Rmu_ssc0000211.1_g000011

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000211.1
Physical Location & Seq
Reverse (-)
52456 .. 55459
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000211.1_g000011.1.cds

Sequence Viewer

Length: 975 bp
atggaaaggttacaaactctggccaaggttcctacatatatggtgattgctgatctagctgaatttgagatgactgcaaatgagctagaagcaaaggcatccgatcttggaattgagatagcctgggattgctgtgcaatatcattagaatcttatattacagatgaagcttggcaaggtgatggtgccagcatgtcagaaccactagcccagcctcattctggagaggaagaccacgatcactctacaaaagatgtatctgggtcagctaccgccacaaccgcatcacaactacaaacaccaaatgcaaagtcgagaaaacagaaatggaaaaatatgcaagcatcaggtcaatcttccccatcaccaggtgtgctcaactcaatagagccctctaatgaagcaggtgggagttcaagtcccccctccggagaagctgcatttcctcaaattatggccaggcaggatatgatgaatcagagaggagtgggagataaagcggttaatcaattggaaaaatcagttaactcaaaacttgaagctactgtatccaggcaaatcaaggtgcagtttcaaacatcgggtaaagaagctcttcaagatgctctcaagtctagcatggaagcttcagtggtacttgcctttgagacgtcatgtaaatccatgtttgagcaagtagatgccagattaccgaaaggaatggttgaacatgcaactgtggctcagcagcaatttgagtctgcacattcgctgttggcccatgctgaaactattagcttcgcatcatcagagactcaaaccctaagcggtgaactggctaatggtcaacgtaagttagttgctcttgcagttgcacgggaaaactcaagtgcagtaaattttgactgttgttcaccctgtgtaatgcattgtggtagtcagcattctgatcataatggggcagtctatctggattgttactgcattagaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

324

Amino Acids

34.77

Weight (kDa)

4.96

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 395
AatII GACGTC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 428
AciI CCGC 4 cut(s) 273, 282, 500, 807
AcoI YGGCCR 2 cut(s) 21, 456
AcsI RAATTY 2 cut(s) 62, 877
AcuI CTGAAG 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 650
AdeI CACNNNGTG 2 cut(s) 371, 899
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 3 cut(s) 221, 368, 428
AgsI TTSAA 5 cut(s) 417, 539, 575, 599, 707
AjnI CCWGG 4 cut(s) 122, 367, 458, 551
AluBI AGCT 9 cut(s) 59, 85, 170, 269, 437, 542, 593, 626, 777
AluI AGCT 9 cut(s) 59, 85, 170, 269, 437, 542, 593, 626, 777
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 2 cut(s) 641, 785
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 3 cut(s) 21, 456, 756
ApeKI GCWGC 2 cut(s) 437, 727
ApoI RAATTY 2 cut(s) 62, 877
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 1 cut(s) 594
AspS9I GGNCC 1 cut(s) 757
AsuHPI GGTGA 5 cut(s) 55, 191, 357, 821, 885
BalI TGGCCA 2 cut(s) 23, 458
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 424, 739
BccI CCATC 2 cut(s) 176, 370
BciT130I CCWGG 4 cut(s) 124, 369, 460, 553
BciVI GTATCC 1 cut(s) 559
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 641, 785
BfaI CTAG 4 cut(s) 56, 86, 206, 615
BfuAI ACCTGC 1 cut(s) 395
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 2 cut(s) 438, 728
BlpI GCTNAGC 1 cut(s) 723
BlsI GCNGC 2 cut(s) 439, 729
Bme1390I CCNGG 4 cut(s) 124, 369, 460, 553
BmgT120I GGNCC 1 cut(s) 757
BmiI GGNNCC 2 cut(s) 30, 187
BmrFI CCNGG 4 cut(s) 124, 369, 460, 553
BmsI GCATC 6 cut(s) 107, 293, 353, 592, 670, 791
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 723
BpuEI CTTGAG 2 cut(s) 593, 850
BsaHI GRCGYC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 24, 123
BsaWI WCCGGW 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 368, 428
Bse1I ACTGG 1 cut(s) 819
BseAI TCCGGA 1 cut(s) 428
BseBI CCWGG 4 cut(s) 124, 369, 460, 553
BseDI CCNNGG 2 cut(s) 24, 123
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 221, 368, 428
BseMII CTCAG 1 cut(s) 737
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 2 cut(s) 424, 739
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 3 cut(s) 587, 726, 891
BshFI GGCC 3 cut(s) 23, 458, 758
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 221, 368, 428
BsmAI GTCTC 2 cut(s) 641, 785
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 405
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 3 cut(s) 23, 458, 758
Bsp1286I GDGCHC 2 cut(s) 378, 393
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 4 cut(s) 52, 103, 238, 928
Bsp1720I GCTNAGC 1 cut(s) 723
BspACI CCGC 4 cut(s) 273, 282, 500, 807
BspANI GGCC 3 cut(s) 23, 458, 758
BspCNI CTCAG 1 cut(s) 736
BspEI TCCGGA 1 cut(s) 428
BspLI GGNNCC 2 cut(s) 30, 187
BspMI ACCTGC 1 cut(s) 395
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 819
BssECI CCNNGG 2 cut(s) 24, 123
BssMI GATC 4 cut(s) 52, 103, 238, 928
BssNI GRCGYC 1 cut(s) 650
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 4 cut(s) 124, 369, 460, 553
Bst4CI ACNGT 3 cut(s) 547, 718, 887
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 190, 342
BstDEI CTNAG 2 cut(s) 723, 803
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 4 cut(s) 55, 106, 241, 931
BstMAI GTCTC 2 cut(s) 641, 785
BstMBI GATC 4 cut(s) 52, 103, 238, 928
BstMWI GCNNNNNNNGC 3 cut(s) 56, 281, 719
BstNI CCWGG 4 cut(s) 124, 369, 460, 553
BstNSI RCATGY 2 cut(s) 196, 713
BstSCI CCNGG 4 cut(s) 122, 367, 458, 551
BstV1I GCAGC 2 cut(s) 424, 739
BstV2I GAAGAC 1 cut(s) 237
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 3 cut(s) 23, 458, 758
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 636
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 2 cut(s) 190, 342
Cfr13I GGNCC 1 cut(s) 757
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 1 cut(s) 635
CviAII CATG 6 cut(s) 193, 619, 654, 664, 710, 761
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 2 cut(s) 723, 803
DpnI GATC 4 cut(s) 54, 105, 240, 930
DpnII GATC 4 cut(s) 52, 103, 238, 928
DraIII CACNNNGTG 2 cut(s) 371, 899
EaeI YGGCCR 2 cut(s) 21, 456
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 612
EcoRII CCWGG 4 cut(s) 122, 367, 458, 551
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 909
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 6 cut(s) 196, 622, 657, 667, 713, 764
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 405
FatI CATG 6 cut(s) 192, 618, 653, 663, 709, 760
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 2 cut(s) 438, 728
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 2 cut(s) 438, 728
FspBI CTAG 4 cut(s) 56, 86, 206, 615
GluI GCNGC 2 cut(s) 438, 728
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 3 cut(s) 23, 458, 758
HapII CCGG 1 cut(s) 429
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 6 cut(s) 196, 622, 657, 667, 713, 764
HincII GTYRAC 2 cut(s) 526, 827
HindII GTYRAC 2 cut(s) 526, 827
HindIII AAGCTT 2 cut(s) 168, 624
HinfI GANTC 5 cut(s) 149, 475, 737, 793, 969
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 1 cut(s) 429
HphI GGTGA 5 cut(s) 55, 191, 357, 821, 885
Hpy166II GTNNAC 4 cut(s) 526, 812, 827, 893
Hpy188I TCNGA 6 cut(s) 103, 199, 480, 790, 928, 974
Hpy188III TCNNGA 5 cut(s) 222, 315, 429, 599, 950
Hpy8I GTNNAC 4 cut(s) 526, 812, 827, 893
HpyCH4III ACNGT 3 cut(s) 547, 718, 887
HpyCH4IV ACGT 2 cut(s) 650, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 281, 719
HpyF3I CTNAG 2 cut(s) 723, 803
HpySE526I ACGT 2 cut(s) 650, 829
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 6 cut(s) 196, 622, 657, 667, 713, 764
Kpn2I TCCGGA 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 928
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 4 cut(s) 52, 103, 238, 928
LguI GCTCTTC 1 cut(s) 600
Lsp1109I GCAGC 2 cut(s) 424, 739
LweI GCATC 6 cut(s) 107, 293, 353, 592, 670, 791
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 4 cut(s) 56, 86, 206, 615
MaeII ACGT 2 cut(s) 650, 829
MaeIII GTNAC 2 cut(s) 9, 956
MalI GATC 4 cut(s) 54, 105, 240, 930
MboI GATC 4 cut(s) 52, 103, 238, 928
MboII GAAGA 3 cut(s) 242, 348, 587
MfeI CAATTG 1 cut(s) 509
MhlI GDGCHC 2 cut(s) 378, 393
MlsI TGGCCA 2 cut(s) 23, 458
MluCI AATT 6 cut(s) 62, 111, 450, 509, 731, 877
MluNI TGGCCA 2 cut(s) 23, 458
MlyI GAGTC 2 cut(s) 746, 787
MnlI CCTC 6 cut(s) 220, 225, 403, 436, 456, 476
Mox20I TGGCCA 2 cut(s) 23, 458
Mph1103I ATGCAT 1 cut(s) 909
MroI TCCGGA 1 cut(s) 428
MroXI GAANNNNTTC 1 cut(s) 594
MscI TGGCCA 2 cut(s) 23, 458
MseI TTAA 2 cut(s) 504, 525
Msp20I TGGCCA 2 cut(s) 23, 458
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 4 cut(s) 124, 369, 460, 553
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 4 cut(s) 124, 369, 460, 553
MwoI GCNNNNNNNGC 3 cut(s) 56, 281, 719
NdeII GATC 4 cut(s) 52, 103, 238, 928
NlaIII CATG 6 cut(s) 196, 622, 657, 667, 713, 764
NlaIV GGNNCC 2 cut(s) 30, 187
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 2 cut(s) 196, 713
PaqCI CACCTGC 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 600
PctI GAATGC 1 cut(s) 922
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 3 cut(s) 149, 475, 969
PkrI GCNGC 2 cut(s) 439, 729
PleI GAGTC 2 cut(s) 745, 787
PpsI GAGTC 2 cut(s) 745, 787
Psp6I CCWGG 4 cut(s) 122, 367, 458, 551
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 4 cut(s) 122, 367, 458, 551
PspN4I GGNNCC 2 cut(s) 30, 187
PspPI GGNCC 1 cut(s) 757
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 2 cut(s) 504, 525
SatI GCNGC 2 cut(s) 438, 728
Sau3AI GATC 4 cut(s) 52, 103, 238, 928
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 2 cut(s) 746, 787
ScrFI CCNGG 4 cut(s) 124, 369, 460, 553
SduI GDGCHC 2 cut(s) 378, 393
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 6 cut(s) 107, 293, 353, 592, 670, 791
SmlI CTYRAG 2 cut(s) 608, 865
SmoI CTYRAG 2 cut(s) 608, 865
Sse9I AATT 6 cut(s) 62, 111, 450, 509, 731, 877
SsiI CCGC 4 cut(s) 273, 282, 500, 807
SspMI CTAG 4 cut(s) 56, 86, 206, 615
StyD4I CCNGG 4 cut(s) 122, 367, 458, 551
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 547, 718, 887
TaiI ACGT 2 cut(s) 653, 832
TaqI TCGA 1 cut(s) 314
TasI AATT 6 cut(s) 62, 111, 450, 509, 731, 877
TfiI GAWTC 3 cut(s) 149, 475, 969
Tru1I TTAA 2 cut(s) 504, 525
Tru9I TTAA 2 cut(s) 504, 525
TscAI CASTG 1 cut(s) 636
TseI GCWGC 2 cut(s) 437, 727
TspDTI ATGAA 3 cut(s) 180, 414, 488
TspRI CASTG 1 cut(s) 636
XapI RAATTY 2 cut(s) 62, 877
XceI RCATGY 2 cut(s) 196, 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 4 cut(s) 56, 86, 206, 615
ZraI GACGTC 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.