Rmu_sc0018911.1_g000011

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018911.1
OG0000294
Physical Location & Seq
Forward (+)
54929 .. 55444
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018911.1_g000011.1.cds

Sequence Viewer

Length: 516 bp
atgcaaggagtgctgggtttcaagtcttctattccagcatcaataaaccttcacagtcttacaacaagattgaggaggaagttttacatggaggatccaaatatggaagcaattcaggagttaagtgcggatgggatctgggcatatgatgcaacttgggctctagcagaagcagttcaaagagcaaggcttaaaacttctaccactagatcctcaaaagatggaactgtgcttcttagagggattttgcagactagatttaaaagtttaagtggtgaaattcaatatgtgaatgggaaactgattccatcagaaccatttgagatagttaatgttattggaaaaggtgagatcagaaggatcggatttaggccttgcaaagaagaagtaaaatccggaaaagggtcaccccagcagcaacttattcataatgggagaaatttagcttctacaattgatcttgaaagaatcatatggcctggaggttctaggaggttccaggagggaattgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

9.8

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 1 cut(s) 128
AclWI GGATC 5 cut(s) 89, 102, 143, 204, 368
AcsI RAATTY 2 cut(s) 279, 439
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 4 cut(s) 22, 179, 284, 464
AjnI CCWGG 2 cut(s) 478, 498
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
AlwI GGATC 5 cut(s) 89, 102, 143, 204, 368
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 2 cut(s) 371, 476
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 2 cut(s) 279, 439
Asp700I GAANNNNTTC 2 cut(s) 111, 174
AsuHPI GGTGA 3 cut(s) 287, 359, 399
BamHI GGATCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 427
BccI CCATC 3 cut(s) 125, 215, 316
BciT130I CCWGG 2 cut(s) 480, 500
BfaI CTAG 4 cut(s) 164, 207, 255, 489
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 2 cut(s) 480, 500
BmiI GGNNCC 2 cut(s) 96, 497
BmrFI CCNGG 2 cut(s) 480, 500
BmsI GCATC 2 cut(s) 47, 139
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 501
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 2 cut(s) 480, 500
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 2 cut(s) 13, 411
BshFI GGCC 2 cut(s) 373, 478
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 402
BsnI GGCC 2 cut(s) 373, 478
Bsp1286I GDGCHC 1 cut(s) 163
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 6 cut(s) 94, 135, 209, 351, 360, 457
BspACI CCGC 1 cut(s) 128
BspANI GGCC 2 cut(s) 373, 478
BspEI TCCGGA 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 96, 497
BspPI GGATC 5 cut(s) 89, 102, 143, 204, 368
BssMI GATC 6 cut(s) 94, 135, 209, 351, 360, 457
Bst2UI CCWGG 2 cut(s) 480, 500
Bst4CI ACNGT 2 cut(s) 56, 229
BstAPI GCANNNNNTGC 2 cut(s) 10, 149
BstDEI CTNAG 1 cut(s) 236
BstEII GGTNACC 1 cut(s) 405
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 6 cut(s) 97, 138, 212, 354, 363, 460
BstMBI GATC 6 cut(s) 94, 135, 209, 351, 360, 457
BstMWI GCNNNNNNNGC 3 cut(s) 10, 149, 158
BstNI CCWGG 2 cut(s) 480, 500
BstPI GGTNACC 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 478, 498
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 3 cut(s) 94, 135, 209
BstYI RGATCY 3 cut(s) 94, 135, 209
BsuRI GGCC 2 cut(s) 373, 478
BtsCI GGATG 1 cut(s) 136
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 161, 190, 373, 446, 478
CviKI_1 RGCY 5 cut(s) 161, 190, 373, 446, 478
DdeI CTNAG 1 cut(s) 236
DpnI GATC 6 cut(s) 96, 137, 211, 353, 362, 459
DpnII GATC 6 cut(s) 94, 135, 209, 351, 360, 457
DraI TTTAAA 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 405
EcoO65I GGTNACC 1 cut(s) 405
EcoRII CCWGG 2 cut(s) 478, 498
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 1 cut(s) 91
FaiI YATR 8 cut(s) 89, 104, 145, 147, 288, 429, 473, 475
FatI CATG 1 cut(s) 87
FauNDI CATATG 2 cut(s) 145, 473
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 4 cut(s) 164, 207, 255, 489
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 2 cut(s) 17, 415
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 373, 478
HapII CCGG 1 cut(s) 396
Hin1II CATG 1 cut(s) 91
HinfI GANTC 2 cut(s) 304, 468
HpaII CCGG 1 cut(s) 396
HphI GGTGA 3 cut(s) 287, 359, 399
Hpy188I TCNGA 3 cut(s) 313, 356, 365
Hpy188III TCNNGA 3 cut(s) 116, 396, 461
HpyAV CCTTC 2 cut(s) 59, 351
HpyCH4III ACNGT 2 cut(s) 56, 229
HpyCH4V TGCA 4 cut(s) 4, 152, 250, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 149, 158
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 91
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 6 cut(s) 94, 135, 209, 351, 360, 457
LpnPI CCDG 9 cut(s) 48, 101, 124, 409, 425, 465, 485, 492, 512
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 47, 139
MaeI CTAG 4 cut(s) 164, 207, 255, 489
MaeIII GTNAC 1 cut(s) 405
MalI GATC 6 cut(s) 96, 137, 211, 353, 362, 459
MboI GATC 6 cut(s) 94, 135, 209, 351, 360, 457
MboII GAAGA 2 cut(s) 18, 395
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 3 cut(s) 94, 135, 209
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 5 cut(s) 111, 279, 439, 453, 507
MnlI CCTC 8 cut(s) 66, 69, 85, 223, 233, 476, 486, 496
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 2 cut(s) 111, 174
MseI TTAA 5 cut(s) 122, 192, 261, 269, 330
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 480, 500
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 480, 500
MwoI GCNNNNNNNGC 3 cut(s) 10, 149, 158
NdeI CATATG 2 cut(s) 145, 473
NdeII GATC 6 cut(s) 94, 135, 209, 351, 360, 457
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 96, 497
NmuCI GTSAC 1 cut(s) 405
PceI AGGCCT 1 cut(s) 373
PdmI GAANNNNTTC 2 cut(s) 111, 174
PfeI GAWTC 2 cut(s) 304, 468
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 478, 498
PspEI GGTNACC 1 cut(s) 405
PspFI CCCAGC 2 cut(s) 13, 411
PspGI CCWGG 2 cut(s) 478, 498
PspN4I GGNNCC 2 cut(s) 96, 497
PsuI RGATCY 3 cut(s) 94, 135, 209
SaqAI TTAA 5 cut(s) 122, 192, 261, 269, 330
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 6 cut(s) 94, 135, 209, 351, 360, 457
ScrFI CCNGG 2 cut(s) 480, 500
SduI GDGCHC 1 cut(s) 163
SetI ASST 5 cut(s) 51, 349, 448, 487, 497
SfaNI GCATC 2 cut(s) 47, 139
Sse9I AATT 5 cut(s) 111, 279, 439, 453, 507
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 128
SspMI CTAG 4 cut(s) 164, 207, 255, 489
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 478, 498
TaaI ACNGT 2 cut(s) 56, 229
TasI AATT 5 cut(s) 111, 279, 439, 453, 507
TfiI GAWTC 2 cut(s) 304, 468
Tru1I TTAA 5 cut(s) 122, 192, 261, 269, 330
Tru9I TTAA 5 cut(s) 122, 192, 261, 269, 330
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 416
XapI RAATTY 2 cut(s) 279, 439
XmnI GAANNNNTTC 2 cut(s) 111, 174
XspI CTAG 4 cut(s) 164, 207, 255, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.