RchiOBHm_Chr4g0389211

Enhancer of mRNA-decapping protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Forward (+)
4317067 .. 4317618
552 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36237

Sequence Viewer

Length: 294 bp
ATGTTAGAGAAAATGGTAAAAAAAGAAACAGCTGCTGTTGGACAAGCTGTTGTTCGTGCAGTCACTCCAGCTATGCAGAAAACAATAACTTCGGCTATATATGATTGCTTTCAGAGAGGAGTGGGAGATAAAGCAGTTAATCAATTGGAAAAATCAGTTAACTCAAAACTTGAAGCTACTGTATCCAGGCAAATCAAGGTGCAGTTTCAAACATCGGGATGTTCTCAAGTAGCATGGAAGCTTCAGTGGTACCTGCCTTTGAGACGTCATGTAAATCCATGTTTGAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

9.9

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 2 cut(s) 173, 209
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 5 cut(s) 32, 47, 71, 176, 241
AluI AGCT 5 cut(s) 32, 47, 71, 176, 241
Alw26I GTCTC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 187
BciVI GTATCC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 261
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 265
BseBI CCWGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 2 cut(s) 78, 221
BshNI GGYRCC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 251
BspMI ACCTGC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 265
BstF5I GGATG 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 234, 269, 279
CviJI RGCY 6 cut(s) 32, 47, 71, 95, 176, 241
CviKI_1 RGCY 6 cut(s) 32, 47, 71, 95, 176, 241
CviQI GTAC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 237, 272, 282
FaiI YATR 7 cut(s) 74, 98, 100, 102, 235, 270, 280
FatI CATG 3 cut(s) 233, 268, 278
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 237, 272, 282
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 239
HpaI GTTAAC 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 59, 76, 202
HpySE526I ACGT 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 237, 272, 282
KpnI GGTACC 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 81, 172, 199, 266
Lsp1109I GCAGC 1 cut(s) 19
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 61
MfeI CAATTG 1 cut(s) 143
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 1 cut(s) 110
MseI TTAA 2 cut(s) 138, 159
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 187
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 187
NlaIII CATG 3 cut(s) 237, 272, 282
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 138, 159
SatI GCNGC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 187
SetI ASST 8 cut(s) 34, 49, 73, 178, 201, 243, 255, 268
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 268
TasI AATT 1 cut(s) 143
Tru1I TTAA 2 cut(s) 138, 159
Tru9I TTAA 2 cut(s) 138, 159
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 61
TspRI CASTG 1 cut(s) 251
ZraI GACGTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.