Rorug03G0322400

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000324
Physical Location & Seq
Forward (+)
35107110 .. 35107739
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0322400.1

Sequence Viewer

Length: 630 bp
ATGGAACCACAAACCCAGGAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGAGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTAGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCAGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

209

Amino Acids

23.29

Weight (kDa)

8.39

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 2.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AciI CCGC 3 cut(s) 82, 265, 625
AclWI GGATC 3 cut(s) 188, 363, 460
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 220, 473
AjnI CCWGG 1 cut(s) 15
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 6 cut(s) 130, 193, 316, 404, 580, 605
AluI AGCT 6 cut(s) 130, 193, 316, 404, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 188, 363, 460
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 512
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 256, 582
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 424, 530
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 17
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 2 cut(s) 51, 625
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 626
Bme1390I CCNGG 2 cut(s) 17, 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 5 cut(s) 6, 21, 155, 337, 623
BmrFI CCNGG 2 cut(s) 17, 55
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 107, 596
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 15, 27
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 116
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 15, 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 342, 595
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 582
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 3 cut(s) 82, 265, 625
BspCNI CTCAG 2 cut(s) 343, 594
BspLI GGNNCC 5 cut(s) 6, 21, 155, 337, 623
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 3 cut(s) 188, 363, 460
BspT107I GGYRCC 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 15, 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 351, 370, 581
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 358, 455
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
BstMWI GCNNNNNNNGC 3 cut(s) 79, 401, 591
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 15, 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 2 cut(s) 180, 452
BstYI RGATCY 2 cut(s) 180, 452
Bsu36I CCTNAGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 7 cut(s) 70, 293, 301, 463, 493, 497, 520
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 3 cut(s) 351, 370, 581
DpnI GATC 6 cut(s) 108, 182, 212, 310, 357, 454
DpnII GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 256, 582
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 2 cut(s) 256, 582
FaeI CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 462, 492, 496, 519
Fnu4HI GCNGC 2 cut(s) 51, 625
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 582
Fsp4HI GCNGC 2 cut(s) 51, 625
GluI GCNGC 2 cut(s) 51, 625
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
HinfI GANTC 4 cut(s) 94, 117, 172, 374
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 335, 512
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 5 cut(s) 111, 177, 286, 313, 535
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 619
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 401, 591
HpyF3I CTNAG 3 cut(s) 351, 370, 581
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 355, 452
LmnI GCTCC 3 cut(s) 84, 127, 621
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 515, 548
MalI GATC 6 cut(s) 108, 182, 212, 310, 357, 454
MboI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
MboII GAAGA 5 cut(s) 280, 283, 369, 390, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 180, 452
MhlI GDGCHC 3 cut(s) 256, 300, 582
MluCI AATT 1 cut(s) 340
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 2 cut(s) 366, 420
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 3 cut(s) 193, 404, 627
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 17, 55
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 79, 401, 591
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 355, 452
NlaIII CATG 7 cut(s) 73, 296, 304, 466, 496, 500, 523
NlaIV GGNNCC 5 cut(s) 6, 21, 155, 337, 623
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 555
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 94, 117, 172, 374
PkrI GCNGC 2 cut(s) 52, 626
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 5 cut(s) 6, 21, 155, 337, 623
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 452
PvuII CAGCTG 2 cut(s) 193, 404
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 366, 420
SatI GCNGC 2 cut(s) 51, 625
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 355, 452
Sau96I GGNCC 2 cut(s) 153, 276
ScrFI CCNGG 2 cut(s) 17, 55
SduI GDGCHC 3 cut(s) 256, 300, 582
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 122, 575
SmoI CTYRAG 2 cut(s) 122, 575
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 82, 265, 625
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 15, 53
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 4 cut(s) 94, 117, 172, 374
Tru1I TTAA 2 cut(s) 366, 420
Tru9I TTAA 2 cut(s) 366, 420
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 281, 473, 536
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.