RchiOBHm_Chr4g0386481

Enhancer of mRNA-decapping protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000324
Physical Location & Seq
Reverse (-)
1983609 .. 1986735
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35984

Sequence Viewer

Length: 612 bp
ATGTTCACCTTTTGGCTAGGTCCAGATGAAGATGGTACGCCACTAATCACAGGAAGGATTGTTATGGCCATTCAAATAGTTGGTGAGGGGGAAGCTGTTCATCAACGAGTTTGTTGGCATTGTCATAAACAAGATGTTTTGGTTGTTCGGGTTGGGAAGCGTGTTCTACAAATTGATACTACTAAAGTTGCAAAGGGTGAAGTCCCTTCTGCTGAGGATCCTATTAAGTGTCCTGTTGAAAAGCTTAGTGATGGGGTCCAATTTGTTGGTAAACATGATGGAGAGGTGACAGATTTATCAATGTGCCAATGGATGACCACCTGGCTGGTTTCTGCTTCTATGGATGGAACTAAAAAGATCTGGGAAGATCGCAAGTCACAACCACGTTTAGTATTGAGACCCTATGATGGCCCTCCTGTTCATTCGCCTACATTTGTGACAGCTCCAAAGAGGCCTGATCACATCACACATATAGAAGTGGGCCCACCTAATCGGGAAGTGAAGATCTGGTCCTCAGAGAGTGAAGAAGGCTGGCTGCTTCCCAGTGATGCTGAGTCGTGGAAATGTACTCAGACCTTAAGAGTTAAAGAGCTCTGCTCAACCTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Ge1_WD40

Protein Analysis

203

Amino Acids

22.78

Weight (kDa)

5.98

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 212, 225
AcoI YGGCCR 1 cut(s) 66
AfaI GTAC 2 cut(s) 37, 568
AfiI CCNNNNNNNGG 1 cut(s) 407
AflII CTTAAG 1 cut(s) 577
AgsI TTSAA 2 cut(s) 74, 239
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 4 cut(s) 95, 244, 443, 592
AluI AGCT 4 cut(s) 95, 244, 443, 592
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 2 cut(s) 212, 225
Ama87I CYCGRG 1 cut(s) 604
AoxI GGCC 4 cut(s) 66, 409, 452, 481
ApaI GGGCCC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 535
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 6 cut(s) 20, 256, 410, 481, 482, 510
AsuHPI GGTGA 3 cut(s) 95, 209, 298
AvaI CYCGRG 1 cut(s) 604
AvaII GGWCC 3 cut(s) 20, 256, 510
BaeGI GKGCMC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 68
BamHI GGATCC 1 cut(s) 217
BanII GRGCYC 2 cut(s) 485, 594
Bbv12I GWGCWC 1 cut(s) 594
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 522
BccI CCATC 5 cut(s) 26, 245, 272, 338, 401
BciT130I CCWGG 1 cut(s) 322
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 17
BfrI CTTAAG 1 cut(s) 577
BglII AGATCT 2 cut(s) 357, 504
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 3 cut(s) 20, 256, 510
BmeT110I CYCGRG 1 cut(s) 604
BmgT120I GGNCC 6 cut(s) 20, 256, 410, 481, 482, 510
BmiI GGNNCC 3 cut(s) 219, 257, 483
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 537
BplI GAGNNNNNCTC 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 322
BseGI GGATG 2 cut(s) 318, 349
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 4 cut(s) 204, 528, 543, 584
BseNI ACTGG 1 cut(s) 543
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 1 cut(s) 522
BshFI GGCC 4 cut(s) 68, 411, 454, 483
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 604
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 4 cut(s) 68, 411, 454, 483
Bso31I GGTCTC 1 cut(s) 391
BsoBI CYCGRG 1 cut(s) 604
Bsp120I GGGCCC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 485, 594
Bsp143I GATC 5 cut(s) 217, 357, 367, 457, 504
BspANI GGCC 4 cut(s) 68, 411, 454, 483
BspCNI CTCAG 4 cut(s) 205, 527, 544, 583
BspLI GGNNCC 3 cut(s) 219, 257, 483
BspPI GGATC 2 cut(s) 212, 225
BspTI CTTAAG 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 391
BsrI ACTGG 1 cut(s) 543
BssMI GATC 5 cut(s) 217, 357, 367, 457, 504
Bst2UI CCWGG 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 5 cut(s) 213, 245, 514, 552, 570
BstF5I GGATG 2 cut(s) 318, 349
BstKTI GATC 5 cut(s) 220, 360, 370, 460, 507
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 5 cut(s) 217, 357, 367, 457, 504
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 522
BstX2I RGATCY 3 cut(s) 217, 357, 504
BstXI CCANNNNNNTGG 2 cut(s) 266, 325
BstYI RGATCY 3 cut(s) 217, 357, 504
BsuRI GGCC 4 cut(s) 68, 411, 454, 483
BtsCI GGATG 2 cut(s) 318, 349
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 1 cut(s) 533
Cfr13I GGNCC 6 cut(s) 20, 256, 410, 481, 482, 510
Csp6I GTAC 2 cut(s) 36, 567
CviAII CATG 1 cut(s) 275
CviQI GTAC 2 cut(s) 36, 567
DdeI CTNAG 5 cut(s) 213, 245, 514, 552, 570
DpnI GATC 5 cut(s) 219, 359, 369, 459, 506
DpnII GATC 5 cut(s) 217, 357, 367, 457, 504
EaeI YGGCCR 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 592
Eco147I AGGCCT 1 cut(s) 454
Eco24I GRGCYC 2 cut(s) 485, 594
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 20, 256, 510
Eco53kI GAGCTC 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 320
EcoT38I GRGCYC 2 cut(s) 485, 594
FaeI CATG 1 cut(s) 278
FaiI YATR 7 cut(s) 65, 126, 276, 341, 405, 471, 473
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 2 cut(s) 325, 356
FriOI GRGCYC 2 cut(s) 485, 594
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 1 cut(s) 17
GluI GCNGC 1 cut(s) 536
HaeIII GGCC 4 cut(s) 68, 411, 454, 483
Hin1II CATG 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 1 cut(s) 554
HphI GGTGA 3 cut(s) 95, 209, 298
Hpy166II GTNNAC 2 cut(s) 6, 272
Hpy188I TCNGA 2 cut(s) 517, 573
Hpy188III TCNNGA 2 cut(s) 23, 494
Hpy8I GTNNAC 2 cut(s) 6, 272
HpyAV CCTTC 3 cut(s) 48, 216, 521
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 1 cut(s) 191
HpyF3I CTNAG 5 cut(s) 213, 245, 514, 552, 570
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 5 cut(s) 217, 357, 367, 457, 504
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 1 cut(s) 522
LweI GCATC 1 cut(s) 538
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 3 cut(s) 286, 375, 436
MalI GATC 5 cut(s) 219, 359, 369, 459, 506
MboI GATC 5 cut(s) 217, 357, 367, 457, 504
MboII GAAGA 4 cut(s) 41, 377, 514, 536
MflI RGATCY 3 cut(s) 217, 357, 504
MhlI GDGCHC 2 cut(s) 485, 594
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 2 cut(s) 171, 260
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 563
MnlI CCTC 6 cut(s) 79, 208, 277, 423, 444, 523
Mox20I TGGCCA 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 96
MscI TGGCCA 1 cut(s) 68
MseI TTAA 3 cut(s) 225, 578, 585
Msp20I TGGCCA 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 577
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
NdeII GATC 5 cut(s) 217, 357, 367, 457, 504
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 219, 257, 483
NmuCI GTSAC 3 cut(s) 286, 375, 436
PaeR7I CTCGAG 1 cut(s) 604
PceI AGGCCT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 219, 257, 483
PspOMI GGGCCC 1 cut(s) 481
PspPI GGNCC 6 cut(s) 20, 256, 410, 481, 482, 510
PspXI VCTCGAGB 1 cut(s) 604
PsuI RGATCY 3 cut(s) 217, 357, 504
RsaI GTAC 2 cut(s) 37, 568
RsaNI GTAC 2 cut(s) 36, 567
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 3 cut(s) 225, 578, 585
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 5 cut(s) 217, 357, 367, 457, 504
Sau96I GGNCC 6 cut(s) 20, 256, 410, 481, 482, 510
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 2 cut(s) 485, 594
SfaNI GCATC 1 cut(s) 538
Sfr274I CTCGAG 1 cut(s) 604
SinI GGWCC 3 cut(s) 20, 256, 510
SlaI CTCGAG 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 577, 604
SmoI CTYRAG 2 cut(s) 577, 604
Sse9I AATT 2 cut(s) 171, 260
SseBI AGGCCT 1 cut(s) 454
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 594
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 320
TaiI ACGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 605
TasI AATT 2 cut(s) 171, 260
TatI WGTACW 1 cut(s) 566
Tru1I TTAA 3 cut(s) 225, 578, 585
Tru9I TTAA 3 cut(s) 225, 578, 585
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 3 cut(s) 286, 375, 436
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 3 cut(s) 286, 375, 436
TspDTI ATGAA 3 cut(s) 42, 89, 410
TspRI CASTG 1 cut(s) 550
Vha464I CTTAAG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 20, 256, 510
XhoI CTCGAG 1 cut(s) 604
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.