pycom02g20100

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000294
Physical Location & Seq
Reverse (-)
18233566 .. 18233796
231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20100.1

Sequence Viewer

Length: 231 bp
ATGCCGGACGATAGTATGGAGGATAATACTATGAGTAGTCCCTCCAATACTCTTGGCCTCTACGACTTTCTTGGTTTATTCCTTGTCAGCGGGGTTTCGTCCGCTGTTGCACTCTTCGTATTCTTAATCATTTCCCAAACATTTAGAAATCTGATTAAAGGACAACTGCAGCTAATTGGAGGACGACTGCAGCGTTTAAGGATGTTCCTCTCGAATGTAGTTAGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

77

Amino Acids

8.37

Weight (kDa)

5.96

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 90, 102
AfaI GTAC 1 cut(s) 226
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 169, 190
BbvI GCAGC 2 cut(s) 181, 202
BfmI CTRYAG 2 cut(s) 167, 188
BisI GCNGC 2 cut(s) 170, 191
BlsI GCNGC 2 cut(s) 171, 192
BseGI GGATG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 181, 202
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 57
BspACI CCGC 2 cut(s) 90, 102
BspANI GGCC 1 cut(s) 57
BspMAI CTGCAG 2 cut(s) 171, 192
Bst6I CTCTTC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 207
BstSFI CTRYAG 2 cut(s) 167, 188
BstV1I GCAGC 2 cut(s) 181, 202
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 207
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 228
CviJI RGCY 2 cut(s) 57, 172
CviKI_1 RGCY 2 cut(s) 57, 172
CviQI GTAC 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
FaeI CATG 1 cut(s) 231
FaiI YATR 3 cut(s) 17, 32, 229
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 170, 191
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 170, 191
GluI GCNGC 2 cut(s) 170, 191
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 5
Hin1II CATG 1 cut(s) 231
HpaII CCGG 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 110, 169, 190
Hsp92II CATG 1 cut(s) 231
LpnPI CCDG 1 cut(s) 18
Lsp1109I GCAGC 2 cut(s) 181, 202
MboII GAAGA 1 cut(s) 106
MluCI AATT 1 cut(s) 174
MnlI CCTC 5 cut(s) 13, 52, 68, 173, 218
MseI TTAA 3 cut(s) 125, 156, 197
MspA1I CMGCKG 2 cut(s) 90, 104
MspI CCGG 1 cut(s) 5
NlaIII CATG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PkrI GCNGC 2 cut(s) 171, 192
PstI CTGCAG 2 cut(s) 171, 192
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 125, 156, 197
SatI GCNGC 2 cut(s) 170, 191
SetI ASST 1 cut(s) 174
SfcI CTRYAG 2 cut(s) 167, 188
SgeI CNNG 6 cut(s) 17, 65, 83, 95, 103, 223
Sse9I AATT 1 cut(s) 174
SsiI CCGC 2 cut(s) 90, 102
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 224
Tru1I TTAA 3 cut(s) 125, 156, 197
Tru9I TTAA 3 cut(s) 125, 156, 197
TseI GCWGC 2 cut(s) 169, 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.