Rh4BG172100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000324
Physical Location & Seq
Reverse (-)
30738230 .. 30743595
5366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG172100.1

Sequence Viewer

Length: 279 bp
ATGGGAGTCTGCACTTACCGGTGTGTCACTTCCTATGACCAAAGGCCTTGGTGGCTGGTGACAGTGTGTATTCGGGCTCTACATGCAAACAAGGAGAGATTGAAGCTGTGGCGATTGCCACTGGTGTTCATACCTTTTTCGGCAAGGCGGCTCACCTTGTCGATAGCACAAATCAACAGGGCCACTTTCAAAAGTTGGAAGGTTACGAGCAAAAATACAGTTGTATACCTTGACGTTGGTGAGACTCTTATGATGGGCAGAGCAAGCAATGAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.76

Weight (kDa)

10.43

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 148, 274
AgeI ACCGGT 1 cut(s) 18
AgsI TTSAA 2 cut(s) 103, 190
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 2 cut(s) 44, 180
AsiGI ACCGGT 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 70, 145, 251
BanII GRGCYC 1 cut(s) 79
BccI CCATC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 126
BshFI GGCC 2 cut(s) 46, 182
BshTI ACCGGT 1 cut(s) 18
BsiSI CCGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 2 cut(s) 46, 182
Bsp1286I GDGCHC 1 cut(s) 79
BspACI CCGC 2 cut(s) 148, 274
BspANI GGCC 2 cut(s) 46, 182
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 18
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 47
BssNAI GTATAC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 64, 220
BstC8I GCNNGC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 52, 83, 264
BstNSI RCATGY 1 cut(s) 86
BstZ17I GTATAC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 46, 182
BtsIMutI CAGTG 2 cut(s) 69, 119
Cac8I GCNNGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 180
CspAI ACCGGT 1 cut(s) 18
CviAII CATG 1 cut(s) 83
CviJI RGCY 6 cut(s) 46, 55, 77, 106, 151, 182
CviKI_1 RGCY 6 cut(s) 46, 55, 77, 106, 151, 182
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 36, 84, 131, 226, 251
FatI CATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 2 cut(s) 46, 182
HapII CCGG 1 cut(s) 19
Hin1II CATG 1 cut(s) 86
HinfI GANTC 2 cut(s) 6, 244
HpaII CCGG 1 cut(s) 19
HphI GGTGA 3 cut(s) 70, 145, 251
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 64, 220
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 12, 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 83, 264
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 1 cut(s) 86
LpnPI CCDG 4 cut(s) 32, 41, 107, 163
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 3 cut(s) 25, 58, 202
MbiI CCGCTC 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 79
MlyI GAGTC 2 cut(s) 15, 238
MmeI TCCRAC 1 cut(s) 176
MspI CCGG 1 cut(s) 19
MwoI GCNNNNNNNGC 3 cut(s) 52, 83, 264
NlaIII CATG 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 25, 58
NspI RCATGY 1 cut(s) 86
PceI AGGCCT 1 cut(s) 46
PinAI ACCGGT 1 cut(s) 18
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 2 cut(s) 14, 238
PpsI GAGTC 2 cut(s) 14, 238
PspPI GGNCC 1 cut(s) 180
SatI GCNGC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 2 cut(s) 15, 238
SduI GDGCHC 1 cut(s) 79
SetI ASST 6 cut(s) 108, 136, 158, 204, 231, 237
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 2 cut(s) 148, 274
StuI AGGCCT 1 cut(s) 46
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 64, 220
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 161
TauI GCSGC 1 cut(s) 151
TscAI CASTG 2 cut(s) 69, 126
TseFI GTSAC 2 cut(s) 25, 58
Tsp45I GTSAC 2 cut(s) 25, 58
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 2 cut(s) 69, 126
XceI RCATGY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.