpy188III TCNNGA 3 cut(s) 26, 247, 266
Hpy8I GTNNAC 2 cut(s) 15, 458
HpyAV CCTTC 4 cut(s) 32, 224, 254, 402
HpyCH4III ACNGT 3 cut(s) 76, 278, 575
HpyCH4V TGCA 4 cut(s) 171, 377, 569, 614
HpyF3I CTNAG 4 cut(s) 57, 123, 399, 647
Hsp92II CATG 2 cut(s) 175, 464
Kzo9I GATC 1 cut(s) 403
Lsp1109I GCAGC 2 cut(s) 595, 598
MaeI CTAG 2 cut(s) 86, 667
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 2 cut(s) 284, 572
MflI RGATCY 1 cut(s) 403
MluCI AATT 5 cut(s) 38, 66, 144, 252, 446
MnlI CCTC 6 cut(s) 22, 132, 394, 576, 598, 607
Mph1103I ATGCAT 1 cut(s) 173
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 403
NlaIII CATG 2 cut(s) 175, 464
NlaIV GGNNCC 3 cut(s) 120, 405, 443
NsiI ATGCAT 1 cut(s) 173
NspI RCATGY 1 cut(s) 175
PaeI GCATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 546
PkrI GCNGC 4 cut(s) 6, 140, 610, 613
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 120, 405, 443
PspPI GGNCC 4 cut(s) 118, 136, 263, 442
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 2 cut(s) 16, 280
RsaNI GTAC 2 cut(s) 15, 279
RseI CAYNNNNRTG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 4 cut(s) 5, 139, 609, 612
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 4 cut(s) 118, 136, 263, 442
ScrFI CCNGG 1 cut(s) 509
SetI ASST 8 cut(s) 12, 24, 129, 265, 324, 432, 510, 668
SfcI CTRYAG 2 cut(s) 353, 612
SinI GGWCC 3 cut(s) 118, 263, 442
SmiMI CAYNNNNRTG 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SphI GCATGC 1 cut(s) 175
Sse9I AATT 5 cut(s) 38, 66, 144, 252, 446
SsiI CCGC 4 cut(s) 4, 139, 149, 638
SspI AATATT 2 cut(s) 197, 212
SspMI CTAG 2 cut(s) 86, 667
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 76, 278, 575
TasI AATT 5 cut(s) 38, 66, 144, 252, 446
TatI WGTACW 1 cut(s) 14
TauI GCSGC 2 cut(s) 7, 141
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 580
TseI GCWGC 2 cut(s) 608, 611
TspDTI ATGAA 2 cut(s) 37, 573
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 1 cut(s) 546
VpaK11BI GGWCC 3 cut(s) 118, 263, 442
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 252
XceI RCATGY 1 cut(s) 175
XspI CTAG 2 cut(s) 86, 667
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.