Rw0G017550

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00785
OG0000294
Physical Location & Seq
Forward (+)
8641 .. 14396
5756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017550.1

Sequence Viewer

Length: 2616 bp
ATGGAGTTTCAAGGGAAGAAGCAAACCATTTTCTGCCTGTCCTTTGTGACCTTCTGCCTCCTCGGTGACATTTTTGCTCAAAGTAATGAAGAATTAATGCATTATGATAATAATCCGCTAACTGTGGAAGAAGTTCGTGTCGGTGTGATTCTGGATATGCAATCAAGGGAAGGAAAGATTGTACTCGGCTGCATTTCGACGGCTCTGTCAGATTTTTATCATCTGCATAATAATTACAGCACAAGAGTGGTACTCCACAGTAGAGACTCCAGTGGAAAACATCTACATGCTCTATCAGCTGCTCTTGATCTTTTGAATAACATCAAAGTGGAAGCAATAATTGGTGCACAAACAAGAATGGAAGCAAACCTATTAGCGGATTTAGGAGAAGATGTTGAAGTCCCTATATTGTCTCTATCTCAACCTAGTCTAGCCCCTCCTCTGACCGACAAATATCCCTTCTTTGTTGAGGTCACACAGGATGAAACTTTGCAGGTTACAGGGATCACTGCTCTTATTGAAATCTTCACATGGAGAAATGTTATCCTTCTATATGAGAGGACAAATCATGCAAGTGACATAATTCCATCTTTGATCAATTCCTTCCAAGAGAAAAATGTCTATATTTCATATATAAGTTCCATTTCTGTTTCCTCAACTACTGAACAAATCATTGAAGAGCTTCAAAAGCTAAAGGCATTAGACAATACAGTATTTGTGGTGCATATCTCACATTTTCTTGTACCTCGGCTTTTTATGGATGCAAAGAAGCTAGGAATGATGAGTGAAGGGTATGCTTGGATTCTGACATCAACAAGCTTGAATTTCTTGAATTCTATGGATTCTGCTGTGATTGAATCAATGCAAGGAGTGCTGGGGTTGAAGTCGCATATTCCAACTTCAAGGAGCCTCCATAATCTTACTTCTAGATTGAGGAGAAAATTGTACATCGAGGAGTCCCATATGGAAATACTGGAATTAAGTGCTGATGCAATCTGGGCATATGATGCAACTTGGGTCCTAGCAGAAGCAGTTGAGAGGTCACGGATTAAAATTTCTACAAGACTAAATCGAAAGGATTTAAACGATATTAAATCCTCTAAGACTGGAAGTGTGCTTCGTAAAGAAATACTGCAAAGTAGGGTTAAAGGATTAAGTGGTGAAATTCAGTATCCAAAGCAGAAGCTAATTGCAGACAAACTTGAGATAGTAAATGTGATAGGGAAGGGGGAGAGAAGAATTGGAATTTTGACTTTTGAAGAAGAAAAAACAAAAGAATCACAGTCCCTTAAAAGCAAAAGAAATTTACTTTCCACCAGTGATCTGGAAACTGTCATATGGCCTGGAGGATCATCAACCATTACGAAAGGTTCCAAGAGGAAATTGAGTGAAACAAAATTAAGAGTTGGTGTTCCCCCAAAGAGAGGGTTCGAGGAACTTGTGCATGTGAAACATGACTTCCAAACCAATAAAACATATTTCACAGGCTTCTGTATAGATGTGTTTGAAACTGCAATAAGAGGATTGCCCTATAAAGTACAATATGAGTTTATCCCATTTGAGAATGCTAATGAACTTTCGGCTGGGAGGTACAATGATCTTGTTTACCAGGTTTATCTCCAGGTATACGATGCTGTTGTTGGAGATACGACAATCACATCAAACAGATCGTTATATGTTGATTTTACAGTACCATATTCTGACTTGGGCGTGGGAATGCTAGTAGCAAATGAAAAGGAAAACATGTGGATTTTCTTAAGACCTCTTTCAGCAGATCTTTGGATGACAAGTGCTGGTTTATTTATGCTAACTGGTTTTGTTGTGTGGGTAATTGAGCGTCCTACAAACACAGAATTCCAGGGCACATTATCACAGCAAATTGGAACAATATTCTGGTTCTCCTTTTCAACCCTTGTGTTTGCTCATAGGGAGAAGTTGTTGAACAATTCAGCAAAGTTTGTAGTCGTCATATGGGTTTTTGTAGTTCTTATATTGACTTCTAGTTACACTGCAACTTTAGCATCAATGATGACAGTTAAACAAATGCAATTAAATGCCGGAGGACACTACATAGGTTACCAGTTTGTACTTGAATTTCAGTGGGCCGGGGCTAAACCATATCGTTCGGTTGAAGCATATGCTGATGCTTTATCAAGAGGGAGTAAGCATGGTGGTGTTTCTGCTATTGTTGACGAGGTACCATACATTAAGGTCTTCCTTGCAAAGTATTCTGAGGGCTACTCCATGATTAAAACCGAGTCTACTACCAATGGTTTTGGCTTTGCTTTCCCTAAAGGCTCGAAATTGGCACAAGACATGTCAACGCAAATTGAAAAATTGAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCATTATAAGGGAAATCACATGTCTGAGGACACAACAAGTCCTCCCAATACTCTTAATCTCAGCAGCTTTTGTGGTTTATTCCTTGTTACGGGGGTTTCTTCAGCTTTTGCTCTATTTTTGTTCATAATTTCTCCACTCAGAGAGAAATGGCAACTTGTGAAGAAATGCAGATATATTATTCAGGGTAAGCTGCTGGATGTATGGAGATCCCTTTCTAACAGAGTTTCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

871

Amino Acids

98.35

Weight (kDa)

7.05

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 45 - 349 2.2e-08 Periplasmic binding protein
ANF_receptor PF01094 64 - 408 8.2e-60 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 485 - 577 1.9e-09 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 487 - 795 1.4e-10 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 591 - 826 4.7e-28 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2388
AasI GACNNNNNNGTC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 484
Acc65I GGTACC 1 cut(s) 2197
AccB1I GGYRCC 1 cut(s) 2197
AccI GTMKAC 2 cut(s) 1626, 2261
AciI CCGC 2 cut(s) 116, 377
AclWI GGATC 3 cut(s) 512, 1357, 2583
AcsI RAATTY 8 cut(s) 823, 832, 1053, 1164, 1245, 1303, 1853, 2093
AcuI CTGAAG 1 cut(s) 2466
AfaI GTAC 9 cut(s) 183, 252, 744, 947, 1539, 1592, 1692, 2088, 2199
AfiI CCNNNNNNNGG 3 cut(s) 376, 1424, 2470
AflII CTTAAG 1 cut(s) 1756
AflIII ACRYGT 3 cut(s) 1743, 2316, 2400
AjnI CCWGG 5 cut(s) 1342, 1608, 1620, 1857, 2375
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AleI CACNNNNGTG 1 cut(s) 245
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 258, 417
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 3 cut(s) 512, 1357, 2583
AoxI GGCC 3 cut(s) 1340, 2103, 2373
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 189, 299, 2445, 2572
ApoI RAATTY 8 cut(s) 823, 832, 1053, 1164, 1245, 1303, 1853, 2093
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 2 cut(s) 132, 681
Asp718I GGTACC 1 cut(s) 2197
AspS9I GGNCC 2 cut(s) 1018, 2103
AsuC2I CCSGG 1 cut(s) 2107
AsuHPI GGTGA 2 cut(s) 77, 1172
AvaII GGWCC 1 cut(s) 1018
BaeGI GKGCMC 2 cut(s) 349, 1865
BanI GGYRCC 1 cut(s) 2197
BbsI GAAGAC 1 cut(s) 2206
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 4 cut(s) 176, 286, 2457, 2559
BccI CCATC 2 cut(s) 595, 2359
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 5 cut(s) 1344, 1610, 1622, 1859, 2377
BciVI GTATCC 1 cut(s) 1182
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 1 cut(s) 2107
BcoDI GTCTC 2 cut(s) 258, 417
BfaI CTAG 7 cut(s) 426, 431, 773, 927, 1022, 1721, 2001
BfrI CTTAAG 1 cut(s) 1756
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 1 cut(s) 1182
BglII AGATCT 1 cut(s) 1774
BisI GCNGC 4 cut(s) 190, 300, 2446, 2573
BlsI GCNGC 4 cut(s) 191, 301, 2447, 2574
Bme1390I CCNGG 6 cut(s) 1344, 1610, 1622, 1859, 2107, 2377
Bme18I GGWCC 1 cut(s) 1018
BmgT120I GGNCC 2 cut(s) 1018, 2103
BmiI GGNNCC 4 cut(s) 908, 1019, 1372, 2199
BmrFI CCNGG 6 cut(s) 1344, 1610, 1622, 1859, 2107, 2377
BmsI GCATC 6 cut(s) 751, 979, 997, 1621, 2030, 2134
BpiI GAAGAC 1 cut(s) 2206
BplI GAGNNNNNCTC 4 cut(s) 237, 269, 2225, 2257
BpmI CTGGAG 3 cut(s) 253, 1365, 1604
BpuEI CTTGAG 1 cut(s) 1223
BpuMI CCSGG 1 cut(s) 2107
BsaBI GATNNNNATC 2 cut(s) 111, 216
BsaJI CCNNGG 4 cut(s) 61, 746, 1858, 2106
BsaXI ACNNNNNCTCC 6 cut(s) 378, 408, 1922, 1952, 2407, 2437
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 1424, 2470
Bse1I ACTGG 6 cut(s) 270, 978, 1111, 1317, 1816, 2080
Bse8I GATNNNNATC 2 cut(s) 111, 216
BseBI CCWGG 5 cut(s) 1344, 1610, 1622, 1859, 2377
BseDI CCNNGG 4 cut(s) 61, 746, 1858, 2106
BseGI GGATG 4 cut(s) 487, 766, 1788, 2584
BseJI GATNNNNATC 2 cut(s) 111, 216
BseLI CCNNNNNNNGG 3 cut(s) 376, 1424, 2470
BseMII CTCAG 4 cut(s) 2223, 2397, 2455, 2533
BseNI ACTGG 6 cut(s) 270, 978, 1111, 1317, 1816, 2080
BseRI GAGGAG 4 cut(s) 50, 429, 949, 968
BseSI GKGCMC 2 cut(s) 349, 1865
BseXI GCAGC 4 cut(s) 176, 286, 2457, 2559
BseYI CCCAGC 2 cut(s) 874, 1583
BshFI GGCC 3 cut(s) 1342, 2105, 2375
BshNI GGYRCC 1 cut(s) 2197
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 2058, 2106
BslFI GGGAC 3 cut(s) 386, 943, 1270
BslI CCNNNNNNNGG 3 cut(s) 376, 1424, 2470
BsmAI GTCTC 2 cut(s) 258, 417
BsmFI GGGAC 3 cut(s) 386, 943, 1270
BsmI GAATGC 2 cut(s) 1570, 1722
BsnI GGCC 3 cut(s) 1342, 2105, 2375
Bsp1286I GDGCHC 2 cut(s) 349, 1865
Bsp1407I TGTACA 1 cut(s) 945
Bsp143I GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
BspACI CCGC 2 cut(s) 116, 377
BspANI GGCC 3 cut(s) 1342, 2105, 2375
BspCNI CTCAG 4 cut(s) 2224, 2398, 2454, 2532
BspLI GGNNCC 4 cut(s) 908, 1019, 1372, 2199
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 3 cut(s) 512, 1357, 2583
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 2197
BspTI CTTAAG 1 cut(s) 1756
BsrGI TGTACA 1 cut(s) 945
BsrI ACTGG 6 cut(s) 270, 978, 1111, 1317, 1816, 2080
BssECI CCNNGG 4 cut(s) 61, 746, 1858, 2106
BssMI GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
BssNAI GTATAC 1 cut(s) 1627
Bst1107I GTATAC 1 cut(s) 1627
Bst2UI CCWGG 5 cut(s) 1344, 1610, 1622, 1859, 2377
Bst4CI ACNGT 7 cut(s) 124, 260, 712, 1284, 1333, 1690, 2035
Bst6I CTCTTC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 1756
BstAPI GCANNNNNTGC 2 cut(s) 871, 1007
BstAUI TGTACA 1 cut(s) 945
BstDEI CTNAG 5 cut(s) 1101, 2232, 2406, 2441, 2519
BstEII GGTNACC 1 cut(s) 2075
BstF5I GGATG 4 cut(s) 487, 766, 1788, 2584
BstKTI GATC 9 cut(s) 310, 507, 597, 1324, 1352, 1600, 1670, 1777, 2591
BstMAI GTCTC 2 cut(s) 258, 417
BstMBI GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
BstMWI GCNNNNNNNGC 6 cut(s) 296, 688, 871, 998, 1007, 2018
BstNI CCWGG 5 cut(s) 1344, 1610, 1622, 1859, 2377
BstNSI RCATGY 5 cut(s) 290, 1448, 1747, 2320, 2404
BstPI GGTNACC 1 cut(s) 2075
BstSCI CCNGG 6 cut(s) 1342, 1608, 1620, 1857, 2105, 2375
BstSLI GKGCMC 2 cut(s) 349, 1865
BstV1I GCAGC 4 cut(s) 176, 286, 2457, 2559
BstV2I GAAGAC 1 cut(s) 2206
BstX2I RGATCY 2 cut(s) 1774, 2588
BstXI CCANNNNNNTGG 1 cut(s) 1324
BstYI RGATCY 2 cut(s) 1774, 2588
BstZ17I GTATAC 1 cut(s) 1627
BsuI GTATCC 1 cut(s) 1182
BsuRI GGCC 3 cut(s) 1342, 2105, 2375
BtsCI GGATG 4 cut(s) 487, 766, 1788, 2584
BtsI GCAGTG 2 cut(s) 507, 2007
BtsIMutI CAGTG 5 cut(s) 277, 507, 1324, 2007, 2105
BveI ACCTGC 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 1018, 2103
CseI GACGC 1 cut(s) 1826
CsiI ACCWGGT 1 cut(s) 1608
Csp6I GTAC 9 cut(s) 182, 251, 743, 946, 1538, 1591, 1691, 2087, 2198
CviQI GTAC 9 cut(s) 182, 251, 743, 946, 1538, 1591, 1691, 2087, 2198
DdeI CTNAG 5 cut(s) 1101, 2232, 2406, 2441, 2519
DpnI GATC 9 cut(s) 309, 506, 596, 1323, 1351, 1599, 1669, 1776, 2590
DpnII GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
DraI TTTAAA 1 cut(s) 1083
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 2375
Eco47I GGWCC 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 2466
Eco91I GGTNACC 1 cut(s) 2075
EcoO109I RGGNCCY 1 cut(s) 1018
EcoO65I GGTNACC 1 cut(s) 2075
EcoRI GAATTC 2 cut(s) 832, 1853
EcoRII CCWGG 5 cut(s) 1342, 1608, 1620, 1857, 2375
EcoT22I ATGCAT 1 cut(s) 102
FalI AAGNNNNNCTT 2 cut(s) 2340, 2372
FaqI GGGAC 3 cut(s) 386, 943, 1270
FauNDI CATATG 5 cut(s) 963, 1003, 1337, 1970, 2137
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 2 cut(s) 1626, 2261
Fnu4HI GCNGC 4 cut(s) 190, 300, 2446, 2573
FokI GGATG 4 cut(s) 494, 773, 1795, 2591
Fsp4HI GCNGC 4 cut(s) 190, 300, 2446, 2573
FspBI CTAG 7 cut(s) 426, 431, 773, 927, 1022, 1721, 2001
GluI GCNGC 4 cut(s) 190, 300, 2446, 2573
GsaI CCCAGC 2 cut(s) 878, 1587
GsuI CTGGAG 3 cut(s) 253, 1365, 1604
HaeIII GGCC 3 cut(s) 1342, 2105, 2375
HapII CCGG 2 cut(s) 2058, 2106
HgaI GACGC 1 cut(s) 1826
HincII GTYRAC 2 cut(s) 2191, 2322
HindII GTYRAC 2 cut(s) 2191, 2322
HindIII AAGCTT 2 cut(s) 817, 2354
HinfI GANTC 8 cut(s) 148, 266, 802, 842, 857, 956, 1277, 2258
HpaII CCGG 2 cut(s) 2058, 2106
HphI GGTGA 2 cut(s) 77, 1172
Hpy166II GTNNAC 6 cut(s) 347, 1606, 1627, 2191, 2262, 2322
Hpy188I TCNGA 7 cut(s) 211, 444, 807, 1702, 2233, 2407, 2522
Hpy188III TCNNGA 6 cut(s) 152, 305, 829, 927, 1325, 2154
Hpy8I GTNNAC 6 cut(s) 347, 1606, 1627, 2191, 2262, 2322
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 8 cut(s) 61, 164, 469, 557, 613, 782, 1219, 2342
HpyCH4III ACNGT 7 cut(s) 124, 260, 712, 1284, 1333, 1690, 2035
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 688, 871, 998, 1007, 2018
HpyF3I CTNAG 5 cut(s) 1101, 2232, 2406, 2441, 2519
KpnI GGTACC 1 cut(s) 2201
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 1 cut(s) 906
Lsp1109I GCAGC 4 cut(s) 176, 286, 2457, 2559
LweI GCATC 6 cut(s) 751, 979, 997, 1621, 2030, 2134
MabI ACCWGGT 1 cut(s) 1608
MaeI CTAG 7 cut(s) 426, 431, 773, 927, 1022, 1721, 2001
MaeIII GTNAC 9 cut(s) 46, 65, 472, 496, 575, 1041, 2003, 2075, 2467
MalI GATC 9 cut(s) 309, 506, 596, 1323, 1351, 1599, 1669, 1776, 2590
MboI GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
MflI RGATCY 2 cut(s) 1774, 2588
MhlI GDGCHC 2 cut(s) 349, 1865
MlyI GAGTC 3 cut(s) 260, 965, 2267
MmeI TCCRAC 2 cut(s) 920, 1621
Mph1103I ATGCAT 1 cut(s) 102
MroXI GAANNNNTTC 2 cut(s) 132, 681
MslI CAYNNNNRTG 5 cut(s) 245, 285, 326, 573, 2172
MspA1I CMGCKG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 1756
MspI CCGG 2 cut(s) 2058, 2106
MspR9I CCNGG 6 cut(s) 1344, 1610, 1622, 1859, 2107, 2377
Mva1269I GAATGC 2 cut(s) 1570, 1722
MvaI CCWGG 5 cut(s) 1344, 1610, 1622, 1859, 2377
MwoI GCNNNNNNNGC 6 cut(s) 296, 688, 871, 998, 1007, 2018
NciI CCSGG 1 cut(s) 2107
NdeI CATATG 5 cut(s) 963, 1003, 1337, 1970, 2137
NdeII GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
NlaIV GGNNCC 4 cut(s) 908, 1019, 1372, 2199
NmeAIII GCCGAG 2 cut(s) 165, 727
NmuCI GTSAC 5 cut(s) 46, 65, 472, 575, 1041
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 5 cut(s) 290, 1448, 1747, 2320, 2404
OliI CACNNNNGTG 1 cut(s) 245
PceI AGGCCT 1 cut(s) 2375
PciI ACATGT 3 cut(s) 1743, 2316, 2400
PciSI GCTCTTC 1 cut(s) 672
PctI GAATGC 2 cut(s) 1570, 1722
PdmI GAANNNNTTC 2 cut(s) 132, 681
PfeI GAWTC 5 cut(s) 148, 802, 842, 857, 1277
PkrI GCNGC 4 cut(s) 191, 301, 2447, 2574
PleI GAGTC 3 cut(s) 260, 964, 2266
PpsI GAGTC 3 cut(s) 260, 964, 2266
PpuMI RGGWCCY 1 cut(s) 1018
PscI ACATGT 3 cut(s) 1743, 2316, 2400
PshBI ATTAAT 1 cut(s) 95
PsiI TTATAA 1 cut(s) 2388
Psp5II RGGWCCY 1 cut(s) 1018
Psp6I CCWGG 5 cut(s) 1342, 1608, 1620, 1857, 2375
PspEI GGTNACC 1 cut(s) 2075
PspFI CCCAGC 2 cut(s) 874, 1583
PspGI CCWGG 5 cut(s) 1342, 1608, 1620, 1857, 2375
PspN4I GGNNCC 4 cut(s) 908, 1019, 1372, 2199
PspPI GGNCC 2 cut(s) 1018, 2103
PspPPI RGGWCCY 1 cut(s) 1018
PsuI RGATCY 2 cut(s) 1774, 2588
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 9 cut(s) 183, 252, 744, 947, 1539, 1592, 1692, 2088, 2199
RsaNI GTAC 9 cut(s) 182, 251, 743, 946, 1538, 1591, 1691, 2087, 2198
RseI CAYNNNNRTG 5 cut(s) 245, 285, 326, 573, 2172
SapI GCTCTTC 1 cut(s) 672
SatI GCNGC 4 cut(s) 190, 300, 2446, 2573
Sau3AI GATC 9 cut(s) 307, 504, 594, 1321, 1349, 1597, 1667, 1774, 2588
Sau96I GGNCC 2 cut(s) 1018, 2103
SchI GAGTC 3 cut(s) 260, 965, 2267
ScrFI CCNGG 6 cut(s) 1344, 1610, 1622, 1859, 2107, 2377
SduI GDGCHC 2 cut(s) 349, 1865
SexAI ACCWGGT 1 cut(s) 1608
SfaNI GCATC 6 cut(s) 751, 979, 997, 1621, 2030, 2134
SinI GGWCC 1 cut(s) 1018
SmiMI CAYNNNNRTG 5 cut(s) 245, 285, 326, 573, 2172
SmlI CTYRAG 2 cut(s) 1202, 1756
SmoI CTYRAG 2 cut(s) 1202, 1756
SseBI AGGCCT 1 cut(s) 2375
SsiI CCGC 2 cut(s) 116, 377
SspI AATATT 1 cut(s) 1890
SspMI CTAG 7 cut(s) 426, 431, 773, 927, 1022, 1721, 2001
StuI AGGCCT 1 cut(s) 2375
StyD4I CCNGG 6 cut(s) 1342, 1608, 1620, 1857, 2105, 2375
TaaI ACNGT 7 cut(s) 124, 260, 712, 1284, 1333, 1690, 2035
TaqI TCGA 5 cut(s) 197, 951, 1072, 1431, 2300
TaqII GACCGA 1 cut(s) 461
TatI WGTACW 4 cut(s) 181, 945, 1537, 2086
TfiI GAWTC 5 cut(s) 148, 802, 842, 857, 1277
TscAI CASTG 5 cut(s) 277, 514, 1324, 2014, 2105
TseFI GTSAC 5 cut(s) 46, 65, 472, 575, 1041
TseI GCWGC 4 cut(s) 189, 299, 2445, 2572
Tsp45I GTSAC 5 cut(s) 46, 65, 472, 575, 1041
TspDTI ATGAA 7 cut(s) 102, 498, 618, 1587, 1746, 2372, 2494
TspGWI ACGGA 1 cut(s) 1060
TspRI CASTG 5 cut(s) 277, 514, 1324, 2014, 2105
Vha464I CTTAAG 1 cut(s) 1756
VneI GTGCAC 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 1018
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 8 cut(s) 823, 832, 1053, 1164, 1245, 1303, 1853, 2093
XbaI TCTAGA 1 cut(s) 926
XceI RCATGY 5 cut(s) 290, 1448, 1747, 2320, 2404
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XmiI GTMKAC 2 cut(s) 1626, 2261
XmnI GAANNNNTTC 2 cut(s) 132, 681
XspI CTAG 7 cut(s) 426, 431, 773, 927, 1022, 1721, 2001
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.