RLG00000009990

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61542686 .. 61545741
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009990

Sequence Viewer

Length: 1056 bp
ATGCTATGGATTGAAGCAGGGGAATATTCGGGTGTGAGTGTAGAAGGACAGCTTTTTGTCTGGAAAATTTCTGAAGGTCCAGACGAAGATGGTATGCCACGAATCACAGGAAAGATTGTTATGGCCATTCAAATACAGGTTTTGGTTGTTCGGGTTAGGAAGCGTGTTCTACAGATTGATACTACTAAAGTTGCAAATGGTAAAGTTCCTTCTGCTGAGGATCCTATTAAGTTTCCTGTTGAAAAGCTTATTGATGGGGTCCAATTTGTTGGTAAACATGACGGAAAGATGACAGATTTTATCAATGTGCCAATGGATGACCACCTGGCTGGTTTCTGCTTCTATGGATGGAACTGTAGGATAACTTATTGTTCTTGTCCTTCAAAGCCCTTTTATGTTAGAATCACTAATGATTTGGGCGGAGGAATGAATATCACCTTTCACTGTAAATCCGCAGATGATGATCTCGGCGTCAAAGTAACAAGCGAACCAATAGTGATATACACCAACAGTGGTGAGACCATTTGTTGGTCAGAGCAAGCAATGGGTGCCATTGAGTGGGGGGTTGATGAAGAGTTTGCAGACAGTGACGTGAGGCTGGGGCTTCCCTATGTTGCATTGAGCGCGTGCTCGAAGATTGTGCCTTTCTGTGAAGGGGTTCAGCTCCATGGGTCGCTTGTGAAGATGGGTTTGGAGGAACACGTGTTTGTAGGGAACTGGATCATGCCCGGAAGGTGTTTGAAGAAATGCTTGAGAGAAATAGTGTGTCGTGGACTAGTTCGATTTGTGCCAATGGTGACTATGGTGCGTGTCATTTCTGCTTGTGCAAAGTTGAAGGATGTTGCGTTGAGTGAGAGAGTGTTGGGCTTACGTGCTGCAAAGTGTCTTTTTGATGAACATGTGGATAAAAACTTGGTTCTTTACAGTAGGGATTTGTCAAATTATGTGCGCCAGGGACTGGCTGGTGAAGCAGTTTCGGTGATGGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGGCATTTTGTTTGCAATCTCAGCTTTCGCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

38.92

Weight (kDa)

6.02

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 548
AccB7I CCANNNNNTGG 3 cut(s) 528, 558, 958
AccII CGCG 1 cut(s) 626
AciI CCGC 2 cut(s) 420, 453
AclWI GGATC 3 cut(s) 215, 228, 728
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 93
AcvI CACGTG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 471
AfiI CCNNNNNNNGG 3 cut(s) 528, 558, 958
AflIII ACRYGT 3 cut(s) 700, 702, 898
AgsI TTSAA 6 cut(s) 14, 131, 242, 384, 742, 835
AhlI ACTAGT 1 cut(s) 775
AjiI CACGTC 1 cut(s) 592
AjnI CCWGG 2 cut(s) 324, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 4 cut(s) 52, 247, 664, 1042
AluI AGCT 4 cut(s) 52, 247, 664, 1042
Alw21I GWGCWC 1 cut(s) 632
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 3 cut(s) 215, 228, 728
AlwNI CAGNNNCTG 1 cut(s) 958
AoxI GGCC 2 cut(s) 123, 1003
ApeKI GCWGC 1 cut(s) 875
ApoI RAATTY 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 2 cut(s) 626, 951
AspS9I GGNCC 3 cut(s) 77, 259, 1003
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 6 cut(s) 427, 527, 808, 977, 991, 998
AvaII GGWCC 2 cut(s) 77, 259
BalI TGGCCA 1 cut(s) 125
BamHI GGATCC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 548
BarI GAAGNNNNNNTAC 2 cut(s) 193, 225
BbrPI CACGTG 1 cut(s) 703
Bbv12I GWGCWC 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 862
BccI CCATC 5 cut(s) 83, 248, 342, 679, 976
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 2 cut(s) 326, 953
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 1 cut(s) 512
BcuI ACTAGT 1 cut(s) 775
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 2 cut(s) 170, 355
BisI GCNGC 1 cut(s) 876
BlsI GCNGC 1 cut(s) 877
Bme1390I CCNGG 3 cut(s) 326, 729, 953
Bme18I GGWCC 2 cut(s) 77, 259
BmgBI CACGTC 1 cut(s) 592
BmgT120I GGNCC 3 cut(s) 77, 259, 1003
BmiI GGNNCC 3 cut(s) 222, 260, 550
BmrFI CCNGG 3 cut(s) 326, 729, 953
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 772
BpuMI CCSGG 1 cut(s) 729
BsaAI YACGTR 2 cut(s) 703, 872
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 667, 952
Bsc4I CCNNNNNNNGG 3 cut(s) 528, 558, 958
Bse1I ACTGG 2 cut(s) 722, 963
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 2 cut(s) 326, 953
BseDI CCNNGG 2 cut(s) 667, 952
BseGI GGATG 3 cut(s) 322, 353, 844
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 528, 558, 958
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 2 cut(s) 207, 1052
BseNI ACTGG 2 cut(s) 722, 963
BseXI GCAGC 1 cut(s) 862
BseYI CCCAGC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 626
BshFI GGCC 2 cut(s) 125, 1005
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 632
BsiSI CCGG 1 cut(s) 729
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 3 cut(s) 528, 558, 958
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 969
BsnI GGCC 2 cut(s) 125, 1005
Bso31I GGTCTC 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 3 cut(s) 220, 463, 720
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 2 cut(s) 420, 453
BspANI GGCC 2 cut(s) 125, 1005
BspCNI CTCAG 2 cut(s) 208, 1051
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 3 cut(s) 222, 260, 550
BspPI GGATC 3 cut(s) 215, 228, 728
BspT107I GGYRCC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 2 cut(s) 722, 963
BssECI CCNNGG 2 cut(s) 667, 952
BssMI GATC 3 cut(s) 220, 463, 720
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 667
Bst2UI CCWGG 2 cut(s) 326, 953
Bst4CI ACNGT 5 cut(s) 356, 446, 512, 587, 926
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 471
BstAPI GCANNNNNTGC 1 cut(s) 548
BstBAI YACGTR 2 cut(s) 703, 872
BstC8I GCNNGC 2 cut(s) 540, 628
BstDEI CTNAG 3 cut(s) 216, 1007, 1038
BstDSI CCRYGG 1 cut(s) 667
BstF5I GGATG 3 cut(s) 322, 353, 844
BstFNI CGCG 1 cut(s) 626
BstHHI GCGC 2 cut(s) 626, 951
BstKTI GATC 3 cut(s) 223, 466, 723
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 3 cut(s) 220, 463, 720
BstMWI GCNNNNNNNGC 4 cut(s) 548, 623, 968, 1039
BstNI CCWGG 2 cut(s) 326, 953
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 3 cut(s) 324, 727, 951
BstSFI CTRYAG 2 cut(s) 170, 355
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 862
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 2 cut(s) 269, 329
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 125, 1005
BtgI CCRYGG 1 cut(s) 667
BtrI CACGTC 1 cut(s) 592
BtsCI GGATG 3 cut(s) 322, 353, 844
BtsIMutI CAGTG 3 cut(s) 442, 517, 592
Cac8I GCNNGC 2 cut(s) 540, 628
CaiI CAGNNNCTG 1 cut(s) 958
CfoI GCGC 2 cut(s) 626, 951
Cfr13I GGNCC 3 cut(s) 77, 259, 1003
CseI GACGC 1 cut(s) 460
CviAII CATG 4 cut(s) 278, 668, 724, 899
DdeI CTNAG 3 cut(s) 216, 1007, 1038
DpnI GATC 3 cut(s) 222, 465, 722
DpnII GATC 3 cut(s) 220, 463, 720
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 2 cut(s) 77, 259
Eco57I CTGAAG 1 cut(s) 93
Eco72I CACGTG 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 1003
EcoRII CCWGG 2 cut(s) 324, 951
EcoT14I CCWWGG 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 4 cut(s) 281, 671, 727, 902
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 734, 766
FaqI GGGAC 1 cut(s) 969
FatI CATG 4 cut(s) 277, 667, 723, 898
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 3 cut(s) 329, 360, 851
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 1 cut(s) 776
GlaI GCGC 2 cut(s) 625, 950
GluI GCNGC 1 cut(s) 876
GsaI CCCAGC 1 cut(s) 602
HaeIII GGCC 2 cut(s) 125, 1005
HapII CCGG 1 cut(s) 729
HgaI GACGC 1 cut(s) 460
HhaI GCGC 2 cut(s) 626, 951
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 4 cut(s) 281, 671, 727, 902
Hin6I GCGC 2 cut(s) 624, 949
HinP1I GCGC 2 cut(s) 624, 949
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 102, 402
HpaII CCGG 1 cut(s) 729
HphI GGTGA 6 cut(s) 427, 527, 808, 977, 991, 998
Hpy166II GTNNAC 2 cut(s) 275, 773
Hpy188I TCNGA 2 cut(s) 73, 535
Hpy188III TCNNGA 2 cut(s) 61, 80
Hpy8I GTNNAC 2 cut(s) 275, 773
HpyAV CCTTC 7 cut(s) 38, 68, 219, 390, 647, 726, 829
HpyCH4III ACNGT 5 cut(s) 356, 446, 512, 587, 926
HpyCH4IV ACGT 3 cut(s) 591, 702, 871
HpyCH4V TGCA 6 cut(s) 194, 581, 617, 827, 878, 1033
HpyF10VI GCNNNNNNNGC 4 cut(s) 548, 623, 968, 1039
HpyF3I CTNAG 3 cut(s) 216, 1007, 1038
HpySE526I ACGT 3 cut(s) 591, 702, 871
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 4 cut(s) 281, 671, 727, 902
HspAI GCGC 2 cut(s) 624, 949
Kzo9I GATC 3 cut(s) 220, 463, 720
LmnI GCTCC 1 cut(s) 669
Lsp1109I GCAGC 1 cut(s) 862
MaeI CTAG 1 cut(s) 776
MaeII ACGT 3 cut(s) 591, 702, 871
MaeIII GTNAC 3 cut(s) 478, 587, 796
MalI GATC 3 cut(s) 222, 465, 722
MboI GATC 3 cut(s) 220, 463, 720
MboII GAAGA 5 cut(s) 98, 584, 646, 694, 754
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 632
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 3 cut(s) 66, 263, 940
MluNI TGGCCA 1 cut(s) 125
MnlI CCTC 4 cut(s) 211, 416, 588, 688
Mox20I TGGCCA 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 125
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 125
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 3 cut(s) 326, 729, 953
MvaI CCWGG 2 cut(s) 326, 953
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 4 cut(s) 548, 623, 968, 1039
NciI CCSGG 1 cut(s) 729
NcoI CCATGG 1 cut(s) 667
NdeII GATC 3 cut(s) 220, 463, 720
NlaIII CATG 4 cut(s) 281, 671, 727, 902
NlaIV GGNNCC 3 cut(s) 222, 260, 550
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 587, 796
NspI RCATGY 1 cut(s) 902
PciI ACATGT 1 cut(s) 898
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 102, 402
PflMI CCANNNNNTGG 3 cut(s) 528, 558, 958
PkrI GCNGC 1 cut(s) 877
PmaCI CACGTG 1 cut(s) 703
PmlI CACGTG 1 cut(s) 703
Ppu21I YACGTR 2 cut(s) 703, 872
PscI ACATGT 1 cut(s) 898
Psp6I CCWGG 2 cut(s) 324, 951
PspCI CACGTG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 2 cut(s) 324, 951
PspN4I GGNNCC 3 cut(s) 222, 260, 550
PspPI GGNCC 3 cut(s) 77, 259, 1003
PstNI CAGNNNCTG 1 cut(s) 958
PsuI RGATCY 1 cut(s) 220
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 3 cut(s) 220, 463, 720
Sau96I GGNCC 3 cut(s) 77, 259, 1003
ScrFI CCNGG 3 cut(s) 326, 729, 953
SduI GDGCHC 1 cut(s) 632
SfcI CTRYAG 2 cut(s) 170, 355
SinI GGWCC 2 cut(s) 77, 259
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
SpeI ACTAGT 1 cut(s) 775
Sse9I AATT 3 cut(s) 66, 263, 940
SsiI CCGC 2 cut(s) 420, 453
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 3 cut(s) 324, 727, 951
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 5 cut(s) 356, 446, 512, 587, 926
TaiI ACGT 3 cut(s) 594, 705, 874
TaqI TCGA 2 cut(s) 632, 781
TasI AATT 3 cut(s) 66, 263, 940
TfiI GAWTC 2 cut(s) 102, 402
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 3 cut(s) 449, 517, 592
TseFI GTSAC 2 cut(s) 587, 796
TseI GCWGC 1 cut(s) 875
Tsp45I GTSAC 2 cut(s) 587, 796
TspDTI ATGAA 3 cut(s) 443, 585, 909
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 3 cut(s) 449, 517, 592
Van91I CCANNNNNTGG 3 cut(s) 528, 558, 958
VpaK11BI GGWCC 2 cut(s) 77, 259
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.