RLG00000029111

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000294
Physical Location & Seq
Reverse (-)
33149998 .. 33152040
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029111

Sequence Viewer

Length: 546 bp
ATGCTGACATTTAAACAGATAAATTTACACTCAAGAGGTGGAGGGCCAAAGCATAAGTTGTATTATACAGTTGAACAATTTGCTGATGCTTTATCAAGAGGAAGTAAGCATGGTGGTGTTTCTGCTATGGCCGGAGAAATTCCATACCTCAAAATCTTCCTAGCAAAGTATCCTGCTGACTACTCCATGATTAAACCCAAGTTAACTACCAATGATTTTGGCTTTGTTTTTCCTAAAGGTTCTAAATTGGTCCATGACATGTCGAGACAAATTGAAATTTTAAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTGAGATCTCAGATGCATTGAATAGTCCTAGTCCAGGTACTCTTAATCTCAACAGCTTTCTAGGTTTACTCCTTGTTAGTGGCGTTTCTTCAGCTGCTGCTCTTATATTATTCTTCATTTTGTCCCTTAAAGATAGATGGCGAGTCCTAAAGATAAACATAGCTATATCCCTGAGTAGAGGACAACTGATGCAACTTATACGAAGGTCCCTTTCTAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

9.91

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 3 cut(s) 22, 138, 276
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 74, 275, 343
AjnI CCWGG 2 cut(s) 317, 355
AluBI AGCT 4 cut(s) 298, 378, 416, 485
AluI AGCT 4 cut(s) 298, 378, 416, 485
Alw26I GTCTC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 3 cut(s) 44, 129, 315
ApeKI GCWGC 2 cut(s) 416, 419
ApoI RAATTY 3 cut(s) 22, 138, 276
AspS9I GGNCC 3 cut(s) 44, 250, 528
AvaII GGWCC 2 cut(s) 250, 528
BbvI GCAGC 2 cut(s) 403, 406
BccI CCATC 2 cut(s) 301, 453
BciT130I CCWGG 2 cut(s) 319, 357
BciVI GTATCC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 3 cut(s) 161, 351, 383
BfuI GTATCC 1 cut(s) 180
BglII AGATCT 1 cut(s) 327
BisI GCNGC 2 cut(s) 417, 420
BlsI GCNGC 2 cut(s) 418, 421
Bme1390I CCNGG 2 cut(s) 319, 357
Bme18I GGWCC 2 cut(s) 250, 528
BmgT120I GGNCC 3 cut(s) 44, 250, 528
BmiI GGNNCC 1 cut(s) 530
BmrFI CCNGG 2 cut(s) 319, 357
BmsI GCATC 3 cut(s) 76, 325, 501
BpuEI CTTGAG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 319, 357
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 345, 485
BseXI GCAGC 2 cut(s) 403, 406
BshFI GGCC 3 cut(s) 46, 131, 317
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 2 cut(s) 430, 514
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 430, 514
BsnI GGCC 3 cut(s) 46, 131, 317
Bsp143I GATC 1 cut(s) 327
BspANI GGCC 3 cut(s) 46, 131, 317
BspCNI CTCAG 2 cut(s) 344, 486
BspLI GGNNCC 1 cut(s) 530
BssMI GATC 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 319, 357
Bst4CI ACNGT 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 331, 494, 537
BstENI CCTNNNNNAGG 1 cut(s) 354
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 327
BstNI CCWGG 2 cut(s) 319, 357
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 317, 355
BstV1I GCAGC 2 cut(s) 403, 406
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 3 cut(s) 46, 131, 317
CaiI CAGNNNCTG 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 44, 250, 528
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 110, 187, 254, 259
CviJI RGCY 8 cut(s) 46, 131, 222, 298, 317, 378, 416, 485
CviKI_1 RGCY 8 cut(s) 46, 131, 222, 298, 317, 378, 416, 485
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 3 cut(s) 331, 494, 537
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
DraI TTTAAA 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 250, 528
Eco57I CTGAAG 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 528
EcoRII CCWGG 2 cut(s) 317, 355
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 4 cut(s) 113, 190, 257, 262
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 2 cut(s) 430, 514
FatI CATG 4 cut(s) 109, 186, 253, 258
Fnu4HI GCNGC 2 cut(s) 417, 420
Fsp4HI GCNGC 2 cut(s) 417, 420
FspBI CTAG 3 cut(s) 161, 351, 383
GluI GCNGC 2 cut(s) 417, 420
HaeIII GGCC 3 cut(s) 46, 131, 317
HapII CCGG 1 cut(s) 132
Hin1II CATG 4 cut(s) 113, 190, 257, 262
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 465
HpaI GTTAAC 1 cut(s) 204
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 204, 389
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 3 cut(s) 33, 96, 264
Hpy8I GTNNAC 2 cut(s) 204, 389
HpyAV CCTTC 2 cut(s) 284, 519
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 338, 514
HpyF3I CTNAG 3 cut(s) 331, 494, 537
Hsp92II CATG 4 cut(s) 113, 190, 257, 262
KspAI GTTAAC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 327
LpnPI CCDG 7 cut(s) 145, 186, 304, 331, 342, 369, 506
Lsp1109I GCAGC 2 cut(s) 403, 406
LweI GCATC 3 cut(s) 76, 325, 501
MaeI CTAG 3 cut(s) 161, 351, 383
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 4 cut(s) 148, 299, 402, 427
MflI RGATCY 1 cut(s) 327
MluCI AATT 6 cut(s) 22, 77, 138, 245, 270, 276
MlyI GAGTC 1 cut(s) 474
MnlI CCTC 5 cut(s) 29, 35, 92, 158, 494
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 6 cut(s) 12, 192, 203, 281, 366, 450
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 319, 357
MvaI CCWGG 2 cut(s) 319, 357
NdeII GATC 1 cut(s) 327
NlaIII CATG 4 cut(s) 113, 190, 257, 262
NlaIV GGNNCC 1 cut(s) 530
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 262
PceI AGGCCT 1 cut(s) 317
PciI ACATGT 1 cut(s) 258
PkrI GCNGC 2 cut(s) 418, 421
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 528
PscI ACATGT 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 317, 355
PspGI CCWGG 2 cut(s) 317, 355
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 3 cut(s) 44, 250, 528
PspPPI RGGWCCY 1 cut(s) 528
PstNI CAGNNNCTG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 6 cut(s) 12, 192, 203, 281, 366, 450
SatI GCNGC 2 cut(s) 417, 420
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 3 cut(s) 44, 250, 528
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 2 cut(s) 319, 357
SfaNI GCATC 3 cut(s) 76, 325, 501
SinI GGWCC 2 cut(s) 250, 528
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 6 cut(s) 22, 77, 138, 245, 270, 276
SseBI AGGCCT 1 cut(s) 317
SspMI CTAG 3 cut(s) 161, 351, 383
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 317, 355
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 263
TasI AATT 6 cut(s) 22, 77, 138, 245, 270, 276
Tru1I TTAA 6 cut(s) 12, 192, 203, 281, 366, 450
Tru9I TTAA 6 cut(s) 12, 192, 203, 281, 366, 450
TseI GCWGC 2 cut(s) 416, 419
TspDTI ATGAA 1 cut(s) 427
VpaK11BI GGWCC 2 cut(s) 250, 528
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 3 cut(s) 22, 138, 276
XceI RCATGY 1 cut(s) 262
XspI CTAG 3 cut(s) 161, 351, 383
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.