Rh1BG136000

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22707792 .. 22709042
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG136000.1

Sequence Viewer

Length: 1251 bp
ATGGAAGCTGACCTATTGGAAGAATTAGGAGGAGTTGAAGTCCCAGTATTGTCTCTGTCTCAACCTATTCCTTCTCCTCCTCTGACTCATAGATATCCCTTCTTCATTGAGATCAGACAGGATGAAACTTCTCAGGTTATGGGAATTGTTTCCCTTATTAAAACATACAAATGGAAGGATGTTATCCTTCTATATGAGAGCACAAAATATGCATACAACATCATTCCATCTTTGATTAGTTCTTTCCAAGAGAAAAATGTCTATATTTCATATACGAGTTCCATATCTGCCTCCTCAACAAATCAACAAATCATTGAGGAGCTCCACAAGCTCATGACATTGAAGACTAGGATAATTGTGGTGCATATGTCCCATGTGCTCATGCCTCGCCTATTCTTAAATGCCAAAAAGTTAGGAATGATGAGAGAAGGGTATGCCTGGATTATGACATCAACTAGTATGAATTTCTTGCAATCCATGGACTTATCTGTCATTGAGTCTATGCAAGGAGTGCTGGGTTTCAAGTCTCATATTCCGGCTTCAACCAACGTCCACAAACTTACTTCCAGAATCAGGAGAAAAATTTACATTGAGGAGCCTGATATGGAACTAGGTAGGGAGTTAAGTGCAGATGGAATCTGGGCATATGATGCAACTTGGGCTCTATCAGAAGCAGTTGAGAGGACAAGAATCAAAAGTTCTACTACTGGATCCTCCAAGCATGGAGTTGACCTTTTTAGAGAGATTCTGCAAACTAGATTTAAAGGTTTAGGTGGTGAAGTTGGATATCCAAATGGGAACTTGATTTCAAGTGGATTTGAGATAGTGAATGTAATCGGAACAGGGGTGAGAAGAGTTGGATTTTGGCCTTATGAAGAAGAAAAAATCATGAAAGAGTCACTCCCACTTAGTAACAGGAGGAATGCACTTTCCACAAACCATCTGGAAACAATCATATGGCCTGGAGGATCATCAACCATCTCGAGAAGTTCCAAAAGGCGACTGAGTGGAATTAAACTAAAAGTTGGGGTTCCAGTAAAAATAGGGTTCAAGGAACTTGTGAGTGTGGAGCATGATGAACAAACCAATAGAACTCATGTTACAGGCTTCTGTATAGACGTATTCGAAGCTGCAATTAGAGGACTGCCTTATAAAGTACATTATGAGTTTATTCCATTTGAGAATTCCTCGGTAGTTGGGGGGTACAACGATCTGGTTTACAAGGTTTATCTACAGGTATGCGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

416

Amino Acids

46.98

Weight (kDa)

8.58

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 13 - 280 3.6e-54 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AasI GACNNNNNNGTC 1 cut(s) 488
AclWI GGATC 3 cut(s) 705, 718, 976
AcsI RAATTY 3 cut(s) 463, 582, 1183
AfaI GTAC 2 cut(s) 1158, 1205
AfiI CCNNNNNNNGG 1 cut(s) 573
AgsI TTSAA 6 cut(s) 38, 343, 523, 543, 810, 1051
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 2 cut(s) 437, 961
AluBI AGCT 4 cut(s) 8, 322, 331, 1130
AluI AGCT 4 cut(s) 8, 322, 331, 1130
Alw21I GWGCWC 3 cut(s) 203, 324, 381
Alw26I GTCTC 3 cut(s) 57, 63, 531
AlwI GGATC 3 cut(s) 705, 718, 976
Ama87I CYCGRG 1 cut(s) 982
AoxI GGCC 2 cut(s) 866, 959
ApeKI GCWGC 1 cut(s) 1130
ApoI RAATTY 3 cut(s) 463, 582, 1183
Asp700I GAANNNNTTC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 788, 859
AsuII TTCGAA 1 cut(s) 1125
AvaI CYCGRG 1 cut(s) 982
BamHI GGATCC 1 cut(s) 710
BanII GRGCYC 2 cut(s) 324, 664
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 3 cut(s) 203, 324, 381
BbvI GCAGC 1 cut(s) 1117
BccI CCATC 4 cut(s) 235, 626, 948, 986
BciT130I CCWGG 2 cut(s) 439, 963
BcoDI GTCTC 3 cut(s) 57, 63, 531
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 4 cut(s) 348, 456, 611, 756
BfmI CTRYAG 1 cut(s) 1232
BisI GCNGC 1 cut(s) 1131
BlsI GCNGC 1 cut(s) 1132
Bme1390I CCNGG 2 cut(s) 439, 963
BmeT110I CYCGRG 1 cut(s) 982
BmiI GGNNCC 3 cut(s) 597, 712, 1032
BmrFI CCNGG 2 cut(s) 439, 963
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 640
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 1172, 1204
BpmI CTGGAG 1 cut(s) 984
Bpu14I TTCGAA 1 cut(s) 1125
BsaJI CCNNGG 2 cut(s) 477, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 573
Bse1I ACTGG 3 cut(s) 44, 712, 1034
BseBI CCWGG 2 cut(s) 439, 963
BseDI CCNNGG 2 cut(s) 477, 1188
BseGI GGATG 2 cut(s) 127, 184
BseLI CCNNNNNNNGG 1 cut(s) 573
BseMII CTCAG 2 cut(s) 146, 995
BseNI ACTGG 3 cut(s) 44, 712, 1034
BseRI GAGGAG 6 cut(s) 45, 66, 69, 283, 332, 608
BseXI GCAGC 1 cut(s) 1117
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 2 cut(s) 868, 961
BsiHKAI GWGCWC 3 cut(s) 203, 324, 381
BsiHKCI CYCGRG 1 cut(s) 982
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 26, 355
BslI CCNNNNNNNGG 1 cut(s) 573
BsmAI GTCTC 3 cut(s) 57, 63, 531
BsmFI GGGAC 2 cut(s) 26, 355
BsmI GAATGC 1 cut(s) 928
BsnI GGCC 2 cut(s) 868, 961
BsoBI CYCGRG 1 cut(s) 982
Bsp119I TTCGAA 1 cut(s) 1125
Bsp1286I GDGCHC 4 cut(s) 203, 324, 381, 664
Bsp143I GATC 4 cut(s) 111, 710, 968, 1210
Bsp19I CCATGG 1 cut(s) 477
BspANI GGCC 2 cut(s) 868, 961
BspCNI CTCAG 2 cut(s) 145, 996
BspHI TCATGA 2 cut(s) 333, 888
BspLI GGNNCC 3 cut(s) 597, 712, 1032
BspPI GGATC 3 cut(s) 705, 718, 976
BspT104I TTCGAA 1 cut(s) 1125
BsrI ACTGG 3 cut(s) 44, 712, 1034
BssECI CCNNGG 2 cut(s) 477, 1188
BssMI GATC 4 cut(s) 111, 710, 968, 1210
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 439, 963
Bst6I CTCTTC 1 cut(s) 847
BstAPI GCANNNNNTGC 2 cut(s) 511, 650
BstBI TTCGAA 1 cut(s) 1125
BstDEI CTNAG 3 cut(s) 132, 908, 1004
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 127, 184
BstKTI GATC 4 cut(s) 114, 713, 971, 1213
BstMAI GTCTC 3 cut(s) 57, 63, 531
BstMBI GATC 4 cut(s) 111, 710, 968, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 328, 511, 650, 659
BstNI CCWGG 2 cut(s) 439, 963
BstSCI CCNGG 2 cut(s) 437, 961
BstSFI CTRYAG 1 cut(s) 1232
BstV1I GCAGC 1 cut(s) 1117
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BsuRI GGCC 2 cut(s) 868, 961
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 127, 184
CciI TCATGA 2 cut(s) 333, 888
Csp6I GTAC 2 cut(s) 1157, 1204
CviAII CATG 8 cut(s) 334, 374, 382, 478, 722, 889, 1073, 1097
CviQI GTAC 2 cut(s) 1157, 1204
DdeI CTNAG 3 cut(s) 132, 908, 1004
DpnI GATC 4 cut(s) 113, 712, 970, 1212
DpnII GATC 4 cut(s) 111, 710, 968, 1210
DraI TTTAAA 1 cut(s) 763
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 847
EarI CTCTTC 1 cut(s) 847
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 2 cut(s) 324, 664
Eco32I GATATC 2 cut(s) 95, 788
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 982
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 1183
EcoRII CCWGG 2 cut(s) 437, 961
EcoRV GATATC 2 cut(s) 95, 788
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 324, 664
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 8 cut(s) 337, 377, 385, 481, 725, 892, 1076, 1100
FaqI GGGAC 2 cut(s) 26, 355
FatI CATG 8 cut(s) 333, 373, 381, 477, 721, 888, 1072, 1096
FauNDI CATATG 3 cut(s) 366, 646, 956
Fnu4HI GCNGC 1 cut(s) 1131
FokI GGATG 2 cut(s) 134, 191
FriOI GRGCYC 2 cut(s) 324, 664
Fsp4HI GCNGC 1 cut(s) 1131
FspBI CTAG 4 cut(s) 348, 456, 611, 756
GluI GCNGC 1 cut(s) 1131
GsaI CCCAGC 1 cut(s) 518
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 2 cut(s) 868, 961
HapII CCGG 1 cut(s) 536
Hin1II CATG 8 cut(s) 337, 377, 385, 481, 725, 892, 1076, 1100
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 7 cut(s) 85, 497, 570, 636, 690, 745, 896
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 788, 859
Hpy166II GTNNAC 3 cut(s) 553, 730, 1219
Hpy188I TCNGA 4 cut(s) 84, 116, 670, 839
Hpy188III TCNNGA 7 cut(s) 334, 567, 574, 889, 944, 982, 984
Hpy8I GTNNAC 3 cut(s) 553, 730, 1219
HpyAV CCTTC 5 cut(s) 81, 109, 169, 197, 422
HpyCH4IV ACGT 2 cut(s) 549, 1119
HpyCH4V TGCA 9 cut(s) 212, 364, 472, 505, 629, 653, 751, 926, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 511, 650, 659
HpyF3I CTNAG 3 cut(s) 132, 908, 1004
HpySE526I ACGT 2 cut(s) 549, 1119
Hsp92II CATG 8 cut(s) 337, 377, 385, 481, 725, 892, 1076, 1100
Kzo9I GATC 4 cut(s) 111, 710, 968, 1210
LmnI GCTCC 4 cut(s) 319, 327, 595, 1069
Lsp1109I GCAGC 1 cut(s) 1117
LweI GCATC 1 cut(s) 640
MaeI CTAG 4 cut(s) 348, 456, 611, 756
MaeII ACGT 2 cut(s) 549, 1119
MaeIII GTNAC 3 cut(s) 897, 911, 1099
MalI GATC 4 cut(s) 113, 712, 970, 1212
MboI GATC 4 cut(s) 111, 710, 968, 1210
MboII GAAGA 6 cut(s) 32, 94, 355, 864, 887, 890
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 4 cut(s) 203, 324, 381, 664
MluCI AATT 8 cut(s) 23, 144, 354, 463, 582, 1011, 1134, 1183
MlyI GAGTC 3 cut(s) 79, 506, 905
MmeI TCCRAC 2 cut(s) 763, 838
Mph1103I ATGCAT 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 148
MseI TTAA 5 cut(s) 159, 398, 623, 762, 1014
MslI CAYNNNNRTG 1 cut(s) 169
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 439, 963
Mva1269I GAATGC 1 cut(s) 928
MvaI CCWGG 2 cut(s) 439, 963
MwoI GCNNNNNNNGC 4 cut(s) 328, 511, 650, 659
NcoI CCATGG 1 cut(s) 477
NdeI CATATG 3 cut(s) 366, 646, 956
NdeII GATC 4 cut(s) 111, 710, 968, 1210
NlaIII CATG 8 cut(s) 337, 377, 385, 481, 725, 892, 1076, 1100
NlaIV GGNNCC 3 cut(s) 597, 712, 1032
NmuCI GTSAC 1 cut(s) 897
NsiI ATGCAT 1 cut(s) 214
NspV TTCGAA 1 cut(s) 1125
PaeR7I CTCGAG 1 cut(s) 982
PagI TCATGA 2 cut(s) 333, 888
PctI GAATGC 1 cut(s) 928
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 570, 636, 690, 745
PkrI GCNGC 1 cut(s) 1132
PleI GAGTC 3 cut(s) 79, 505, 904
PpsI GAGTC 3 cut(s) 79, 505, 904
PsiI TTATAA 1 cut(s) 1152
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 437, 961
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 2 cut(s) 437, 961
PspN4I GGNNCC 3 cut(s) 597, 712, 1032
PsrI GAACNNNNNNTAC 2 cut(s) 1084, 1116
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 2 cut(s) 1158, 1205
RsaNI GTAC 2 cut(s) 1157, 1204
RseI CAYNNNNRTG 1 cut(s) 169
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 5 cut(s) 159, 398, 623, 762, 1014
SatI GCNGC 1 cut(s) 1131
Sau3AI GATC 4 cut(s) 111, 710, 968, 1210
SchI GAGTC 3 cut(s) 79, 506, 905
ScrFI CCNGG 2 cut(s) 439, 963
SduI GDGCHC 4 cut(s) 203, 324, 381, 664
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 1232
Sfr274I CTCGAG 1 cut(s) 982
SfuI TTCGAA 1 cut(s) 1125
SlaI CTCGAG 1 cut(s) 982
SmiMI CAYNNNNRTG 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 982
SmoI CTYRAG 1 cut(s) 982
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 8 cut(s) 23, 144, 354, 463, 582, 1011, 1134, 1183
SspMI CTAG 4 cut(s) 348, 456, 611, 756
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 437, 961
StyI CCWWGG 1 cut(s) 477
TaiI ACGT 2 cut(s) 552, 1122
TaqI TCGA 2 cut(s) 983, 1125
TasI AATT 8 cut(s) 23, 144, 354, 463, 582, 1011, 1134, 1183
TatI WGTACW 1 cut(s) 1156
TfiI GAWTC 4 cut(s) 570, 636, 690, 745
Tru1I TTAA 5 cut(s) 159, 398, 623, 762, 1014
Tru9I TTAA 5 cut(s) 159, 398, 623, 762, 1014
TseFI GTSAC 1 cut(s) 897
TseI GCWGC 1 cut(s) 1130
Tsp45I GTSAC 1 cut(s) 897
TspDTI ATGAA 7 cut(s) 94, 138, 258, 476, 888, 905, 1092
XapI RAATTY 3 cut(s) 463, 582, 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XhoI CTCGAG 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 148
XspI CTAG 4 cut(s) 348, 456, 611, 756
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.