RLG00000029125

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000294
Physical Location & Seq
Reverse (-)
33391895 .. 33393518
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029125

Sequence Viewer

Length: 459 bp
ATGATCCGATTAGCCGCTGGCGAGCCCGATTTCGACACCCCTTCCATCGTAGCTGAGGCGGGGATCAATGCGATTCGGGAGGGTATACTAGAGGAGAATGGGATCTCTTACACATTTGATCAGGTTTTGGTTAGTAATGGAGCCAAGCAGTGTATTGATCAAGCAGTTTTGTTCAGAGGAGGCCTCCGCAGGTCACTGGCAAACATGTTTTGTGTCACGTACTCACGTGTCCAGCTCAGATGGACAACACGTAAAGGCGTGTTGAGAGTTTTCTCAAAAGGTTCGAAATTGGTTCATGATTTGTCAAGGCCAATCGAACGTCTGAGACAGGAAGAAAAGCTTATAGAGATGGAGAAGACCTGGTTTCTTAGAAAAACAATTCTCATGTCTGATGAGGATATTAATAAGAAAGATTCCAATACGATTGACCTCTACGACTTACCACCTATCCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

153

Amino Acids

17.39

Weight (kDa)

7.74

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 85
AciI CCGC 3 cut(s) 15, 59, 187
AclWI GGATC 2 cut(s) 71, 110
AcvI CACGTG 1 cut(s) 227
AfaI GTAC 1 cut(s) 221
AflIII ACRYGT 3 cut(s) 204, 226, 248
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 3 cut(s) 53, 235, 340
AluI AGCT 3 cut(s) 53, 235, 340
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 2 cut(s) 71, 110
AoxI GGCC 2 cut(s) 181, 308
AseI ATTAAT 1 cut(s) 402
AsuII TTCGAA 1 cut(s) 284
BanII GRGCYC 1 cut(s) 27
BbrPI CACGTG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 362
BbvCI CCTCAGC 1 cut(s) 54
BccI CCATC 3 cut(s) 53, 234, 343
BciT130I CCWGG 1 cut(s) 361
BclI TGATCA 2 cut(s) 118, 157
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 168, 200
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 284
BsaAI YACGTR 3 cut(s) 219, 227, 251
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 361
BseMII CTCAG 3 cut(s) 45, 250, 314
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 107, 192
BshFI GGCC 2 cut(s) 183, 310
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 2 cut(s) 183, 310
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 5 cut(s) 3, 63, 102, 118, 157
BspACI CCGC 3 cut(s) 15, 59, 187
BspANI GGCC 2 cut(s) 183, 310
BspCNI CTCAG 3 cut(s) 46, 249, 315
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 2 cut(s) 71, 110
BspT104I TTCGAA 1 cut(s) 284
BsrI ACTGG 1 cut(s) 201
BssMI GATC 5 cut(s) 3, 63, 102, 118, 157
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 361
BstBAI YACGTR 3 cut(s) 219, 227, 251
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 19, 23
BstDEI CTNAG 4 cut(s) 54, 236, 323, 368
BstKTI GATC 5 cut(s) 6, 66, 105, 121, 160
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 5 cut(s) 3, 63, 102, 118, 157
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 2 cut(s) 183, 310
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 194
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 19, 23
CciI TCATGA 1 cut(s) 295
CsiI ACCWGGT 1 cut(s) 359
Csp6I GTAC 1 cut(s) 220
CviAII CATG 3 cut(s) 205, 296, 385
CviJI RGCY 8 cut(s) 14, 25, 53, 143, 183, 235, 310, 340
CviKI_1 RGCY 8 cut(s) 14, 25, 53, 143, 183, 235, 310, 340
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 4 cut(s) 54, 236, 323, 368
DpnI GATC 5 cut(s) 5, 65, 104, 120, 159
DpnII GATC 5 cut(s) 3, 63, 102, 118, 157
Eco147I AGGCCT 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 3 cut(s) 208, 299, 388
FaiI YATR 5 cut(s) 86, 206, 297, 344, 386
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 3 cut(s) 204, 295, 384
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 2 cut(s) 118, 157
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 183, 310
Hin1II CATG 3 cut(s) 208, 299, 388
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 73, 413
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 5 cut(s) 8, 176, 239, 324, 391
Hpy188III TCNNGA 2 cut(s) 77, 296
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 4 cut(s) 218, 226, 250, 319
HpyF3I CTNAG 4 cut(s) 54, 236, 323, 368
HpySE526I ACGT 4 cut(s) 218, 226, 250, 319
Hsp92II CATG 3 cut(s) 208, 299, 388
Ksp22I TGATCA 2 cut(s) 118, 157
Kzo9I GATC 5 cut(s) 3, 63, 102, 118, 157
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 3, 107, 175, 182, 245, 314, 346, 373
MabI ACCWGGT 1 cut(s) 359
MaeI CTAG 1 cut(s) 89
MaeII ACGT 4 cut(s) 218, 226, 250, 319
MaeIII GTNAC 2 cut(s) 192, 214
MalI GATC 5 cut(s) 5, 65, 104, 120, 159
MboI GATC 5 cut(s) 3, 63, 102, 118, 157
MboII GAAGA 2 cut(s) 344, 367
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 287, 378
MnlI CCTC 8 cut(s) 49, 73, 85, 170, 173, 194, 388, 440
MseI TTAA 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
NdeII GATC 5 cut(s) 3, 63, 102, 118, 157
NlaIII CATG 3 cut(s) 208, 299, 388
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 192, 214
NspI RCATGY 1 cut(s) 208
NspV TTCGAA 1 cut(s) 284
PagI TCATGA 1 cut(s) 295
PceI AGGCCT 1 cut(s) 183
PciI ACATGT 1 cut(s) 204
PfeI GAWTC 2 cut(s) 73, 413
PkrI GCNGC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
Ppu21I YACGTR 3 cut(s) 219, 227, 251
PscI ACATGT 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 359
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 5 cut(s) 3, 63, 102, 118, 157
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 27
SexAI ACCWGGT 1 cut(s) 359
SfuI TTCGAA 1 cut(s) 284
Sse9I AATT 2 cut(s) 287, 378
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 3 cut(s) 15, 59, 187
SspMI CTAG 1 cut(s) 89
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 359
TaiI ACGT 4 cut(s) 221, 229, 253, 322
TaqI TCGA 3 cut(s) 33, 284, 315
TasI AATT 2 cut(s) 287, 378
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 73, 413
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 155, 201
TseFI GTSAC 2 cut(s) 192, 214
Tsp45I GTSAC 2 cut(s) 192, 214
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 2 cut(s) 155, 201
VspI ATTAAT 1 cut(s) 402
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.