Rh5AG494200

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
84064081 .. 84067624
3544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG494200.1

Sequence Viewer

Length: 852 bp
ATGGCGTCCCCCGGAAACCCCAATCCGCCGCCGCCGCAGCAGCAGCAGCAGCCCTTCGACATGGCCAAGTTCTTTAAACCCACGAGCCCAACCCCTCTCTCCCCCCATTCCCAGCCTCAAACCCAGGCCCCCACCCAAAACCCTAACCCTAATCTGAACTCCTCAGGCTTCCCAATCCCTCCGGCCTCTTACCCTCCCCCCTCTGGGCCCTACTCCTATCCTCCCCAAACGGCGCCGTATCACCAGCAGCAATTCCAGTACCAGCACCACCCTCAGCCTCATCCTCACAACCACCCCCAAATTCCTTACCCTCAAGACCACCAGGTGCTTCAACAGCGGTCGCTCTCGTTTCCCATCCCGCCCCTGGCTCCCGGTAATTACAACATTGCCGCCACCGCCGCCTCCTCCAACCCCGGAAACGCCACCACCACCAACCCCAATTCCGGCGCCCGAATCATGGCCCTGCTCGGTGCTCCTTCCTCCAGTCTAGAAATGCCGCCGCAGCCTGAGTTGTCGGTCCCCGGCTCTGGCGGGGTTTCGATGGTGCCCACTCTTCCTATGGGGATTCCACCCTCCCCGGCTCGAATGCCGAGCAATAAGCTGCCGAAGGGCAGGCATTTGATTGGGGATAGCGTGGTTTACGATGTGGATGTTAGGTTGCCCGGGGAGTTTCAGCCGCAGCTGGAAGTTACCCCCATTACTAAGTATGGTTCGGATCCTCAGCTGGTGTTGGGCCGCCAAATTGCGGTGAATAAGTCGTATATATGCTATGGATTGAAGCAGGGGAATATTCGGGTTTTGAATATACACACTGCATTGAGATCTTTGTTTCGAGCTCATACACAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

283

Amino Acids

30.6

Weight (kDa)

9.49

Isoelectric Point (pI)

67.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 232, 446, 544
AclWI GGATC 2 cut(s) 710, 723
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 300
AcyI GRCGYC 3 cut(s) 5, 233, 447
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 7 cut(s) 203, 204, 364, 443, 457, 527, 745
AgsI TTSAA 3 cut(s) 332, 778, 802
AjnI CCWGG 3 cut(s) 123, 321, 363
AluBI AGCT 4 cut(s) 601, 682, 724, 836
AluI AGCT 4 cut(s) 601, 682, 724, 836
Alw21I GWGCWC 2 cut(s) 475, 838
AlwI GGATC 2 cut(s) 710, 723
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 6 cut(s) 63, 126, 183, 206, 459, 733
ApaI GGGCCC 1 cut(s) 210
ApeKI GCWGC 9 cut(s) 37, 40, 43, 46, 49, 247, 502, 601, 679
ApoI RAATTY 1 cut(s) 300
AspLEI GCGC 2 cut(s) 235, 449
AspS9I GGNCC 6 cut(s) 127, 206, 207, 460, 517, 733
AsuC2I CCSGG 7 cut(s) 12, 372, 414, 522, 578, 663, 664
AsuHPI GGTGA 2 cut(s) 233, 760
AvaI CYCGRG 1 cut(s) 662
AvaII GGWCC 1 cut(s) 517
AxyI CCTNAGG 1 cut(s) 163
BaeGI GKGCMC 2 cut(s) 210, 549
BalI TGGCCA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 715
BanI GGYRCC 3 cut(s) 232, 446, 544
BanII GRGCYC 3 cut(s) 89, 210, 838
BauI CACGAG 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 475, 838
BbvCI CCTCAGC 2 cut(s) 273, 720
BbvI GCAGC 9 cut(s) 49, 52, 55, 58, 61, 259, 514, 588, 691
BccI CCATC 2 cut(s) 362, 535
BceAI ACGGC 2 cut(s) 220, 246
BciT130I CCWGG 3 cut(s) 125, 323, 365
BcnI CCSGG 7 cut(s) 12, 372, 414, 522, 578, 663, 664
BfaI CTAG 1 cut(s) 488
BfoI RGCGCY 2 cut(s) 236, 450
BglII AGATCT 1 cut(s) 821
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 662
BmgT120I GGNCC 6 cut(s) 127, 206, 207, 460, 517, 733
BmiI GGNNCC 8 cut(s) 129, 208, 234, 369, 448, 519, 546, 717
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 2 cut(s) 273, 720
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 7 cut(s) 12, 372, 414, 522, 578, 663, 664
BsaHI GRCGYC 3 cut(s) 5, 233, 447
BsaJI CCNNGG 8 cut(s) 10, 123, 363, 412, 520, 576, 662, 663
Bsc4I CCNNNNNNNGG 7 cut(s) 203, 204, 364, 443, 457, 527, 745
Bse1I ACTGG 2 cut(s) 256, 483
Bse21I CCTNAGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 3 cut(s) 125, 323, 365
BseDI CCNNGG 8 cut(s) 10, 123, 363, 412, 520, 576, 662, 663
BseGI GGATG 3 cut(s) 280, 354, 655
BseLI CCNNNNNNNGG 7 cut(s) 203, 204, 364, 443, 457, 527, 745
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 4 cut(s) 177, 287, 498, 734
BseNI ACTGG 2 cut(s) 256, 483
BseRI GAGGAG 2 cut(s) 151, 394
BseSI GKGCMC 2 cut(s) 210, 549
BseXI GCAGC 9 cut(s) 49, 52, 55, 58, 61, 259, 514, 588, 691
BseYI CCCAGC 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 341
BshFI GGCC 6 cut(s) 65, 128, 185, 208, 461, 735
BshNI GGYRCC 3 cut(s) 232, 446, 544
BsiEI CGRYCG 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 475, 838
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 8 cut(s) 12, 182, 372, 414, 444, 522, 578, 663
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 7 cut(s) 203, 204, 364, 443, 457, 527, 745
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 6 cut(s) 65, 128, 185, 208, 461, 735
BsoBI CYCGRG 1 cut(s) 662
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 5 cut(s) 89, 210, 475, 549, 838
Bsp143I GATC 2 cut(s) 715, 821
BspANI GGCC 6 cut(s) 65, 128, 185, 208, 461, 735
BspCNI CTCAG 4 cut(s) 176, 286, 499, 733
BspLI GGNNCC 8 cut(s) 129, 208, 234, 369, 448, 519, 546, 717
BspPI GGATC 2 cut(s) 710, 723
BspT107I GGYRCC 3 cut(s) 232, 446, 544
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 256, 483
BssECI CCNNGG 8 cut(s) 10, 123, 363, 412, 520, 576, 662, 663
BssMI GATC 2 cut(s) 715, 821
BssNI GRCGYC 3 cut(s) 5, 233, 447
BssSI CACGAG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 82
Bst2UI CCWGG 3 cut(s) 125, 323, 365
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 3 cut(s) 5, 233, 447
BstC8I GCNNGC 1 cut(s) 614
BstDEI CTNAG 5 cut(s) 163, 273, 507, 702, 720
BstF5I GGATG 3 cut(s) 280, 354, 655
BstH2I RGCGCY 2 cut(s) 236, 450
BstHHI GCGC 2 cut(s) 235, 449
BstKTI GATC 2 cut(s) 718, 824
BstMBI GATC 2 cut(s) 715, 821
BstMCI CGRYCG 1 cut(s) 341
BstNI CCWGG 3 cut(s) 125, 323, 365
BstSLI GKGCMC 2 cut(s) 210, 549
BstV1I GCAGC 9 cut(s) 49, 52, 55, 58, 61, 259, 514, 588, 691
BstX2I RGATCY 2 cut(s) 715, 821
BstYI RGATCY 2 cut(s) 715, 821
Bsu36I CCTNAGG 1 cut(s) 163
BsuRI GGCC 6 cut(s) 65, 128, 185, 208, 461, 735
BtsCI GGATG 3 cut(s) 280, 354, 655
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 1 cut(s) 810
Cac8I GCNNGC 1 cut(s) 614
CfoI GCGC 2 cut(s) 235, 449
Cfr13I GGNCC 6 cut(s) 127, 206, 207, 460, 517, 733
Cfr9I CCCGGG 1 cut(s) 662
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 61, 457
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 5 cut(s) 163, 273, 507, 702, 720
DinI GGCGCC 2 cut(s) 234, 448
DpnI GATC 2 cut(s) 717, 823
DpnII GATC 2 cut(s) 715, 821
DraI TTTAAA 1 cut(s) 76
DraIII CACNNNGTG 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 836
Eco24I GRGCYC 3 cut(s) 89, 210, 838
Eco47I GGWCC 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 836
Eco81I CCTNAGG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 836
EcoO109I RGGNCCY 2 cut(s) 127, 207
EcoRII CCWGG 3 cut(s) 123, 321, 363
EcoT38I GRGCYC 3 cut(s) 89, 210, 838
EgeI GGCGCC 2 cut(s) 234, 448
EheI GGCGCC 2 cut(s) 234, 448
FaeI CATG 2 cut(s) 64, 460
FaqI GGGAC 1 cut(s) 503
FatI CATG 2 cut(s) 60, 456
FauI CCCGC 2 cut(s) 366, 524
FokI GGATG 3 cut(s) 267, 341, 662
FriOI GRGCYC 3 cut(s) 89, 210, 838
FspBI CTAG 1 cut(s) 488
GlaI GCGC 2 cut(s) 234, 448
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 466
HaeII RGCGCY 2 cut(s) 236, 450
HaeIII GGCC 6 cut(s) 65, 128, 185, 208, 461, 735
HapII CCGG 8 cut(s) 12, 182, 372, 414, 444, 522, 578, 663
HhaI GCGC 2 cut(s) 235, 449
Hin1I GRCGYC 3 cut(s) 5, 233, 447
Hin1II CATG 2 cut(s) 64, 460
Hin6I GCGC 2 cut(s) 233, 447
HinP1I GCGC 2 cut(s) 233, 447
HinfI GANTC 2 cut(s) 453, 565
HpaII CCGG 8 cut(s) 12, 182, 372, 414, 444, 522, 578, 663
HphI GGTGA 2 cut(s) 233, 760
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 2 cut(s) 156, 715
Hpy188III TCNNGA 2 cut(s) 314, 488
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 3 cut(s) 64, 486, 601
HpyCH4V TGCA 1 cut(s) 815
HpyF3I CTNAG 5 cut(s) 163, 273, 507, 702, 720
Hsp92I GRCGYC 3 cut(s) 5, 233, 447
Hsp92II CATG 2 cut(s) 64, 460
HspAI GCGC 2 cut(s) 233, 447
KasI GGCGCC 2 cut(s) 232, 446
Kzo9I GATC 2 cut(s) 715, 821
LmnI GCTCC 2 cut(s) 373, 478
Lsp1109I GCAGC 9 cut(s) 49, 52, 55, 58, 61, 259, 514, 588, 691
MabI ACCWGGT 1 cut(s) 321
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 688
MalI GATC 2 cut(s) 717, 823
MboI GATC 2 cut(s) 715, 821
MboII GAAGA 1 cut(s) 545
MflI RGATCY 2 cut(s) 715, 821
MhlI GDGCHC 5 cut(s) 89, 210, 475, 549, 838
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 251, 300, 376, 439, 741
MluNI TGGCCA 1 cut(s) 65
Mly113I GGCGCC 2 cut(s) 233, 447
MmeI TCCRAC 1 cut(s) 432
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 3 cut(s) 337, 682, 724
MspI CCGG 8 cut(s) 12, 182, 372, 414, 444, 522, 578, 663
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 3 cut(s) 125, 323, 365
NarI GGCGCC 2 cut(s) 233, 447
NciI CCSGG 7 cut(s) 12, 372, 414, 522, 578, 663, 664
NdeII GATC 2 cut(s) 715, 821
NlaIII CATG 2 cut(s) 64, 460
NlaIV GGNNCC 8 cut(s) 129, 208, 234, 369, 448, 519, 546, 717
NmeAIII GCCGAG 1 cut(s) 615
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 453, 565
PluTI GGCGCC 2 cut(s) 236, 450
Psp124BI GAGCTC 1 cut(s) 838
Psp6I CCWGG 3 cut(s) 123, 321, 363
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 123, 321, 363
PspN4I GGNNCC 8 cut(s) 129, 208, 234, 369, 448, 519, 546, 717
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 6 cut(s) 127, 206, 207, 460, 517, 733
PsuI RGATCY 2 cut(s) 715, 821
PvuII CAGCTG 2 cut(s) 682, 724
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 838
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 2 cut(s) 715, 821
Sau96I GGNCC 6 cut(s) 127, 206, 207, 460, 517, 733
SduI GDGCHC 5 cut(s) 89, 210, 475, 549, 838
SetI ASST 6 cut(s) 327, 603, 659, 684, 726, 838
SexAI ACCWGGT 1 cut(s) 321
SfoI GGCGCC 2 cut(s) 234, 448
SinI GGWCC 1 cut(s) 517
SmaI CCCGGG 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 5 cut(s) 251, 300, 376, 439, 741
SspDI GGCGCC 2 cut(s) 232, 446
SspI AATATT 1 cut(s) 790
SspMI CTAG 1 cut(s) 488
SstI GAGCTC 1 cut(s) 838
TaqI TCGA 4 cut(s) 57, 539, 583, 832
TaqII GACCGA 1 cut(s) 505
TasI AATT 5 cut(s) 251, 300, 376, 439, 741
TauI GCSGC 9 cut(s) 31, 34, 37, 392, 401, 499, 502, 679, 738
TfiI GAWTC 2 cut(s) 453, 565
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 817
TseI GCWGC 9 cut(s) 37, 40, 43, 46, 49, 247, 502, 601, 679
TspMI CCCGGG 1 cut(s) 662
TspRI CASTG 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 300
XbaI TCTAGA 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 2 cut(s) 361, 556
XmaI CCCGGG 1 cut(s) 662
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.