Rmu_sc0007655.1_g000003

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007655.1
OG0000294
Physical Location & Seq
Forward (+)
13213 .. 14099
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007655.1_g000003.1.cds

Sequence Viewer

Length: 642 bp
atgatgacagttaaacaaatgcaattgaacgccagagggaactacataggttaccagggtggttcatcattggttaccgcacatgctgtagagaacttgaatttcaaaggggctaaaccatatagttcagttgaagcatatgctgatgctttgtctagaggaagcaagcatggtggtgtttctgctattgttgacgaggtaccatacattaaggtcttccttgcaaagtattctgagggctactctatgattaaaaccgagtctactaccaatggttttggctttgctttccctaaaggctcgaaattggcacatgacatgtcaatccaagttgaaaaattgagagaagaaggaaagcttttagagatggaaaaggcctggtttcattataatgggaatcacatgtttgaggacacagcaagtcctcccaatactcttaatcttagcagctttcgtggtttattccttgttagtggggtttcttcagcttttgctctatttttgttcacaatttctccactcagagagaaatggcaacttgtgaagaaatgcagatatcttattcaggttacgctgctgaatgtatggaaatccctttctaacagagtttcaaatcaaaatgaagaaaactacgggacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

213

Amino Acids

23.79

Weight (kDa)

9.18

Isoelectric Point (pI)

18.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 263
AciI CCGC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 1 cut(s) 201
AflIII ACRYGT 2 cut(s) 318, 402
AgsI TTSAA 6 cut(s) 28, 100, 106, 134, 335, 612
AjnI CCWGG 2 cut(s) 54, 377
AluBI AGCT 3 cut(s) 358, 450, 488
AluI AGCT 3 cut(s) 358, 450, 488
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 447, 574
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 459, 561
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 56, 379
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 448, 575
BlsI GCNGC 2 cut(s) 449, 576
Bme1390I CCNGG 2 cut(s) 56, 379
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 56, 379
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
BseBI CCWGG 2 cut(s) 56, 379
BseDI CCNNGG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 225, 535
BseXI GCAGC 2 cut(s) 459, 561
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 199
BsnI GGCC 1 cut(s) 377
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 2 cut(s) 226, 534
BspLI GGNNCC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 55
Bst2UI CCWGG 2 cut(s) 56, 379
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 234, 443, 521
BstEII GGTNACC 2 cut(s) 50, 73
BstNI CCWGG 2 cut(s) 56, 379
BstNSI RCATGY 3 cut(s) 86, 322, 406
BstPI GGTNACC 2 cut(s) 50, 73
BstSCI CCNGG 2 cut(s) 54, 377
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 459, 561
BstV2I GAAGAC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 6 cut(s) 83, 170, 314, 319, 403, 639
CviJI RGCY 8 cut(s) 113, 240, 282, 300, 358, 377, 450, 488
CviKI_1 RGCY 8 cut(s) 113, 240, 282, 300, 358, 377, 450, 488
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 234, 443, 521
Eco147I AGGCCT 1 cut(s) 377
Eco32I GATATC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 468
Eco91I GGTNACC 2 cut(s) 50, 73
EcoO65I GGTNACC 2 cut(s) 50, 73
EcoRII CCWGG 2 cut(s) 54, 377
EcoRV GATATC 1 cut(s) 557
FaeI CATG 6 cut(s) 86, 173, 317, 322, 406, 642
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 6 cut(s) 82, 169, 313, 318, 402, 638
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 448, 575
Fsp4HI GCNGC 2 cut(s) 448, 575
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 448, 575
HaeIII GGCC 1 cut(s) 377
Hin1II CATG 6 cut(s) 86, 173, 317, 322, 406, 642
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 260, 397
Hpy166II GTNNAC 3 cut(s) 193, 264, 507
Hpy188I TCNGA 2 cut(s) 235, 524
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 3 cut(s) 193, 264, 507
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 22, 224, 552
HpyF3I CTNAG 3 cut(s) 234, 443, 521
Hsp92II CATG 6 cut(s) 86, 173, 317, 322, 406, 642
KpnI GGTACC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 41, 46, 68, 364, 391, 551
Lsp1109I GCAGC 2 cut(s) 459, 561
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 50, 73, 568
MboII GAAGA 5 cut(s) 208, 359, 474, 556, 635
MfeI CAATTG 1 cut(s) 23
MluCI AATT 5 cut(s) 23, 100, 305, 338, 510
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 6 cut(s) 29, 152, 190, 229, 403, 435
MseI TTAA 4 cut(s) 12, 210, 252, 438
MslI CAYNNNNRTG 2 cut(s) 174, 390
MspR9I CCNGG 2 cut(s) 56, 379
MunI CAATTG 1 cut(s) 23
MvaI CCWGG 2 cut(s) 56, 379
NdeI CATATG 1 cut(s) 139
NlaIII CATG 6 cut(s) 86, 173, 317, 322, 406, 642
NlaIV GGNNCC 1 cut(s) 201
NspI RCATGY 3 cut(s) 86, 322, 406
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 2 cut(s) 318, 402
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 2 cut(s) 449, 576
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PscI ACATGT 2 cut(s) 318, 402
PsiI TTATAA 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 54, 377
PspEI GGTNACC 2 cut(s) 50, 73
PspGI CCWGG 2 cut(s) 54, 377
PspN4I GGNNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 2 cut(s) 174, 390
SaqAI TTAA 4 cut(s) 12, 210, 252, 438
SatI GCNGC 2 cut(s) 448, 575
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 56, 379
SetI ASST 7 cut(s) 52, 201, 216, 360, 452, 490, 570
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 174, 390
Sse9I AATT 5 cut(s) 23, 100, 305, 338, 510
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 156
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 54, 377
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 302
TasI AATT 5 cut(s) 23, 100, 305, 338, 510
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 4 cut(s) 12, 210, 252, 438
Tru9I TTAA 4 cut(s) 12, 210, 252, 438
TseI GCWGC 2 cut(s) 447, 574
TspDTI ATGAA 3 cut(s) 54, 374, 636
XapI RAATTY 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 155
XceI RCATGY 3 cut(s) 86, 322, 406
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.