Rh1AG166600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000294
Physical Location & Seq
Forward (+)
31729142 .. 31733143
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG166600.1

Sequence Viewer

Length: 675 bp
ATGGAGTGTCGAGGGTTGAGGCAAGCAATCATCCCGTCCTTTGTGACCTTCTGTTGCCTCATTGGTCACTTAAGTGCTGATATTGAGAAGTTAAACTATGATGTTGATTCCATTATGGTTGAAGATCAGGTTCATGTTGGTGTGATTCTCGATATGGAATCAAAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTCTCTGATTTTTACCATCTCCACAATAACTACAGCACAAGAATAGTTCTCTACAGTAAGGATTCCAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGGTTCGAAATTGGTTCACGATGTGTCAAGGCAAATTGAACGTCTGAGACAGGAAGAAAAGCTTCTAGAGATGGAAAAGACCTGGTTTCGTGAAAAAACAACTCTCATGTCTGATGAGGATATGACCCAGAGTGATCCCAATACGATTGACCTCTATGACTTTCGTGGTCTGTTCCTTATTAGTGGGGCTTCTTTAGCTATTTCTCTTTTCTTCTTCGTAGTTTTATCCACTAGATTTAGGAATCTGTTTCAAGGACTAATGCAGCTGATTCGTATAGAACTGCAGCGTTTCAGGACGTTCTTCTCCTACATAGTATGCAATGGAATTGAGCAAAACTGCATACAAGTTCCTACGCAAGTCATTGTACATGCTGTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

224

Amino Acids

25.72

Weight (kDa)

5.8

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 422
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 660
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 4 cut(s) 122, 192, 332, 545
AjnI CCWGG 1 cut(s) 374
AleI CACNNNNGTG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 5 cut(s) 183, 293, 355, 491, 559
AluI AGCT 5 cut(s) 183, 293, 355, 491, 559
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 1 cut(s) 422
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 183, 556, 577
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 281
AsuII TTCGAA 1 cut(s) 299
BbvI GCAGC 3 cut(s) 170, 568, 589
BccI CCATC 2 cut(s) 222, 358
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 359, 525
BfmI CTRYAG 3 cut(s) 229, 250, 575
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 3 cut(s) 184, 557, 578
BlsI GCNGC 3 cut(s) 185, 558, 579
Bme1390I CCNGG 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 376
Bpu14I TTCGAA 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 619
BseBI CCWGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 2 cut(s) 193, 329
BseXI GCAGC 3 cut(s) 170, 568, 589
BshFI GGCC 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 334
BsnI GGCC 1 cut(s) 197
Bsp119I TTCGAA 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 2 cut(s) 124, 427
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 192, 330
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 1 cut(s) 422
BspT104I TTCGAA 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 619
BsrGI TGTACA 1 cut(s) 658
BssMI GATC 2 cut(s) 124, 427
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 24, 282
BstDEI CTNAG 2 cut(s) 179, 338
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 2 cut(s) 127, 430
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 2 cut(s) 124, 427
BstMWI GCNNNNNNNGC 2 cut(s) 290, 488
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 3 cut(s) 229, 250, 575
BstV1I GCAGC 3 cut(s) 170, 568, 589
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 24, 282
Cfr13I GGNCC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 374
Csp6I GTAC 1 cut(s) 659
CviAII CATG 3 cut(s) 134, 400, 662
CviJI RGCY 7 cut(s) 183, 197, 293, 355, 482, 491, 559
CviKI_1 RGCY 7 cut(s) 183, 197, 293, 355, 482, 491, 559
CviQI GTAC 1 cut(s) 659
DdeI CTNAG 2 cut(s) 179, 338
DpnI GATC 2 cut(s) 126, 429
DpnII GATC 2 cut(s) 124, 427
DraIII CACNNNGTG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 374
FaeI CATG 3 cut(s) 137, 403, 665
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 3 cut(s) 133, 399, 661
Fnu4HI GCNGC 3 cut(s) 184, 557, 578
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 184, 557, 578
FspBI CTAG 2 cut(s) 359, 525
GluI GCNGC 3 cut(s) 184, 557, 578
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 3 cut(s) 137, 403, 665
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 107, 145, 158, 260, 535, 562
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 272, 310
Hpy188I TCNGA 3 cut(s) 205, 339, 406
Hpy188III TCNNGA 5 cut(s) 149, 311, 359, 383, 586
Hpy8I GTNNAC 2 cut(s) 272, 310
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 334, 590
HpyCH4V TGCA 5 cut(s) 186, 556, 577, 612, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 488
HpyF3I CTNAG 2 cut(s) 179, 338
HpySE526I ACGT 2 cut(s) 334, 590
Hsp92II CATG 3 cut(s) 137, 403, 665
Kzo9I GATC 2 cut(s) 124, 427
LpnPI CCDG 8 cut(s) 113, 279, 294, 329, 361, 388, 434, 571
Lsp1109I GCAGC 3 cut(s) 170, 568, 589
MabI ACCWGGT 1 cut(s) 374
MaeI CTAG 2 cut(s) 359, 525
MaeII ACGT 2 cut(s) 334, 590
MaeIII GTNAC 2 cut(s) 43, 65
MalI GATC 2 cut(s) 126, 429
MboI GATC 2 cut(s) 124, 427
MboII GAAGA 5 cut(s) 134, 359, 496, 499, 586
MluCI AATT 3 cut(s) 302, 327, 618
MnlI CCTC 7 cut(s) 5, 12, 68, 209, 285, 403, 455
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 3 cut(s) 71, 92, 673
MslI CAYNNNNRTG 3 cut(s) 72, 138, 191
MspA1I CMGCKG 3 cut(s) 183, 293, 559
MspCI CTTAAG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 290, 488
NdeII GATC 2 cut(s) 124, 427
NlaIII CATG 3 cut(s) 137, 403, 665
NmuCI GTSAC 2 cut(s) 43, 65
NspI RCATGY 1 cut(s) 665
NspV TTCGAA 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 6 cut(s) 107, 145, 158, 260, 535, 562
PkrI GCNGC 3 cut(s) 185, 558, 579
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 579
PvuII CAGCTG 3 cut(s) 183, 293, 559
RsaI GTAC 1 cut(s) 660
RsaNI GTAC 1 cut(s) 659
RseI CAYNNNNRTG 3 cut(s) 72, 138, 191
SaqAI TTAA 3 cut(s) 71, 92, 673
SatI GCNGC 3 cut(s) 184, 557, 578
Sau3AI GATC 2 cut(s) 124, 427
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 376
SexAI ACCWGGT 1 cut(s) 374
SfcI CTRYAG 3 cut(s) 229, 250, 575
SfuI TTCGAA 1 cut(s) 299
SmiMI CAYNNNNRTG 3 cut(s) 72, 138, 191
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 3 cut(s) 302, 327, 618
SspMI CTAG 2 cut(s) 359, 525
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 337, 593
TaqI TCGA 3 cut(s) 10, 150, 299
TasI AATT 3 cut(s) 302, 327, 618
TatI WGTACW 1 cut(s) 658
TfiI GAWTC 6 cut(s) 107, 145, 158, 260, 535, 562
Tru1I TTAA 3 cut(s) 71, 92, 673
Tru9I TTAA 3 cut(s) 71, 92, 673
TseFI GTSAC 2 cut(s) 43, 65
TseI GCWGC 3 cut(s) 183, 556, 577
Tsp45I GTSAC 2 cut(s) 43, 65
TspDTI ATGAA 1 cut(s) 122
Vha464I CTTAAG 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 1 cut(s) 665
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 2 cut(s) 359, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.