RLG00000009985

Enhancer of mRNA-decapping protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61523086 .. 61523865
780 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009985

Sequence Viewer

Length: 456 bp
ATGGGTGTTTGGTTGCCTGGGGAGTTTCAGCCGCAGTTAGAAGTGACCCCCATAACCAAGTATGATTCGGATCCTCAGCTGGTGTTGGGCCGCCAAATTACGGTGAATAAGTCATATGTATGCTATGGATTGAAGCCGGGGAATATTCGGCAGGTTTTGGTTGTTCGGGTTGGGAAGCGTGTTCTACAAATTGATACTACTAAAGTTGCAAAGGGTAAAGTCCCTTCTGCTGAGGATCCTATTAAGTTTCCTGTTGAAAAGCTTATTGATGGGGTCCAATTTGTTGGTAAACATGACGGAGAGGTGACAGATTTTATCAATGTGCCAATGGATGACCACCTGGCTGGTTTCTGCTTCTATGGATGGAACTGTAGTGGAATAAGTAGTGAAACTTGTGCATTTTCATCAGGGTTGGTGGGAACACTGGCTCCAGCTTGCCCTTCTACATCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.37

Weight (kDa)

6.08

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13290 AT3G13300 AT3G13300 AT3G13300
fragaria_vesca FvH4_3g41972 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g41980 FvH4_3g42780 FvH4_3g42790 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_3g42820 FvH4_4g01881 FvH4_7g10420
malus_domestica MD00G1013700.v1.1 MD03G1039800.v1.1 MD11G1041300.v1.1 MD11G1094900.v1.1
prunus_persica Prupe.6G032100_v2.0.a1
pyrus_communis pycom03g03070 pycom11g03500 pycom11g08470 pycom12g06730
rosa_chinensis RchiOBHm_Chr1g0328831 RchiOBHm_Chr4g0386471 RchiOBHm_Chr4g0386481 RchiOBHm_Chr4g0386551 RchiOBHm_Chr4g0386701 RchiOBHm_Chr4g0386801 RchiOBHm_Chr4g0386811 RchiOBHm_Chr4g0386821 RchiOBHm_Chr4g0386921 RchiOBHm_Chr4g0386931 RchiOBHm_Chr4g0386941 RchiOBHm_Chr4g0387211 RchiOBHm_Chr4g0389101 RchiOBHm_Chr4g0389111 RchiOBHm_Chr4g0389201 RchiOBHm_Chr4g0389211 RchiOBHm_Chr4g0389321 RchiOBHm_Chr4g0389331 RchiOBHm_Chr4g0389341 RchiOBHm_Chr4g0389411 RchiOBHm_Chr5g0075171
rosa_laevigata RLG00000009985 RLG00000009990 RLG00000009996 RLG00000009998 RLG00000010136 RLG00000010140 RLG00000036537
rosa_multiflora Rmu_co8461959.1_g000001 Rmu_sc0000013.1_g000017 Rmu_sc0000013.1_g000024 Rmu_sc0001015.1_g000001 Rmu_sc0001395.1_g000004 Rmu_sc0001942.1_g000022 Rmu_sc0002498.1_g000018 Rmu_sc0002498.1_g000020 Rmu_sc0002557.1_g000005 Rmu_sc0002604.1_g000010 Rmu_sc0002604.1_g000011 Rmu_sc0004750.1_g000003 Rmu_sc0006571.1_g000001 Rmu_sc0006571.1_g000014 Rmu_sc0006571.1_g000018 Rmu_sc0008050.1_g000016 Rmu_sc0008066.1_g000009 Rmu_sc0008380.1_g000006 Rmu_sc0008380.1_g000010 Rmu_sc0008380.1_g000012 Rmu_sc0010272.1_g000021 Rmu_sc0010693.1_g000010 Rmu_sc0010693.1_g000012 Rmu_sc0010693.1_g000014 Rmu_sc0010693.1_g000015 Rmu_sc0031790.1_g000003 Rmu_sc0040539.1_g000001 Rmu_ssc0000211.1_g000001 Rmu_ssc0000211.1_g000011 Rmu_ssc0000211.1_g000013
rosa_roxburghii Rroxscaffold_1G00006420 Rroxscaffold_1G00006430 Rroxscaffold_5G00334020 Rroxscaffold_5G00334050 Rroxscaffold_5G00335420
rosa_rugosa Rorug03G0307600 Rorug03G0308600 Rorug03G0322400 Rorug05G0437200 Rorug05G0437200 Rorug05G0437200
rosa_samantha Rh1BG075700 Rh4BG010000 Rh4BG010100 Rh4BG010200 Rh4BG020000 Rh4BG020400 Rh4BG172100 Rh4CG015300 Rh4CG016300 Rh5AG494100 Rh5AG494200 Rh5BG515500 Rh5CG539300 Rh5DG528200
rosa_wichuraiana Rw4G000930 Rw4G001980 Rw4G001990 Rw4G011950 Rw5G045850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 2 cut(s) 32, 91
AclWI GGATC 4 cut(s) 65, 78, 230, 243
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 133, 257
AjnI CCWGG 2 cut(s) 16, 339
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
AluBI AGCT 3 cut(s) 79, 262, 434
AluI AGCT 3 cut(s) 79, 262, 434
AlwI GGATC 4 cut(s) 65, 78, 230, 243
AoxI GGCC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 88, 274
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 115, 316
AvaII GGWCC 1 cut(s) 274
BamHI GGATCC 2 cut(s) 70, 235
BarI GAAGNNNNNNTAC 2 cut(s) 208, 240
BbvCI CCTCAGC 2 cut(s) 75, 231
BccI CCATC 2 cut(s) 263, 357
BciT130I CCWGG 2 cut(s) 18, 341
BcnI CCSGG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 370
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 32, 91
BlsI GCNGC 2 cut(s) 33, 92
Bme1390I CCNGG 3 cut(s) 18, 138, 341
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 88, 274
BmiI GGNNCC 4 cut(s) 72, 237, 275, 429
BmrFI CCNGG 3 cut(s) 18, 138, 341
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 2 cut(s) 75, 231
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 17, 137
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 2 cut(s) 18, 341
BseDI CCNNGG 2 cut(s) 17, 137
BseGI GGATG 2 cut(s) 337, 368
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 89, 222
BseNI ACTGG 1 cut(s) 429
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 70, 235
BspACI CCGC 2 cut(s) 32, 91
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 88, 223
BspLI GGNNCC 4 cut(s) 72, 237, 275, 429
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 4 cut(s) 65, 78, 230, 243
BsrI ACTGG 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 17, 137
BssMI GATC 2 cut(s) 70, 235
Bst2UI CCWGG 2 cut(s) 18, 341
Bst4CI ACNGT 2 cut(s) 103, 371
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 75, 231
BstF5I GGATG 2 cut(s) 337, 368
BstKTI GATC 2 cut(s) 73, 238
BstMBI GATC 2 cut(s) 70, 235
BstNI CCWGG 2 cut(s) 18, 341
BstSCI CCNGG 3 cut(s) 16, 136, 339
BstSFI CTRYAG 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 70, 235
BstXI CCANNNNNNTGG 2 cut(s) 284, 344
BstYI RGATCY 2 cut(s) 70, 235
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 337, 368
BtsIMutI CAGTG 1 cut(s) 422
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 88, 274
CviAII CATG 1 cut(s) 293
CviJI RGCY 8 cut(s) 31, 79, 90, 136, 262, 344, 428, 434
CviKI_1 RGCY 8 cut(s) 31, 79, 90, 136, 262, 344, 428, 434
DdeI CTNAG 2 cut(s) 75, 231
DpnI GATC 2 cut(s) 72, 237
DpnII GATC 2 cut(s) 70, 235
Eco47I GGWCC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 16, 339
FaeI CATG 1 cut(s) 296
FaiI YATR 9 cut(s) 53, 63, 115, 117, 121, 126, 294, 360, 454
FaqI GGGAC 1 cut(s) 206
FatI CATG 1 cut(s) 292
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 32, 91
FokI GGATG 2 cut(s) 344, 375
Fsp4HI GCNGC 2 cut(s) 32, 91
GluI GCNGC 2 cut(s) 32, 91
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 115, 316
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 234, 450
HpyCH4III ACNGT 2 cut(s) 103, 371
HpyCH4V TGCA 2 cut(s) 209, 398
HpyF3I CTNAG 2 cut(s) 75, 231
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 2 cut(s) 70, 235
LmnI GCTCC 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 43, 304
MalI GATC 2 cut(s) 72, 237
MboI GATC 2 cut(s) 70, 235
MflI RGATCY 2 cut(s) 70, 235
MluCI AATT 3 cut(s) 96, 189, 278
MnlI CCTC 3 cut(s) 84, 226, 295
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 118
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 3 cut(s) 18, 138, 341
MvaI CCWGG 2 cut(s) 18, 341
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 70, 235
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 4 cut(s) 72, 237, 275, 429
NmuCI GTSAC 2 cut(s) 43, 304
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 33, 92
Psp6I CCWGG 2 cut(s) 16, 339
PspGI CCWGG 2 cut(s) 16, 339
PspN4I GGNNCC 4 cut(s) 72, 237, 275, 429
PspPI GGNCC 2 cut(s) 88, 274
PsuI RGATCY 2 cut(s) 70, 235
PvuII CAGCTG 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 2 cut(s) 32, 91
Sau3AI GATC 2 cut(s) 70, 235
Sau96I GGNCC 2 cut(s) 88, 274
ScrFI CCNGG 3 cut(s) 18, 138, 341
SetI ASST 6 cut(s) 81, 156, 264, 306, 342, 436
SfcI CTRYAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 3 cut(s) 96, 189, 278
SsiI CCGC 2 cut(s) 32, 91
SspI AATATT 1 cut(s) 145
StyD4I CCNGG 3 cut(s) 16, 136, 339
TaaI ACNGT 2 cut(s) 103, 371
TasI AATT 3 cut(s) 96, 189, 278
TauI GCSGC 2 cut(s) 34, 93
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 2 cut(s) 43, 304
Tsp45I GTSAC 2 cut(s) 43, 304
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.