Rh4BG010000

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000324
Physical Location & Seq
Reverse (-)
1470124 .. 1471769
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG010000.1

Sequence Viewer

Length: 564 bp
ATGATGAATCAGCTAATGACTGTGCAAAATGATTTGCAAAAGCAGATGACAATGATGATTACCGTCCCAATTACAAAGGAAGGAAAACGAATAGAGGCGGCTCTCGGTCGGAGTATGGAGAAGGCTGTAAAGGCCAATAATGTTGCTCTGTGGGCTCGGTTTCAAGAAGAGAATGCAAAGAATGAGAAATTATTGCGAGACCGTACTAAACCAGTAACTGCTGTTGTTCGTGCAATCACTCCAGCTATGGAGAAAACAATACCTTTGGCTATATCTGATTGGTTTCAGAGAGAAGTGGGAGATAAAGCAGTTAATCAATTGAAAAATCAGTTAATTCAAAACTTGAAGATACTGTATCCAGGCAAATCAAGGCGCAGTTTCAAACATCGGGTAAACAAGCTCTTCAGCATGGAAGCTTCAGTGGTACCTGCCTTTGAGAAGTCATGTAAAGCCATGTTTGAGCAAGTAGATGCCACATTCCAGAAAGGAATGGTTGAACATGCAACTGTGGCTCCGCAGCATTATGAGTCTGCACTTTCGCCATTGGCCCATGGAAGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

187

Amino Acids

21.21

Weight (kDa)

9.8

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AciI CCGC 2 cut(s) 98, 515
AcuI CTGAAG 2 cut(s) 388, 402
AfaI GTAC 2 cut(s) 205, 426
AgsI TTSAA 6 cut(s) 164, 322, 338, 346, 382, 497
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 5 cut(s) 13, 245, 400, 416, 558
AluI AGCT 5 cut(s) 13, 245, 400, 416, 558
Alw26I GTCTC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 132, 546
ApeKI GCWGC 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 424
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 360
BciVI GTATCC 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 436
BfuI GTATCC 1 cut(s) 366
BisI GCNGC 2 cut(s) 99, 518
BlsI GCNGC 2 cut(s) 100, 519
Bme1390I CCNGG 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 2 cut(s) 426, 513
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 550
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 550
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 516
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 134, 548
BshNI GGYRCC 1 cut(s) 424
BsiEI CGRYCG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 134, 548
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 2 cut(s) 98, 515
BspANI GGCC 2 cut(s) 134, 548
BspLI GGNNCC 2 cut(s) 426, 513
BspMI ACCTGC 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 5 cut(s) 22, 64, 203, 354, 508
Bst6I CTCTTC 2 cut(s) 162, 407
BstDSI CCRYGG 1 cut(s) 550
BstHHI GCGC 1 cut(s) 375
BstMAI GTCTC 1 cut(s) 192
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 131, 152, 509
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 529
BsuI GTATCC 1 cut(s) 366
BsuRI GGCC 2 cut(s) 134, 548
BtgI CCRYGG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 426
BveI ACCTGC 1 cut(s) 436
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 2 cut(s) 204, 425
CviAII CATG 5 cut(s) 409, 444, 454, 500, 551
CviQI GTAC 2 cut(s) 204, 425
Eam1104I CTCTTC 2 cut(s) 162, 407
EarI CTCTTC 2 cut(s) 162, 407
Eco130I CCWWGG 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 388, 402
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 5 cut(s) 412, 447, 457, 503, 554
FaiI YATR 9 cut(s) 116, 248, 272, 410, 445, 455, 501, 525, 552
FaqI GGGAC 1 cut(s) 50
FatI CATG 5 cut(s) 408, 443, 453, 499, 550
Fnu4HI GCNGC 2 cut(s) 99, 518
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 99, 518
GlaI GCGC 1 cut(s) 374
GluI GCNGC 2 cut(s) 99, 518
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 2 cut(s) 134, 548
HhaI GCGC 1 cut(s) 375
Hin1II CATG 5 cut(s) 412, 447, 457, 503, 554
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 2 cut(s) 7, 527
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 3 cut(s) 111, 277, 288
Hpy188III TCNNGA 2 cut(s) 164, 481
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 74, 115
HpyCH4III ACNGT 5 cut(s) 22, 64, 203, 354, 508
HpyCH4V TGCA 6 cut(s) 25, 37, 176, 233, 503, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 152, 509
Hsp92II CATG 5 cut(s) 412, 447, 457, 503, 554
HspAI GCGC 1 cut(s) 373
KpnI GGTACC 1 cut(s) 428
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 6 cut(s) 225, 255, 345, 372, 441, 494
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 3 cut(s) 179, 358, 394
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 4 cut(s) 69, 188, 317, 333
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 1 cut(s) 88
MseI TTAA 2 cut(s) 312, 332
MspR9I CCNGG 1 cut(s) 360
MunI CAATTG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 3 cut(s) 131, 152, 509
NcoI CCATGG 1 cut(s) 550
NlaIII CATG 5 cut(s) 412, 447, 457, 503, 554
NlaIV GGNNCC 2 cut(s) 426, 513
NspI RCATGY 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 407
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 100, 519
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 426, 513
PspPI GGNCC 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 205, 426
RsaNI GTAC 2 cut(s) 204, 425
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 312, 332
SatI GCNGC 2 cut(s) 99, 518
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 157
SetI ASST 7 cut(s) 15, 247, 265, 402, 418, 430, 560
SfaNI GCATC 1 cut(s) 460
Sse9I AATT 4 cut(s) 69, 188, 317, 333
SsiI CCGC 2 cut(s) 98, 515
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 5 cut(s) 22, 64, 203, 354, 508
TaqII GACCGA 1 cut(s) 95
TasI AATT 4 cut(s) 69, 188, 317, 333
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 312, 332
Tru9I TTAA 2 cut(s) 312, 332
TscAI CASTG 1 cut(s) 426
TseI GCWGC 1 cut(s) 517
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 426
XceI RCATGY 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.