Rh1DG169500

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000294
Physical Location & Seq
Forward (+)
34874482 .. 34878575
4094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG169500.1

Sequence Viewer

Length: 828 bp
ATGTATGGAGTGTCACTCTGCATATTATTTTGCTTCCTGGGTCTCTTGTGCGCTGAAGTTGATGAAAAAGTGCATTACAACAGTCCTAGTGTTGTGGACGAGGTTGACGTTGGTGTGATTCTTGATATGGGATCAAGGGAAGCAAAACTTGTTCTCAGTTGCATTTCAATGGCCCTGTCTGATTTCTACAATCTGCACAACAACTACAGCACAAGAGTAGTTCTCCACAGTAGGGATTCCCATGGAAAAGCTCTACATGCTCTATCAGCTGCTGTTAGTCTGTTGGATAACATCAAAGTGGAAGCAATAATTAGTGCAGAACCAAGAATGGAAGCTGACCTATTGGAAGAATTAGGAGGAGTTGAAGTCCCAGTATTGTCTCTGTCTCAACCTATTCCTTCTCCTCCTCTGACTCATAGATATCCCTTCTTCATTGAGATCAGACAGGATGAAACTTCTCAGATTTTTCCTAAAGGTTCTAAATTAGTCCGTGACATGTCGAGGCAAATTGAAATTTTAAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCAGATCTCAGATGCAGTGAATAGTCCTAATCCTGGTACTCTTAACCTCAGCAGCTTTCTAGGTTTATTCCTTGTTAGTGGCGTTTCTTCAGTTGCTGCTCTTATATTATTCTTCATTTTGTCCCTCAAAGATAGATGGCATGTCCTAAAGATAAGCACAGCTAGATCCCTGGGTAGAGGACAGCTGATGCAACTTATAAGAAGGTCCCTTTCTAACAAAGTATCCAATGCAGATGAACACATCAATACACAGATAGTGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

275

Amino Acids

30.49

Weight (kDa)

5.63

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 52 - 155 8.1e-08 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AclWI GGATC 2 cut(s) 139, 720
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 2 cut(s) 75, 633
AfaI GTAC 1 cut(s) 598
AfiI CCNNNNNNNGG 2 cut(s) 232, 593
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 3 cut(s) 168, 365, 512
AjnI CCWGG 4 cut(s) 36, 554, 592, 729
AluBI AGCT 7 cut(s) 251, 269, 335, 535, 615, 722, 745
AluI AGCT 7 cut(s) 251, 269, 335, 535, 615, 722, 745
Alw26I GTCTC 3 cut(s) 47, 384, 390
AlwI GGATC 2 cut(s) 139, 720
AlwNI CAGNNNCTG 2 cut(s) 272, 656
AoxI GGCC 2 cut(s) 171, 552
ApeKI GCWGC 3 cut(s) 269, 612, 656
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 172, 765
AvaII GGWCC 1 cut(s) 765
BbvCI CCTCAGC 1 cut(s) 608
BbvI GCAGC 3 cut(s) 256, 624, 643
BccI CCATC 2 cut(s) 538, 690
BciT130I CCWGG 4 cut(s) 38, 556, 594, 731
BciVI GTATCC 1 cut(s) 793
BcoDI GTCTC 3 cut(s) 47, 384, 390
BfaI CTAG 3 cut(s) 87, 620, 723
BfmI CTRYAG 1 cut(s) 205
BfuI GTATCC 1 cut(s) 793
BglII AGATCT 1 cut(s) 564
BisI GCNGC 3 cut(s) 270, 613, 657
BlsI GCNGC 3 cut(s) 271, 614, 658
Bme1390I CCNGG 4 cut(s) 38, 556, 594, 731
Bme18I GGWCC 1 cut(s) 765
BmgT120I GGNCC 2 cut(s) 172, 765
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 4 cut(s) 38, 556, 594, 731
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 562, 738
BmuI ACTGGG 1 cut(s) 365
BplI GAGNNNNNCTC 3 cut(s) 32, 207, 239
Bpu10I CCTNAGC 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 4 cut(s) 37, 241, 729, 730
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 593
Bse1I ACTGG 1 cut(s) 371
BseBI CCWGG 4 cut(s) 38, 556, 594, 731
BseDI CCNNGG 4 cut(s) 37, 241, 729, 730
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 232, 593
BseMII CTCAG 4 cut(s) 169, 473, 582, 622
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 3 cut(s) 372, 393, 396
BseXI GCAGC 3 cut(s) 256, 624, 643
BsgI GTGCAG 2 cut(s) 179, 336
BshFI GGCC 2 cut(s) 173, 554
BslFI GGGAC 3 cut(s) 353, 667, 751
BslI CCNNNNNNNGG 2 cut(s) 232, 593
BsmAI GTCTC 3 cut(s) 47, 384, 390
BsmFI GGGAC 3 cut(s) 353, 667, 751
BsnI GGCC 2 cut(s) 173, 554
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 4 cut(s) 131, 438, 564, 725
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 2 cut(s) 173, 554
BspCNI CTCAG 4 cut(s) 168, 472, 581, 621
BspLI GGNNCC 1 cut(s) 767
BspPI GGATC 2 cut(s) 139, 720
BspTNI GGTCTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 4 cut(s) 37, 241, 729, 730
BssMI GATC 4 cut(s) 131, 438, 564, 725
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 4 cut(s) 38, 556, 594, 731
Bst4CI ACNGT 2 cut(s) 83, 230
BstDEI CTNAG 4 cut(s) 155, 459, 568, 608
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 134, 441, 567, 728
BstMAI GTCTC 3 cut(s) 47, 384, 390
BstMBI GATC 4 cut(s) 131, 438, 564, 725
BstMWI GCNNNNNNNGC 2 cut(s) 257, 266
BstNI CCWGG 4 cut(s) 38, 556, 594, 731
BstNSI RCATGY 3 cut(s) 260, 499, 704
BstSCI CCNGG 4 cut(s) 36, 554, 592, 729
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 3 cut(s) 256, 624, 643
BstX2I RGATCY 2 cut(s) 564, 725
BstYI RGATCY 2 cut(s) 564, 725
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 173, 554
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
CaiI CAGNNNCTG 2 cut(s) 272, 656
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 172, 765
Csp6I GTAC 1 cut(s) 597
CviAII CATG 4 cut(s) 242, 257, 496, 701
CviJI RGCY 9 cut(s) 173, 251, 269, 335, 535, 554, 615, 722, 745
CviKI_1 RGCY 9 cut(s) 173, 251, 269, 335, 535, 554, 615, 722, 745
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 4 cut(s) 155, 459, 568, 608
DpnI GATC 4 cut(s) 133, 440, 566, 727
DpnII GATC 4 cut(s) 131, 438, 564, 725
Eco130I CCWWGG 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 765
Eco57I CTGAAG 2 cut(s) 75, 633
EcoO109I RGGNCCY 1 cut(s) 765
EcoRII CCWGG 4 cut(s) 36, 554, 592, 729
EcoRV GATATC 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 4 cut(s) 245, 260, 499, 704
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 519, 551
FaqI GGGAC 3 cut(s) 353, 667, 751
FatI CATG 4 cut(s) 241, 256, 495, 700
Fnu4HI GCNGC 3 cut(s) 270, 613, 657
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 3 cut(s) 270, 613, 657
FspBI CTAG 3 cut(s) 87, 620, 723
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 270, 613, 657
HaeIII GGCC 2 cut(s) 173, 554
HhaI GCGC 1 cut(s) 53
Hin1II CATG 4 cut(s) 245, 260, 499, 704
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 118, 236, 412, 821
Hpy166II GTNNAC 2 cut(s) 97, 106
Hpy188I TCNGA 6 cut(s) 181, 411, 443, 462, 564, 571
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 97, 106
HpyAV CCTTC 4 cut(s) 408, 436, 521, 756
HpyCH4III ACNGT 2 cut(s) 83, 230
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 8 cut(s) 21, 73, 162, 196, 317, 575, 751, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 266
HpyF3I CTNAG 4 cut(s) 155, 459, 568, 608
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 245, 260, 499, 704
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 4 cut(s) 131, 438, 564, 725
Lsp1109I GCAGC 3 cut(s) 256, 624, 643
LweI GCATC 2 cut(s) 562, 738
MaeI CTAG 3 cut(s) 87, 620, 723
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 12, 491
MalI GATC 4 cut(s) 133, 440, 566, 727
MboI GATC 4 cut(s) 131, 438, 564, 725
MboII GAAGA 5 cut(s) 359, 421, 536, 639, 664
MflI RGATCY 2 cut(s) 564, 725
MluCI AATT 5 cut(s) 309, 350, 482, 507, 513
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 8 cut(s) 94, 350, 414, 417, 495, 617, 695, 731
MseI TTAA 2 cut(s) 518, 603
MslI CAYNNNNRTG 2 cut(s) 167, 296
MspA1I CMGCKG 2 cut(s) 269, 745
MspR9I CCNGG 4 cut(s) 38, 556, 594, 731
MvaI CCWGG 4 cut(s) 38, 556, 594, 731
MwoI GCNNNNNNNGC 2 cut(s) 257, 266
NcoI CCATGG 1 cut(s) 241
NdeII GATC 4 cut(s) 131, 438, 564, 725
NlaIII CATG 4 cut(s) 245, 260, 499, 704
NlaIV GGNNCC 1 cut(s) 767
NmuCI GTSAC 2 cut(s) 12, 491
NspI RCATGY 3 cut(s) 260, 499, 704
PasI CCCWGGG 1 cut(s) 730
PceI AGGCCT 1 cut(s) 554
PciI ACATGT 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 3 cut(s) 118, 236, 821
PkrI GCNGC 3 cut(s) 271, 614, 658
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 765
PscI ACATGT 1 cut(s) 495
PsiI TTATAA 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 765
Psp6I CCWGG 4 cut(s) 36, 554, 592, 729
PspGI CCWGG 4 cut(s) 36, 554, 592, 729
PspN4I GGNNCC 1 cut(s) 767
PspPI GGNCC 2 cut(s) 172, 765
PspPPI RGGWCCY 1 cut(s) 765
PstNI CAGNNNCTG 2 cut(s) 272, 656
PsuI RGATCY 2 cut(s) 564, 725
PvuII CAGCTG 2 cut(s) 269, 745
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 2 cut(s) 167, 296
SaqAI TTAA 2 cut(s) 518, 603
SatI GCNGC 3 cut(s) 270, 613, 657
Sau3AI GATC 4 cut(s) 131, 438, 564, 725
Sau96I GGNCC 2 cut(s) 172, 765
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 4 cut(s) 38, 556, 594, 731
SfaNI GCATC 2 cut(s) 562, 738
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 765
SmiMI CAYNNNNRTG 2 cut(s) 167, 296
Sse9I AATT 5 cut(s) 309, 350, 482, 507, 513
SseBI AGGCCT 1 cut(s) 554
SspMI CTAG 3 cut(s) 87, 620, 723
StuI AGGCCT 1 cut(s) 554
StyD4I CCNGG 4 cut(s) 36, 554, 592, 729
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 83, 230
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 500
TasI AATT 5 cut(s) 309, 350, 482, 507, 513
TfiI GAWTC 3 cut(s) 118, 236, 821
Tru1I TTAA 2 cut(s) 518, 603
Tru9I TTAA 2 cut(s) 518, 603
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 2 cut(s) 12, 491
TseI GCWGC 3 cut(s) 269, 612, 656
Tsp45I GTSAC 2 cut(s) 12, 491
TspDTI ATGAA 6 cut(s) 78, 421, 465, 664, 810, 813
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 765
XapI RAATTY 1 cut(s) 513
XceI RCATGY 3 cut(s) 260, 499, 704
XspI CTAG 3 cut(s) 87, 620, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.