AT5G48410

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19620267 .. 19623425
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48410.3

Sequence Viewer

Length: 2583 bp
ATGGAGAGATTTTGTATTCAAACCCAAACTTTGCTATCGTTTCTTCTTGTTTTGCTTCTCTTCATCTCCAGGTCTTTTGCTTCTACTAAAAACGACGACGTTGATGGAGGTAAACGGGTTCAGATCCGGGTCGGGTTGGTTTTGGATTTGGGTTCCTTGAAAGGGAAGATAGTGAAAAACTCTGTTTCCATGGCTCTTTCCTATTTCTACGCTATTCATAATGATTACAAAACAAGAGTCTCTGTTTCACTCAGAAACTCTCATGGAGAGCCTCTTCTTGCTCTTGCTTCTGCTGTAGATCTTCTGAAAACTGAAGGAGTAGAAGCGATTATTGGCGGGAACTCGTTGTTAGAAGCGAAGCTTTTAGGGGAACTTGGAGAGAAAGCTAGGGTTCCTATGATTTCACTTGACTCTCCGTTTTCATTGTCATTAAGCAAATACACTCACTTGATCCAAGCCACACATGATTCTACCTCTGAGGCAAAGGGGATTACATCTTTTATTAATGTGTTTGATTGGAACAGTGTTGCTCTTGTTTATGAAGATCATGATGACTGGAGAGAGAGTATGCAACTTTTGGTGGAGCATTTTCATGAGAACGGTGTTCGTGTACAGTCCAAGGTTGGTTTTACTGTCTCTTCTAGTGAGGATTTTGTGATGGGTCGGTTACAGCAGCTGAAGGACTTGGGGACTACTGTCTTTGTTGTTCACTTGTCTGAAGTTATTGCAACTCATTTATTCCCATGTGCTCGGAGATTAGGGTTGATGGGTGATGGGTTTGTTTGGATCCTGACTGCTAAAACTATGAACAGCTTCCATGAGAACATTGATGATTTCACAAAGCAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTACATTCCAATGTCTATAGAGCTTCAAAATTTCACTTTGAGATGGAGAAAATCATTGCCTGTTGAAGAAGCGGAGCTAACTCGGTTGAGTATCTCTGGCATATGGGCTCACGATATCGCTTTTGCTCTGGCGAGAGCAGCAGAAGTTATAAGGATGCCAAATGTGACATCAACTCTCCTTGAGGAAATCACAAAGACTAGGTTTAACGGTTTGAGTGGTGATTTCCAACTAAATGATAAGAAGTTGTTATCAAACAAGTTTGAGATTATCAATATGATAGGATCAAGTGAGAGAAGAGTAGGATTCTTGAACTCTAACGGTAGTTTTAGTAATAGAAGACATTTATCTTCTACTCATAACAAGCTTGAGACCATAATCTGGCCAGGTGGGTCTGCTCAAAGTCCGAAAGGGACTAGTCTAATAGATAGCGATAGAAAAAAGCTGAGGGTCTTGGTTACATCTAGCAATAGATTCCCAAGACTGATGAAAGTGGAGACTGATCCAGTAACAAATGAATTAATTGTTGAAGGGTTCTGTATAGAAGTCTTTCGCGCTTCGATTAGTCCTTTCAACTATGAAGTTGAGTATATACCTTGGCTCAATGGAAGTAACTACGACAATCTTGCATATGCACTTCATAGCCAGAAAGACAAATATGATGCGGCCGTGGGAGATATTACAATCACTTCGAATAGATCGACGTATGTTGACTTTACGTTGCCATTCACTGAAATGGGTCTTGGAATTGTAGCAGTAAAAGAGAGAAGTATGTGGGTGTTCTTCCAACCTTTAACACCAGATCTTTGGATAACAAGTGCATTTTTTTTTGTCTTGACCGGAGTTATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGAGTTCCAAGGATCTTGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCTTGTCTATGCTCATAGGGAAAAGCTAAAACACAACTTATCAAGATTTGTTGTTACAGTTTGGGTATTTGCAGTGCTCATACTGACTGCAAGTTACACTGCAACATTGACATCAATGATGACGGTACAACAGATACGATTTAACTCCAACGAAGACTACGTGGGTCACCTTTCCGGCTCCCTCATTGCAAATGTGGCTCTCACTAGTTCCAGCCTCCGAGCAATGAGATCATTGGGTCTTAATAGTGCTGCAGATTATGCTCAAGCCTTGTTGAACAAGACTGTTTCATTTGTTGTTGATGAGTTGCCATACCTCAAAGTTGTCCTTGGCGAGAATCCAACACATTTTTTCATGGTCAAGACACAATCTACCACCAACGGTTTCGGCTTTATGTTTCAAAAGGGCTTCGAGTTGGTGCCTAATGTGTCCCGAGAAATCTCAAAGCTAAGGACGAGCGAGAAGCTAAATGAGATGGAGAAAAGATGGTTTGATAATCAACTTCCATACACAACCGATGATACATCAAATCCTATTACTCTTTACAGATTCCGCGGTTTGTTTATAATCATCGGTGTTTCATTCGCTTTCGCTCTTGCGGTACTTGTCATTCTCTGTCTCCGCGACAAATGGGAAATTCTTGTGGACAATCTAGACCTCTCACAACGACTTAGACATTTCAGGATCCACTTTGTAAGATCTATACATACTAGTCCCCTTGATGACCCCATTGGCGAAACTGCGGTTCAAATGGCTCAACAAAATAGACAATAG

Protein Analysis

860

Amino Acids

97.02

Weight (kDa)

6.89

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 41 - 369 1.2e-12 Periplasmic binding protein
ANF_receptor PF01094 58 - 387 1.1e-72 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 444 - 545 1.3e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 467 - 737 1.7e-09 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 549 - 766 1.7e-20 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1025, 2375
AccB1I GGYRCC 1 cut(s) 2227
AccB7I CCANNNNNTGG 1 cut(s) 1254
AccII CGCG 3 cut(s) 1428, 2364, 2433
AciI CCGC 8 cut(s) 336, 947, 1538, 2362, 2364, 2408, 2431, 2552
AclWI GGATC 9 cut(s) 118, 445, 781, 794, 1165, 1370, 1771, 2488, 2501
AcoI YGGCCR 3 cut(s) 1256, 1539, 1769
AcsI RAATTY 2 cut(s) 904, 2445
AcuI CTGAAG 3 cut(s) 333, 698, 738
AfaI GTAC 3 cut(s) 612, 1938, 2412
AfiI CCNNNNNNNGG 2 cut(s) 162, 1254
AhlI ACTAGT 3 cut(s) 1289, 2015, 2519
AjnI CCWGG 2 cut(s) 68, 1258
AjuI GAANNNNNNNTTGG 6 cut(s) 315, 347, 846, 878, 1599, 1631
Alw21I GWGCWC 2 cut(s) 751, 1890
Alw26I GTCTC 5 cut(s) 244, 640, 1238, 1364, 2432
AlwI GGATC 9 cut(s) 118, 445, 781, 794, 1165, 1370, 1771, 2488, 2501
AlwNI CAGNNNCTG 1 cut(s) 676
Ama87I CYCGRG 1 cut(s) 2241
AoxI GGCC 3 cut(s) 1256, 1539, 1769
ApeKI GCWGC 3 cut(s) 673, 1013, 2060
ApoI RAATTY 2 cut(s) 904, 2445
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AseI ATTAAT 2 cut(s) 504, 1394
Asp700I GAANNNNTTC 2 cut(s) 812, 1422
AspLEI GCGC 1 cut(s) 1430
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 782, 1106, 1970
AsuII TTCGAA 1 cut(s) 1565
AvaI CYCGRG 1 cut(s) 2241
BalI TGGCCA 2 cut(s) 1258, 1771
BamHI GGATCC 2 cut(s) 786, 2493
BanI GGYRCC 1 cut(s) 2227
BanII GRGCYC 1 cut(s) 985
BbsI GAAGAC 2 cut(s) 1219, 1971
Bbv12I GWGCWC 2 cut(s) 751, 1890
BbvCI CCTCAGC 1 cut(s) 1319
BbvI GCAGC 3 cut(s) 685, 1025, 2047
BccI CCATC 7 cut(s) 98, 652, 760, 767, 912, 2278, 2289
BceAI ACGGC 1 cut(s) 1526
BcgI CGANNNNNNTGC 2 cut(s) 1481, 1515
BciT130I CCWGG 2 cut(s) 70, 1260
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 5 cut(s) 244, 640, 1238, 1364, 2432
BcuI ACTAGT 3 cut(s) 1289, 2015, 2519
BfaI CTAG 8 cut(s) 387, 642, 1074, 1290, 1338, 2016, 2462, 2520
BfmI CTRYAG 3 cut(s) 294, 891, 2061
BglII AGATCT 3 cut(s) 298, 1675, 2507
BisI GCNGC 4 cut(s) 674, 1014, 1539, 2061
BlsI GCNGC 4 cut(s) 675, 1015, 1540, 2062
Bme1390I CCNGG 3 cut(s) 70, 128, 1260
BmeT110I CYCGRG 1 cut(s) 2241
BmiI GGNNCC 6 cut(s) 154, 393, 788, 1990, 2229, 2495
BmrFI CCNGG 3 cut(s) 70, 128, 1260
BmsI GCATC 2 cut(s) 1020, 1525
BoxI GACNNNNGTC 1 cut(s) 695
BpiI GAAGAC 2 cut(s) 1219, 1971
BpmI CTGGAG 2 cut(s) 52, 577
Bpu10I CCTNAGC 2 cut(s) 1319, 2258
Bpu14I TTCGAA 1 cut(s) 1565
BpuEI CTTGAG 3 cut(s) 1076, 1262, 2058
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 1972
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 7 cut(s) 189, 618, 1469, 1542, 1759, 2137, 2362
BsaWI WCCGGW 1 cut(s) 1712
BsaXI ACNNNNNCTCC 4 cut(s) 550, 580, 1707, 1737
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 1254
Bse1I ACTGG 2 cut(s) 560, 1379
Bse3DI GCAATG 4 cut(s) 855, 929, 1995, 2040
BseBI CCWGG 2 cut(s) 70, 1260
BseDI CCNNGG 7 cut(s) 189, 618, 1469, 1542, 1759, 2137, 2362
BseGI GGATG 1 cut(s) 1035
BseLI CCNNNNNNNGG 2 cut(s) 162, 1254
BseMI GCAATG 4 cut(s) 855, 929, 1995, 2040
BseMII CTCAG 4 cut(s) 265, 468, 1310, 1734
BseNI ACTGG 2 cut(s) 560, 1379
BseX3I CGGCCG 1 cut(s) 1539
BseXI GCAGC 3 cut(s) 685, 1025, 2047
Bsh1236I CGCG 3 cut(s) 1428, 2364, 2433
Bsh1285I CGRYCG 1 cut(s) 1542
BshFI GGCC 3 cut(s) 1258, 1541, 1771
BshNI GGYRCC 1 cut(s) 2227
BsiEI CGRYCG 1 cut(s) 1542
BsiHKAI GWGCWC 2 cut(s) 751, 1890
BsiHKCI CYCGRG 1 cut(s) 2241
BsiSI CCGG 3 cut(s) 127, 1713, 1986
BslFI GGGAC 4 cut(s) 703, 1300, 2224, 2508
BslI CCNNNNNNNGG 2 cut(s) 162, 1254
BsmAI GTCTC 5 cut(s) 244, 640, 1238, 1364, 2432
BsmFI GGGAC 4 cut(s) 703, 1300, 2224, 2508
BsnI GGCC 3 cut(s) 1258, 1541, 1771
Bso31I GGTCTC 1 cut(s) 1238
BsoBI CYCGRG 1 cut(s) 2241
Bsp119I TTCGAA 1 cut(s) 1565
Bsp1286I GDGCHC 3 cut(s) 751, 985, 1890
Bsp1407I TGTACA 1 cut(s) 610
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 8 cut(s) 336, 947, 1538, 2362, 2364, 2408, 2431, 2552
BspANI GGCC 3 cut(s) 1258, 1541, 1771
BspCNI CTCAG 4 cut(s) 264, 469, 1311, 1735
BspFNI CGCG 3 cut(s) 1428, 2364, 2433
BspHI TCATGA 2 cut(s) 547, 592
BspLI GGNNCC 6 cut(s) 154, 393, 788, 1990, 2229, 2495
BspMAI CTGCAG 1 cut(s) 2065
BspPI GGATC 9 cut(s) 118, 445, 781, 794, 1165, 1370, 1771, 2488, 2501
BspT104I TTCGAA 1 cut(s) 1565
BspT107I GGYRCC 1 cut(s) 2227
BspTNI GGTCTC 1 cut(s) 1238
BsrDI GCAATG 4 cut(s) 855, 929, 1995, 2040
BsrGI TGTACA 1 cut(s) 610
BsrI ACTGG 2 cut(s) 560, 1379
BssECI CCNNGG 7 cut(s) 189, 618, 1469, 1542, 1759, 2137, 2362
BssT1I CCWWGG 5 cut(s) 189, 618, 1469, 1759, 2137
Bst2UI CCWGG 2 cut(s) 70, 1260
Bst6I CTCTTC 4 cut(s) 65, 279, 643, 1165
BstAPI GCANNNNNTGC 1 cut(s) 2069
BstAUI TGTACA 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 1972
BstBI TTCGAA 1 cut(s) 1565
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 6 cut(s) 251, 477, 1319, 1743, 2258, 2480
BstDSI CCRYGG 3 cut(s) 189, 1542, 2362
BstEII GGTNACC 1 cut(s) 1976
BstF5I GGATG 1 cut(s) 1035
BstFNI CGCG 3 cut(s) 1428, 2364, 2433
BstHHI GCGC 1 cut(s) 1430
BstMAI GTCTC 5 cut(s) 244, 640, 1238, 1364, 2432
BstMCI CGRYCG 1 cut(s) 1542
BstMWI GCNNNNNNNGC 3 cut(s) 1013, 2006, 2069
BstNI CCWGG 2 cut(s) 70, 1260
BstPAI GACNNNNGTC 1 cut(s) 695
BstPI GGTNACC 1 cut(s) 1976
BstSCI CCNGG 3 cut(s) 68, 126, 1258
BstSFI CTRYAG 3 cut(s) 294, 891, 2061
BstUI CGCG 3 cut(s) 1428, 2364, 2433
BstV1I GCAGC 3 cut(s) 685, 1025, 2047
BstV2I GAAGAC 2 cut(s) 1219, 1971
BstX2I RGATCY 7 cut(s) 123, 298, 786, 1675, 1763, 2493, 2507
BstXI CCANNNNNNTGG 1 cut(s) 1680
BstYI RGATCY 7 cut(s) 123, 298, 786, 1675, 1763, 2493, 2507
BstZI CGGCCG 1 cut(s) 1539
BsuRI GGCC 3 cut(s) 1258, 1541, 1771
BtgI CCRYGG 3 cut(s) 189, 1542, 2362
BtsCI GGATG 1 cut(s) 1035
BtsI GCAGTG 2 cut(s) 1890, 1908
BtsIMutI CAGTG 4 cut(s) 529, 1602, 1890, 1908
Cac8I GCNNGC 1 cut(s) 846
CaiI CAGNNNCTG 1 cut(s) 676
CciI TCATGA 2 cut(s) 547, 592
CfoI GCGC 1 cut(s) 1430
Cfr42I CCGCGG 1 cut(s) 2365
Csp6I GTAC 3 cut(s) 611, 1937, 2411
CviAII CATG 8 cut(s) 190, 263, 464, 548, 593, 744, 818, 2164
CviQI GTAC 3 cut(s) 611, 1937, 2411
DdeI CTNAG 6 cut(s) 251, 477, 1319, 1743, 2258, 2480
EaeI YGGCCR 3 cut(s) 1256, 1539, 1769
EagI CGGCCG 1 cut(s) 1539
Eam1104I CTCTTC 4 cut(s) 65, 279, 643, 1165
EarI CTCTTC 4 cut(s) 65, 279, 643, 1165
EclXI CGGCCG 1 cut(s) 1539
Eco130I CCWWGG 5 cut(s) 189, 618, 1469, 1759, 2137
Eco24I GRGCYC 1 cut(s) 985
Eco31I GGTCTC 1 cut(s) 1238
Eco32I GATATC 1 cut(s) 991
Eco52I CGGCCG 1 cut(s) 1539
Eco57I CTGAAG 3 cut(s) 333, 698, 738
Eco88I CYCGRG 1 cut(s) 2241
Eco91I GGTNACC 1 cut(s) 1976
EcoO65I GGTNACC 1 cut(s) 1976
EcoRII CCWGG 2 cut(s) 68, 1258
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 5 cut(s) 189, 618, 1469, 1759, 2137
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 5 cut(s) 189, 618, 1469, 1759, 2137
FaeI CATG 8 cut(s) 193, 266, 467, 551, 596, 747, 821, 2167
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 2121, 2153
FaqI GGGAC 4 cut(s) 703, 1300, 2224, 2508
FatI CATG 8 cut(s) 189, 262, 463, 547, 592, 743, 817, 2163
FauI CCCGC 1 cut(s) 329
FauNDI CATATG 2 cut(s) 977, 1504
Fnu4HI GCNGC 4 cut(s) 674, 1014, 1539, 2061
FokI GGATG 1 cut(s) 1042
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 4 cut(s) 674, 1014, 1539, 2061
FspBI CTAG 8 cut(s) 387, 642, 1074, 1290, 1338, 2016, 2462, 2520
GlaI GCGC 1 cut(s) 1429
GluI GCNGC 4 cut(s) 674, 1014, 1539, 2061
GsuI CTGGAG 2 cut(s) 52, 577
HaeIII GGCC 3 cut(s) 1258, 1541, 1771
HapII CCGG 3 cut(s) 127, 1713, 1986
HhaI GCGC 1 cut(s) 1430
Hin1II CATG 8 cut(s) 193, 266, 467, 551, 596, 747, 821, 2167
Hin6I GCGC 1 cut(s) 1428
HinP1I GCGC 1 cut(s) 1428
HincII GTYRAC 1 cut(s) 1585
HindII GTYRAC 1 cut(s) 1585
HindIII AAGCTT 2 cut(s) 359, 1238
HinfI GANTC 7 cut(s) 237, 410, 467, 1179, 1347, 2146, 2358
HpaII CCGG 3 cut(s) 127, 1713, 1986
HphI GGTGA 3 cut(s) 782, 1106, 1970
Hpy166II GTNNAC 5 cut(s) 113, 611, 709, 1585, 2455
Hpy188I TCNGA 8 cut(s) 123, 254, 306, 478, 718, 753, 1281, 2030
Hpy8I GTNNAC 5 cut(s) 113, 611, 709, 1585, 2455
Hpy99I CGWCG 3 cut(s) 98, 101, 1579
HpyAV CCTTC 4 cut(s) 308, 673, 848, 1397
HpyCH4IV ACGT 4 cut(s) 99, 1577, 1592, 1971
HpyF10VI GCNNNNNNNGC 3 cut(s) 1013, 2006, 2069
HpyF3I CTNAG 6 cut(s) 251, 477, 1319, 1743, 2258, 2480
HpySE526I ACGT 4 cut(s) 99, 1577, 1592, 1971
Hsp92II CATG 8 cut(s) 193, 266, 467, 551, 596, 747, 821, 2167
HspAI GCGC 1 cut(s) 1428
KspI CCGCGG 1 cut(s) 2365
LmnI GCTCC 3 cut(s) 583, 949, 1994
Lsp1109I GCAGC 3 cut(s) 685, 1025, 2047
LweI GCATC 2 cut(s) 1020, 1525
MaeI CTAG 8 cut(s) 387, 642, 1074, 1290, 1338, 2016, 2462, 2520
MaeII ACGT 4 cut(s) 99, 1577, 1592, 1971
MaeIII GTNAC 8 cut(s) 666, 1039, 1330, 1381, 1484, 1864, 1904, 1976
MflI RGATCY 7 cut(s) 123, 298, 786, 1675, 1763, 2493, 2507
MhlI GDGCHC 3 cut(s) 751, 985, 1890
MlsI TGGCCA 2 cut(s) 1258, 1771
MluCI AATT 5 cut(s) 904, 1391, 1395, 1620, 2445
MluNI TGGCCA 2 cut(s) 1258, 1771
MlyI GAGTC 2 cut(s) 246, 404
MmeI TCCRAC 4 cut(s) 1126, 1684, 1983, 2174
Mox20I TGGCCA 2 cut(s) 1258, 1771
MroXI GAANNNNTTC 2 cut(s) 812, 1422
MscI TGGCCA 2 cut(s) 1258, 1771
MseI TTAA 7 cut(s) 431, 504, 1080, 1394, 1667, 1953, 2052
MslI CAYNNNNRTG 3 cut(s) 591, 884, 1607
Msp20I TGGCCA 2 cut(s) 1258, 1771
MspA1I CMGCKG 2 cut(s) 676, 2364
MspI CCGG 3 cut(s) 127, 1713, 1986
MspR9I CCNGG 3 cut(s) 70, 128, 1260
MvaI CCWGG 2 cut(s) 70, 1260
MvnI CGCG 3 cut(s) 1428, 2364, 2433
MwoI GCNNNNNNNGC 3 cut(s) 1013, 2006, 2069
NciI CCSGG 1 cut(s) 128
NcoI CCATGG 1 cut(s) 189
NdeI CATATG 2 cut(s) 977, 1504
NlaIII CATG 8 cut(s) 193, 266, 467, 551, 596, 747, 821, 2167
NlaIV GGNNCC 6 cut(s) 154, 393, 788, 1990, 2229, 2495
NmuCI GTSAC 2 cut(s) 1039, 1976
NspV TTCGAA 1 cut(s) 1565
PagI TCATGA 2 cut(s) 547, 592
PcsI WCGNNNNNNNCGW 2 cut(s) 1571, 1968
PdmI GAANNNNTTC 2 cut(s) 812, 1422
PfeI GAWTC 5 cut(s) 467, 1179, 1347, 2146, 2358
PflMI CCANNNNNTGG 1 cut(s) 1254
PkrI GCNGC 4 cut(s) 675, 1015, 1540, 2062
PleI GAGTC 2 cut(s) 245, 404
PpsI GAGTC 2 cut(s) 245, 404
Ppu21I YACGTR 1 cut(s) 1972
PshAI GACNNNNGTC 1 cut(s) 695
PshBI ATTAAT 2 cut(s) 504, 1394
PsiI TTATAA 2 cut(s) 1025, 2375
Psp6I CCWGG 2 cut(s) 68, 1258
PspEI GGTNACC 1 cut(s) 1976
PspGI CCWGG 2 cut(s) 68, 1258
PspN4I GGNNCC 6 cut(s) 154, 393, 788, 1990, 2229, 2495
PstI CTGCAG 1 cut(s) 2065
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 7 cut(s) 123, 298, 786, 1675, 1763, 2493, 2507
PvuII CAGCTG 1 cut(s) 676
RsaI GTAC 3 cut(s) 612, 1938, 2412
RsaNI GTAC 3 cut(s) 611, 1937, 2411
RseI CAYNNNNRTG 3 cut(s) 591, 884, 1607
SacII CCGCGG 1 cut(s) 2365
SaqAI TTAA 7 cut(s) 431, 504, 1080, 1394, 1667, 1953, 2052
SatI GCNGC 4 cut(s) 674, 1014, 1539, 2061
SchI GAGTC 2 cut(s) 246, 404
ScrFI CCNGG 3 cut(s) 70, 128, 1260
SduI GDGCHC 3 cut(s) 751, 985, 1890
SfaNI GCATC 2 cut(s) 1020, 1525
SfcI CTRYAG 3 cut(s) 294, 891, 2061
Sfr303I CCGCGG 1 cut(s) 2365
SfuI TTCGAA 1 cut(s) 1565
SgrBI CCGCGG 1 cut(s) 2365
SmiMI CAYNNNNRTG 3 cut(s) 591, 884, 1607
SmlI CTYRAG 3 cut(s) 1055, 1241, 2073
SmoI CTYRAG 3 cut(s) 1055, 1241, 2073
SpeI ACTAGT 3 cut(s) 1289, 2015, 2519
Sse9I AATT 5 cut(s) 904, 1391, 1395, 1620, 2445
SsiI CCGC 8 cut(s) 336, 947, 1538, 2362, 2364, 2408, 2431, 2552
SspMI CTAG 8 cut(s) 387, 642, 1074, 1290, 1338, 2016, 2462, 2520
StyD4I CCNGG 3 cut(s) 68, 126, 1258
StyI CCWWGG 5 cut(s) 189, 618, 1469, 1759, 2137
TaiI ACGT 4 cut(s) 102, 1580, 1595, 1974
TaqI TCGA 4 cut(s) 1433, 1565, 1574, 2220
TasI AATT 5 cut(s) 904, 1391, 1395, 1620, 2445
TatI WGTACW 1 cut(s) 610
TauI GCSGC 1 cut(s) 1541
TfiI GAWTC 5 cut(s) 467, 1179, 1347, 2146, 2358
Tru1I TTAA 7 cut(s) 431, 504, 1080, 1394, 1667, 1953, 2052
Tru9I TTAA 7 cut(s) 431, 504, 1080, 1394, 1667, 1953, 2052
TscAI CASTG 4 cut(s) 529, 1609, 1890, 1915
TseFI GTSAC 2 cut(s) 1039, 1976
TseI GCWGC 3 cut(s) 673, 1013, 2060
Tsp45I GTSAC 2 cut(s) 1039, 1976
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 4 cut(s) 529, 1609, 1890, 1915
Van91I CCANNNNNTGG 1 cut(s) 1254
VspI ATTAAT 2 cut(s) 504, 1394
XapI RAATTY 2 cut(s) 904, 2445
XbaI TCTAGA 1 cut(s) 2461
XmnI GAANNNNTTC 2 cut(s) 812, 1422
XspI CTAG 8 cut(s) 387, 642, 1074, 1290, 1338, 2016, 2462, 2520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.