MD00G1013700.v1.1

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
1720217 .. 1723200
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1013700.v1.1.491

Sequence Viewer

Length: 141 bp
ATGGAAGCTATTAATTCTGCATCATCGGTGACTCAAACCTTAAGCAGCGAAGTGGCTGACGGTCAACATAAGCTCCTAGCTCTTGCAGCTGCACGAGGAAAACTCAAGTGCAGTAAATCCTCTGGTCACACAACTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

47

Amino Acids

4.72

Weight (kDa)

9.1

Isoelectric Point (pI)

15.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 40
AluBI AGCT 4 cut(s) 8, 73, 80, 89
AluI AGCT 4 cut(s) 8, 73, 80, 89
ApeKI GCWGC 3 cut(s) 45, 86, 89
AseI ATTAAT 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 40
BauI CACGAG 1 cut(s) 93
BbvI GCAGC 3 cut(s) 57, 76, 98
BfaI CTAG 1 cut(s) 77
BfrI CTTAAG 1 cut(s) 40
BisI GCNGC 3 cut(s) 46, 87, 90
BlsI GCNGC 3 cut(s) 47, 88, 91
BmsI GCATC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpuEI CTTGAG 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
BseXI GCAGC 3 cut(s) 57, 76, 98
BsgI GTGCAG 2 cut(s) 75, 130
BspTI CTTAAG 1 cut(s) 40
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV1I GCAGC 3 cut(s) 57, 76, 98
CviJI RGCY 5 cut(s) 8, 56, 73, 80, 89
CviKI_1 RGCY 5 cut(s) 8, 56, 73, 80, 89
FaiI YATR 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 46, 87, 90
Fsp4HI GCNGC 3 cut(s) 46, 87, 90
FspBI CTAG 1 cut(s) 77
FspEI CC 8 cut(s) 11, 38, 45, 52, 81, 89, 108, 133
GluI GCNGC 3 cut(s) 46, 87, 90
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 20, 86, 92, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 3 cut(s) 57, 76, 98
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 28, 125
MluCI AATT 1 cut(s) 13
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 89, 130
MseI TTAA 2 cut(s) 12, 41
MspA1I CMGCKG 1 cut(s) 89
MspCI CTTAAG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 28, 125
PkrI GCNGC 3 cut(s) 47, 88, 91
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 89
SaqAI TTAA 2 cut(s) 12, 41
SatI GCNGC 3 cut(s) 46, 87, 90
SchI GAGTC 1 cut(s) 25
SetI ASST 5 cut(s) 10, 41, 75, 82, 91
SfaNI GCATC 1 cut(s) 29
SgeI CNNG 6 cut(s) 89, 95, 105, 107, 118, 135
SmlI CTYRAG 2 cut(s) 40, 104
SmoI CTYRAG 2 cut(s) 40, 104
Sse9I AATT 1 cut(s) 13
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 62
TasI AATT 1 cut(s) 13
Tru1I TTAA 2 cut(s) 12, 41
Tru9I TTAA 2 cut(s) 12, 41
TseFI GTSAC 2 cut(s) 28, 125
TseI GCWGC 3 cut(s) 45, 86, 89
Tsp45I GTSAC 2 cut(s) 28, 125
Vha464I CTTAAG 1 cut(s) 40
VspI ATTAAT 1 cut(s) 12
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.