Rh1DG167700

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000294
Physical Location & Seq
Forward (+)
34417807 .. 34422418
4612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG167700.1

Sequence Viewer

Length: 1095 bp
ATGGAGTGTCGAGGGTTGAGGCAAGCAGTCATCCTGTCCTTTGTGACCTTCTGTTGCCTCATTGGTCGCTTAAGTGCTGATATTGAGAAGTTAAACTATGATGTTGATTCTATTATGGTTGAAGATCGGGTTCATGTTGGTGTGATTCTCGATATGGAATCAAAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTCTCTGATTTTTACCATCTCCACAATAACTACAGCACAAGAATAGTTGTCTACAGTAAGGATTCCAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGCTCTTGACTTTTTGGAAAATATCAAAGTGGAAGCAATAATTGGTGCACCAAAAAGAGCAGAAGCAAACCTTCTGGCAGAATTAGGAGAAGCGGCCAAAATCCCTTTAATGTCTCTTTCTCCTGCTCGGACTGATAATAAATATCCCTTCTTTGTTGAGATCATGCGTGCTGATGAAGCGGGTGAAGTTAAGGGAATTAGTGCCATTATTGAAGTTTTCAAATGGAGGGATGTCATCCTTTTATATGATAGCAAAGAATATGAGAGAGACTTCATTCCATCATTGGTCAAGTCATTCCAAGAGATCACACATGGGAGTGTTGCGTACAAAAGTTCCAATATTGCTTCCTCCTCATCAAATGAAGAAATCACTGCAGAGCTCCAAAAGTTGATCAACCTGAAGATTAAGGTTTTCCCTAAAAGTTCGAAATTGGTTCATGATGTGTCAAGGCAAATTGAACGTCTGAGACAGGAAGAAAAGCTTCTAGAGATGGAAAAGACCTGGTTTCGTGAAAAAACAACCCTCATGTCTGATGAGGATATGACCCAGAGTGATCCCAATACGATTGACCTCTATGACTTTCGTGGTCTGTTCCTTATTAGTGGGGCTTCTTTAGCTATTTCTCTTTTCTTCTTCGTAGTTTTATCCACTAGATTTAGGAATCTGTTTCAAGGACTAATGCAGCTGATTCGTATAGAACTGCAGCGTTTCAGGACGTTCTTCTCCTACATAGTATGCAATGGAATTGAGCAAAACTGCATGCAAGTTCCTACGCAAGTCATTGTACATGCTGTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

364

Amino Acids

41.42

Weight (kDa)

5.76

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 44 - 200 2.5e-08 Periplasmic binding protein
ANF_receptor PF01094 61 - 236 9.8e-27 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 2 cut(s) 386, 473
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 713
AfaI GTAC 2 cut(s) 620, 1080
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 6 cut(s) 122, 192, 506, 514, 752, 965
AjnI CCWGG 1 cut(s) 794
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 6 cut(s) 183, 293, 673, 775, 911, 979
AluI AGCT 6 cut(s) 183, 293, 673, 775, 911, 979
Alw21I GWGCWC 2 cut(s) 343, 675
Alw26I GTCTC 3 cut(s) 411, 555, 754
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 1 cut(s) 842
AoxI GGCC 2 cut(s) 195, 387
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 4 cut(s) 183, 293, 976, 997
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
Asp700I GAANNNNTTC 1 cut(s) 774
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 281, 488
AsuII TTCGAA 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 343, 675
BbvI GCAGC 4 cut(s) 170, 280, 988, 1009
BccI CCATC 3 cut(s) 222, 580, 778
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 1 cut(s) 796
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 3 cut(s) 411, 555, 754
BfaI CTAG 2 cut(s) 779, 945
BfmI CTRYAG 4 cut(s) 229, 250, 666, 995
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 5 cut(s) 184, 294, 387, 977, 998
BlsI GCNGC 5 cut(s) 185, 295, 388, 978, 999
Bme1390I CCNGG 1 cut(s) 796
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 796
Bpu14I TTCGAA 1 cut(s) 719
Bse3DI GCAATG 1 cut(s) 1039
BseBI CCWGG 1 cut(s) 796
BseGI GGATG 3 cut(s) 30, 528, 529
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 2 cut(s) 193, 749
BseRI GAGGAG 1 cut(s) 634
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 4 cut(s) 170, 280, 988, 1009
BshFI GGCC 2 cut(s) 197, 389
BsiHKAI GWGCWC 2 cut(s) 343, 675
BsmAI GTCTC 3 cut(s) 411, 555, 754
BsnI GGCC 2 cut(s) 197, 389
Bsp119I TTCGAA 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 343, 675
Bsp1407I TGTACA 1 cut(s) 1078
Bsp143I GATC 5 cut(s) 124, 453, 597, 684, 847
BspACI CCGC 2 cut(s) 386, 473
BspANI GGCC 2 cut(s) 197, 389
BspCNI CTCAG 2 cut(s) 192, 750
BspHI TCATGA 1 cut(s) 730
BspMAI CTGCAG 2 cut(s) 670, 999
BspPI GGATC 1 cut(s) 842
BspT104I TTCGAA 1 cut(s) 719
BspTI CTTAAG 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 1039
BsrGI TGTACA 1 cut(s) 1078
BssMI GATC 5 cut(s) 124, 453, 597, 684, 847
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 1078
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 24, 282, 462, 1055
BstDEI CTNAG 2 cut(s) 179, 758
BstF5I GGATG 3 cut(s) 30, 528, 529
BstKTI GATC 5 cut(s) 127, 456, 600, 687, 850
BstMAI GTCTC 3 cut(s) 411, 555, 754
BstMBI GATC 5 cut(s) 124, 453, 597, 684, 847
BstMWI GCNNNNNNNGC 3 cut(s) 290, 470, 908
BstNI CCWGG 1 cut(s) 796
BstNSI RCATGY 2 cut(s) 1057, 1085
BstSCI CCNGG 1 cut(s) 794
BstSFI CTRYAG 4 cut(s) 229, 250, 666, 995
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 4 cut(s) 170, 280, 988, 1009
BsuRI GGCC 2 cut(s) 197, 389
BtsCI GGATG 3 cut(s) 30, 528, 529
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 4 cut(s) 24, 282, 462, 1055
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 794
Csp6I GTAC 2 cut(s) 619, 1079
CviAII CATG 7 cut(s) 134, 457, 605, 731, 820, 1054, 1082
CviJI RGCY 9 cut(s) 183, 197, 293, 389, 673, 775, 902, 911, 979
CviKI_1 RGCY 9 cut(s) 183, 197, 293, 389, 673, 775, 902, 911, 979
CviQI GTAC 2 cut(s) 619, 1079
DdeI CTNAG 2 cut(s) 179, 758
DpnI GATC 5 cut(s) 126, 455, 599, 686, 849
DpnII GATC 5 cut(s) 124, 453, 597, 684, 847
EaeI YGGCCR 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 675
FaeI CATG 7 cut(s) 137, 460, 608, 734, 823, 1057, 1085
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 759, 791
FatI CATG 7 cut(s) 133, 456, 604, 730, 819, 1053, 1081
FauI CCCGC 1 cut(s) 466
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 5 cut(s) 184, 294, 387, 977, 998
FokI GGATG 3 cut(s) 17, 515, 536
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 5 cut(s) 184, 294, 387, 977, 998
FspBI CTAG 2 cut(s) 779, 945
GluI GCNGC 5 cut(s) 184, 294, 387, 977, 998
HaeIII GGCC 2 cut(s) 197, 389
Hin1II CATG 7 cut(s) 137, 460, 608, 734, 823, 1057, 1085
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 6 cut(s) 107, 145, 158, 260, 955, 982
HphI GGTGA 2 cut(s) 281, 488
Hpy166II GTNNAC 3 cut(s) 250, 272, 341
Hpy188I TCNGA 4 cut(s) 205, 423, 759, 826
Hpy188III TCNNGA 6 cut(s) 149, 299, 731, 779, 803, 1006
Hpy8I GTNNAC 3 cut(s) 250, 272, 341
HpyAV CCTTC 3 cut(s) 58, 374, 451
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 754, 1010
HpyCH4V TGCA 8 cut(s) 186, 341, 668, 976, 997, 1032, 1053, 1057
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 470, 908
HpyF3I CTNAG 2 cut(s) 179, 758
HpySE526I ACGT 2 cut(s) 754, 1010
Hsp92II CATG 7 cut(s) 137, 460, 608, 734, 823, 1057, 1085
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 5 cut(s) 124, 453, 597, 684, 847
LmnI GCTCC 1 cut(s) 678
Lsp1109I GCAGC 4 cut(s) 170, 280, 988, 1009
MabI ACCWGGT 1 cut(s) 794
MaeI CTAG 2 cut(s) 779, 945
MaeII ACGT 2 cut(s) 754, 1010
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 126, 455, 599, 686, 849
MboI GATC 5 cut(s) 124, 453, 597, 684, 847
MboII GAAGA 7 cut(s) 134, 668, 706, 779, 916, 919, 1006
MhlI GDGCHC 2 cut(s) 343, 675
MluCI AATT 6 cut(s) 333, 374, 489, 722, 747, 1038
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 6 cut(s) 71, 92, 401, 483, 699, 1093
MslI CAYNNNNRTG 3 cut(s) 138, 191, 609
MspA1I CMGCKG 3 cut(s) 183, 293, 979
MspCI CTTAAG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 796
MvaI CCWGG 1 cut(s) 796
MwoI GCNNNNNNNGC 3 cut(s) 290, 470, 908
NdeII GATC 5 cut(s) 124, 453, 597, 684, 847
NlaIII CATG 7 cut(s) 137, 460, 608, 734, 823, 1057, 1085
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 2 cut(s) 1057, 1085
NspV TTCGAA 1 cut(s) 719
PaeI GCATGC 1 cut(s) 1057
PagI TCATGA 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 6 cut(s) 107, 145, 158, 260, 955, 982
PkrI GCNGC 5 cut(s) 185, 295, 388, 978, 999
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 794
PspGI CCWGG 1 cut(s) 794
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 2 cut(s) 670, 999
PvuII CAGCTG 3 cut(s) 183, 293, 979
RsaI GTAC 2 cut(s) 620, 1080
RsaNI GTAC 2 cut(s) 619, 1079
RseI CAYNNNNRTG 3 cut(s) 138, 191, 609
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 6 cut(s) 71, 92, 401, 483, 699, 1093
SatI GCNGC 5 cut(s) 184, 294, 387, 977, 998
Sau3AI GATC 5 cut(s) 124, 453, 597, 684, 847
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 796
SduI GDGCHC 2 cut(s) 343, 675
SexAI ACCWGGT 1 cut(s) 794
SfcI CTRYAG 4 cut(s) 229, 250, 666, 995
SfuI TTCGAA 1 cut(s) 719
SmiMI CAYNNNNRTG 3 cut(s) 138, 191, 609
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 6 cut(s) 333, 374, 489, 722, 747, 1038
SsiI CCGC 2 cut(s) 386, 473
SspI AATATT 1 cut(s) 634
SspMI CTAG 2 cut(s) 779, 945
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 1 cut(s) 794
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 757, 1013
TaqI TCGA 3 cut(s) 10, 150, 719
TasI AATT 6 cut(s) 333, 374, 489, 722, 747, 1038
TatI WGTACW 1 cut(s) 1078
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 6 cut(s) 107, 145, 158, 260, 955, 982
Tru1I TTAA 6 cut(s) 71, 92, 401, 483, 699, 1093
Tru9I TTAA 6 cut(s) 71, 92, 401, 483, 699, 1093
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 4 cut(s) 183, 293, 976, 997
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 122, 483, 556, 669, 719
TspRI CASTG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 70
VneI GTGCAC 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 2 cut(s) 1057, 1085
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 2 cut(s) 779, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.