Rh4BG010200

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000324
Physical Location & Seq
Reverse (-)
1472110 .. 1474983
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG010200.1

Sequence Viewer

Length: 1296 bp
ATGCCGAGCAATAAGCTACCGAAAGGCGGACATTTGATTGGGGATAGCGTGGTTTACGATGTGGGTGTTTGGTTACCCGGGGAGTTTCAGCCGCAGCTAGAAGTTACCCCCATAGCTAAGTATGTTTCAGATCCTCAGCTGGTGTTGGGCCGCCAAATTGCGGTGAATAAGTCATATATATGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAATATACACACTGCATTGAGATCGTTGTTTCGAGTTCATACACAGAGGGTCACATACATGGCTTTCTTTGCTGAGGATGTTCACCTTTTGGCTAGTGTGAGTGTAGAAGGACGGCTGTTTTTGTGGAAAATTTCTGAAGGTCCGGATGAAGAAGGTACGCCACAAATCACCGGAAAGATTGTTATTGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCGTCCACGAGTTTGTTGGCACTGTCATAAACAAGAGGTTTTGGCTGTTGGGGTTGGGAAGCGTGTTCTACGAATTGATGCTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATCCTATTAAGTGTCCTGTTGAAAAACTTATGGATGGGGTCCAATTTGTTGGTAAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCTGGCTGGTTTCTGCTTCAATGGATGGAACTGGCCCACTTAATCGGGAAGTGAAGATCTGGTCCTCAGTGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAGTCATGGAAGAGTACCCAGACCTTAGAGTTAAAGAGCTCTGCTCAATCTCGAGTTGCGGATGCATTCTTTAATCAAGTCATAGCATTGTCACAAGCTGGCCTTCTTTTACTTGCAAATGCTAAGAAGAATGCTATATATGCCATGCACTTAGACTTTGGTGGTGAGCCAGCATTTACAATGCCTATTATGAGCTTTACTGGGACAAATATATCACCTCATGGTGAACAAATCGTTCAGGTTTATTGTGTCCAAACACAAGCCATTCAACAGTATGCTTTGGACTTATCTAAGTGGTTACCTCCCCCATCGGAGAATTCAGGTTTAGAAAAGTCAGATTCCAGTGTTTCACATGATGCAACTGAGGCGGTGTCAACTAATTCAGCATCGAAACCAACCATACAAGCTACTAGTTTTGAGGGTGCAGTTACCTTGAGGTATCCTGTGCGCACTGGTTCGGTTGGTGCCTGCCAATTCAAAAGATATTACCACTTCGTCTATGGAATCAAAACCTGTTGCATCGCCACCGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

431

Amino Acids

47.17

Weight (kDa)

6.28

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ge1_WD40 PF16529 35 - 151 3.7e-08 WD40 region of Ge1, enhancer of mRNA-decapping protein
WD40_WDHD1_1st PF24817 52 - 170 3.9e-07 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1208
AccB1I GGYRCC 1 cut(s) 1223
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 6 cut(s) 27, 92, 151, 161, 818, 1127
AclWI GGATC 3 cut(s) 125, 548, 561
AcsI RAATTY 2 cut(s) 345, 1075
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 2 cut(s) 373, 775
AfiI CCNNNNNNNGG 2 cut(s) 26, 160
AgsI TTSAA 7 cut(s) 193, 217, 410, 575, 675, 1028, 1237
AhlI ACTAGT 1 cut(s) 1169
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 9 cut(s) 16, 97, 116, 139, 431, 798, 857, 954, 1166
AluI AGCT 9 cut(s) 16, 97, 116, 139, 431, 798, 857, 954, 1166
Alw21I GWGCWC 1 cut(s) 800
Alw26I GTCTC 1 cut(s) 1284
AlwI GGATC 3 cut(s) 125, 548, 561
Ama87I CYCGRG 2 cut(s) 77, 810
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 3 cut(s) 148, 688, 859
ApeKI GCWGC 2 cut(s) 94, 742
ApoI RAATTY 2 cut(s) 345, 1075
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 1209
AspS9I GGNCC 5 cut(s) 148, 356, 592, 689, 717
AsuC2I CCSGG 2 cut(s) 78, 79
AsuHPI GGTGA 9 cut(s) 175, 290, 376, 431, 545, 634, 935, 966, 995
AvaI CYCGRG 2 cut(s) 77, 810
AvaII GGWCC 3 cut(s) 356, 592, 717
BamHI GGATCC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 1 cut(s) 800
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 800
BbvCI CCTCAGC 3 cut(s) 135, 288, 549
BbvI GCAGC 2 cut(s) 106, 729
BccI CCATC 4 cut(s) 581, 608, 674, 1075
BceAI ACGGC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 658
BciVI GTATCC 1 cut(s) 1209
BcnI CCSGG 2 cut(s) 78, 79
BcoDI GTCTC 1 cut(s) 1284
BcuI ACTAGT 1 cut(s) 1169
BfaI CTAG 4 cut(s) 98, 309, 1170, 1294
BfuI GTATCC 1 cut(s) 1209
BglII AGATCT 1 cut(s) 711
BisI GCNGC 4 cut(s) 92, 95, 151, 743
BlsI GCNGC 4 cut(s) 93, 96, 152, 744
Bme1390I CCNGG 3 cut(s) 78, 79, 658
Bme18I GGWCC 3 cut(s) 356, 592, 717
BmeT110I CYCGRG 2 cut(s) 77, 810
BmgT120I GGNCC 5 cut(s) 148, 356, 592, 689, 717
BmiI GGNNCC 3 cut(s) 555, 593, 1225
BmrFI CCNGG 3 cut(s) 78, 79, 658
BmrI ACTGGG 2 cut(s) 744, 969
BmsI GCATC 6 cut(s) 502, 745, 811, 1105, 1154, 1287
BmuI ACTGGG 2 cut(s) 744, 969
BplI GAGNNNNNCTC 2 cut(s) 787, 819
Bpu10I CCTNAGC 3 cut(s) 135, 288, 549
BpuEI CTTGAG 1 cut(s) 1213
BpuMI CCSGG 2 cut(s) 78, 79
BsaJI CCNNGG 2 cut(s) 77, 78
BsaWI WCCGGW 3 cut(s) 358, 386, 1286
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 160
Bse1I ACTGG 5 cut(s) 691, 750, 964, 1101, 1216
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 658
BseDI CCNNGG 2 cut(s) 77, 78
BseGI GGATG 6 cut(s) 298, 367, 592, 654, 685, 826
BseLI CCNNNNNNNGG 2 cut(s) 26, 160
BseMII CTCAG 6 cut(s) 149, 279, 540, 735, 750, 1113
BseNI ACTGG 5 cut(s) 691, 750, 964, 1101, 1216
BseXI GCAGC 2 cut(s) 106, 729
BsgI GTGCAG 1 cut(s) 1203
BshFI GGCC 3 cut(s) 150, 690, 861
BshNI GGYRCC 1 cut(s) 1223
BsiHKAI GWGCWC 1 cut(s) 800
BsiHKCI CYCGRG 2 cut(s) 77, 810
BsiSI CCGG 4 cut(s) 78, 359, 387, 1287
BslFI GGGAC 2 cut(s) 524, 976
BslI CCNNNNNNNGG 2 cut(s) 26, 160
BsmAI GTCTC 1 cut(s) 1284
BsmFI GGGAC 2 cut(s) 524, 976
BsmI GAATGC 2 cut(s) 824, 895
BsnI GGCC 3 cut(s) 150, 690, 861
BsoBI CYCGRG 2 cut(s) 77, 810
Bsp1286I GDGCHC 1 cut(s) 800
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 4 cut(s) 130, 236, 553, 711
BspACI CCGC 6 cut(s) 27, 92, 151, 161, 818, 1127
BspANI GGCC 3 cut(s) 150, 690, 861
BspCNI CTCAG 6 cut(s) 148, 280, 541, 734, 751, 1114
BspEI TCCGGA 1 cut(s) 358
BspLI GGNNCC 3 cut(s) 555, 593, 1225
BspPI GGATC 3 cut(s) 125, 548, 561
BspT107I GGYRCC 1 cut(s) 1223
BsrI ACTGG 5 cut(s) 691, 750, 964, 1101, 1216
BssECI CCNNGG 2 cut(s) 77, 78
BssMI GATC 4 cut(s) 130, 236, 553, 711
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 2 cut(s) 458, 1032
Bst6I CTCTTC 1 cut(s) 764
BstC8I GCNNGC 4 cut(s) 740, 859, 930, 1228
BstEII GGTNACC 2 cut(s) 72, 1056
BstF5I GGATG 6 cut(s) 298, 367, 592, 654, 685, 826
BstHHI GCGC 1 cut(s) 1209
BstKTI GATC 4 cut(s) 133, 239, 556, 714
BstMAI GTCTC 1 cut(s) 1284
BstMBI GATC 4 cut(s) 130, 236, 553, 711
BstMWI GCNNNNNNNGC 3 cut(s) 284, 899, 1124
BstNI CCWGG 1 cut(s) 658
BstPI GGTNACC 2 cut(s) 72, 1056
BstSCI CCNGG 3 cut(s) 76, 77, 656
BstV1I GCAGC 2 cut(s) 106, 729
BstX2I RGATCY 3 cut(s) 130, 553, 711
BstXI CCANNNNNNTGG 2 cut(s) 602, 661
BstYI RGATCY 3 cut(s) 130, 553, 711
BsuI GTATCC 1 cut(s) 1209
BsuRI GGCC 3 cut(s) 150, 690, 861
BtgZI GCGATG 1 cut(s) 1264
BtsCI GGATG 6 cut(s) 298, 367, 592, 654, 685, 826
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 6 cut(s) 225, 454, 729, 757, 1108, 1209
Cac8I GCNNGC 4 cut(s) 740, 859, 930, 1228
CfoI GCGC 1 cut(s) 1209
Cfr13I GGNCC 5 cut(s) 148, 356, 592, 689, 717
Cfr9I CCCGGG 1 cut(s) 77
Csp6I GTAC 2 cut(s) 372, 774
CviAII CATG 6 cut(s) 274, 611, 765, 904, 980, 1112
CviQI GTAC 2 cut(s) 372, 774
DpnI GATC 4 cut(s) 132, 238, 555, 713
DpnII GATC 4 cut(s) 130, 236, 553, 711
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 800
Eco47I GGWCC 3 cut(s) 356, 592, 717
Eco53kI GAGCTC 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 372
Eco88I CYCGRG 2 cut(s) 77, 810
Eco91I GGTNACC 2 cut(s) 72, 1056
EcoICRI GAGCTC 1 cut(s) 798
EcoO65I GGTNACC 2 cut(s) 72, 1056
EcoRI GAATTC 1 cut(s) 1075
EcoRII CCWGG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 800
FaeI CATG 6 cut(s) 277, 614, 768, 907, 983, 1115
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 2 cut(s) 524, 976
FatI CATG 6 cut(s) 273, 610, 764, 903, 979, 1111
Fnu4HI GCNGC 4 cut(s) 92, 95, 151, 743
FokI GGATG 6 cut(s) 305, 374, 599, 661, 692, 833
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 4 cut(s) 92, 95, 151, 743
FspAI RTGCGCAY 1 cut(s) 1208
FspBI CTAG 4 cut(s) 98, 309, 1170, 1294
FspI TGCGCA 1 cut(s) 1208
GlaI GCGC 1 cut(s) 1208
GluI GCNGC 4 cut(s) 92, 95, 151, 743
HaeIII GGCC 3 cut(s) 150, 690, 861
HapII CCGG 4 cut(s) 78, 359, 387, 1287
HhaI GCGC 1 cut(s) 1209
Hin1II CATG 6 cut(s) 277, 614, 768, 907, 983, 1115
Hin6I GCGC 1 cut(s) 1207
HinP1I GCGC 1 cut(s) 1207
HincII GTYRAC 1 cut(s) 1134
HindII GTYRAC 1 cut(s) 1134
HinfI GANTC 3 cut(s) 761, 1097, 1263
HpaII CCGG 4 cut(s) 78, 359, 387, 1287
HphI GGTGA 9 cut(s) 175, 290, 376, 431, 545, 634, 935, 966, 995
Hpy166II GTNNAC 6 cut(s) 55, 298, 440, 608, 986, 1134
Hpy188I TCNGA 4 cut(s) 130, 352, 1072, 1096
Hpy188III TCNNGA 3 cut(s) 359, 701, 810
Hpy8I GTNNAC 6 cut(s) 55, 298, 440, 608, 986, 1134
HpyAV CCTTC 6 cut(s) 317, 347, 362, 552, 728, 872
HpyCH4III ACNGT 2 cut(s) 458, 1032
HpyCH4V TGCA 8 cut(s) 230, 527, 824, 875, 907, 1118, 1184, 1278
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 899, 1124
Hsp92II CATG 6 cut(s) 277, 614, 768, 907, 983, 1115
HspAI GCGC 1 cut(s) 1207
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 4 cut(s) 130, 236, 553, 711
Lsp1109I GCAGC 2 cut(s) 106, 729
LweI GCATC 6 cut(s) 502, 745, 811, 1105, 1154, 1287
MaeI CTAG 4 cut(s) 98, 309, 1170, 1294
MaeIII GTNAC 7 cut(s) 72, 103, 265, 622, 849, 1056, 1186
MalI GATC 4 cut(s) 132, 238, 555, 713
MboI GATC 4 cut(s) 130, 236, 553, 711
MboII GAAGA 5 cut(s) 377, 721, 743, 781, 898
MflI RGATCY 3 cut(s) 130, 553, 711
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 7 cut(s) 156, 345, 507, 596, 1075, 1138, 1232
MlyI GAGTC 1 cut(s) 770
Mph1103I ATGCAT 1 cut(s) 826
MroI TCCGGA 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 4 cut(s) 561, 696, 791, 831
MslI CAYNNNNRTG 2 cut(s) 178, 272
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 4 cut(s) 78, 359, 387, 1287
MspR9I CCNGG 3 cut(s) 78, 79, 658
Mva1269I GAATGC 2 cut(s) 824, 895
MvaI CCWGG 1 cut(s) 658
MwoI GCNNNNNNNGC 3 cut(s) 284, 899, 1124
NciI CCSGG 2 cut(s) 78, 79
NdeII GATC 4 cut(s) 130, 236, 553, 711
NlaIII CATG 6 cut(s) 277, 614, 768, 907, 983, 1115
NlaIV GGNNCC 3 cut(s) 555, 593, 1225
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 3 cut(s) 265, 622, 849
NsbI TGCGCA 1 cut(s) 1208
NsiI ATGCAT 1 cut(s) 826
PaeR7I CTCGAG 1 cut(s) 810
PctI GAATGC 2 cut(s) 824, 895
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 1097, 1263
PkrI GCNGC 4 cut(s) 93, 96, 152, 744
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 656
PspEI GGTNACC 2 cut(s) 72, 1056
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 555, 593, 1225
PspPI GGNCC 5 cut(s) 148, 356, 592, 689, 717
PsuI RGATCY 3 cut(s) 130, 553, 711
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 2 cut(s) 373, 775
RsaNI GTAC 2 cut(s) 372, 774
RseI CAYNNNNRTG 2 cut(s) 178, 272
SacI GAGCTC 1 cut(s) 800
SaqAI TTAA 4 cut(s) 561, 696, 791, 831
SatI GCNGC 4 cut(s) 92, 95, 151, 743
Sau3AI GATC 4 cut(s) 130, 236, 553, 711
Sau96I GGNCC 5 cut(s) 148, 356, 592, 689, 717
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 3 cut(s) 78, 79, 658
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 6 cut(s) 502, 745, 811, 1105, 1154, 1287
Sfr274I CTCGAG 1 cut(s) 810
SinI GGWCC 3 cut(s) 356, 592, 717
SlaI CTCGAG 1 cut(s) 810
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 2 cut(s) 178, 272
SmlI CTYRAG 2 cut(s) 810, 1192
SmoI CTYRAG 2 cut(s) 810, 1192
SpeI ACTAGT 1 cut(s) 1169
Sse9I AATT 7 cut(s) 156, 345, 507, 596, 1075, 1138, 1232
SsiI CCGC 6 cut(s) 27, 92, 151, 161, 818, 1127
SspI AATATT 1 cut(s) 205
SspMI CTAG 4 cut(s) 98, 309, 1170, 1294
SstI GAGCTC 1 cut(s) 800
StyD4I CCNGG 3 cut(s) 76, 77, 656
TaaI ACNGT 2 cut(s) 458, 1032
TaqI TCGA 3 cut(s) 247, 811, 1148
TasI AATT 7 cut(s) 156, 345, 507, 596, 1075, 1138, 1232
TauI GCSGC 2 cut(s) 94, 153
TfiI GAWTC 2 cut(s) 1097, 1263
Tru1I TTAA 4 cut(s) 561, 696, 791, 831
Tru9I TTAA 4 cut(s) 561, 696, 791, 831
TscAI CASTG 6 cut(s) 232, 461, 729, 757, 1108, 1216
TseFI GTSAC 3 cut(s) 265, 622, 849
TseI GCWGC 2 cut(s) 94, 742
Tsp45I GTSAC 3 cut(s) 265, 622, 849
TspDTI ATGAA 2 cut(s) 242, 378
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 6 cut(s) 232, 461, 729, 757, 1108, 1216
VpaK11BI GGWCC 3 cut(s) 356, 592, 717
XapI RAATTY 2 cut(s) 345, 1075
XcmI CCANNNNNNNNNTGG 2 cut(s) 447, 1256
XhoI CTCGAG 1 cut(s) 810
XmaI CCCGGG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 4 cut(s) 98, 309, 1170, 1294
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.