Rh1AG169200

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000294
Physical Location & Seq
Forward (+)
32176417 .. 32179669
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG169200.1

Sequence Viewer

Length: 996 bp
ATGGAACTAGGTAGGGAGTTAAGTGCAGATGGAATCTGGGCATATGATGCAACTTGGGCTCTATCAGAAGCAGTTGAGAGGACAAGAATCAAAAGTTCTACTACTGGATCCTCCAAGCATGGAGTTGACCTTGTTAGAGGGATTCTGCAAACTAGATTTAAAGGTTTAAGTGGTGAAGTTCGATATCCAAATGGGAGCTTGATTTCAAGTGGATTTGAGATAGTGAACGTAATCAGAACAGGGGTCAGAAGAGTTGGATTTTGGCGTTATGAAGAAGAAAAAATCACGAAAGAGTCACTCCCACTTAGTAACAGAAGGAATGAACTTTCCACAAACCATCTGGAAACAATCATATGGCCTGGAGGATCATCAACCATCGTGAGAAGTTCCAAGAGGCGACTGAGTGGAATTAAACTAAAAGTTGGGGTTCCAGTAAAAATAGGGTTCAAGGAACTTGTGCGTGTGGAGCATGATCAACAAACCAATAGAACTCATGTTACAGGCTTCTGTATAGACGTATTCGAAGCTGCAATTAGAGGATTGCCTTATAAAGTACATTATGAGTTTATTCCATTTGAGGATTCCGTGTTAGTTGGGGGGTACAACGGTCTAGTTCACAAGGTTTATCTACAGGTTTTTCCTAAAGGTTCTAAATTAGTCCGTGACATGTCGAGGCAAATTGAAATTTTAAGAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCAGATCTCAGATGCAGTGAATAGTCCTAATCCCGGTACTCTTAACCTCAGCAGCTTTCTAGGTTTATTCCTTGTTACTGGCGTTTCTTCAGCTGCTGCTCTTATATTATTCTTCATTTTGTCCCACAAAGATAGATGGCATGTCCTAAAGATTAGCACAGCTAGATCCCTGGGTAGAGGACAGCTGATGCAACTTATAAGAAGGTCCCTTTCTAAAAAAGTATCCAATGCAGATGAACACATCAATACACAGATAGTGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

331

Amino Acids

37.15

Weight (kDa)

9.83

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 9 - 79 1.3e-11 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 549, 926
AclWI GGATC 4 cut(s) 102, 115, 373, 888
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 3 cut(s) 555, 602, 766
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 3 cut(s) 207, 448, 683
AjnI CCWGG 3 cut(s) 358, 722, 897
AluBI AGCT 7 cut(s) 198, 527, 703, 783, 821, 890, 913
AluI AGCT 7 cut(s) 198, 527, 703, 783, 821, 890, 913
AlwI GGATC 4 cut(s) 102, 115, 373, 888
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 2 cut(s) 356, 720
ApeKI GCWGC 4 cut(s) 527, 780, 821, 824
ApoI RAATTY 1 cut(s) 684
AspS9I GGNCC 1 cut(s) 933
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 522
AvaII GGWCC 1 cut(s) 933
BaeI ACNNNNGTAYC 2 cut(s) 592, 625
BamHI GGATCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 4 cut(s) 514, 792, 808, 811
BccI CCATC 5 cut(s) 23, 345, 383, 706, 858
BciT130I CCWGG 3 cut(s) 360, 724, 899
BciVI GTATCC 1 cut(s) 961
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 762
BfaI CTAG 5 cut(s) 8, 153, 611, 788, 891
BfmI CTRYAG 1 cut(s) 629
BfuI GTATCC 1 cut(s) 961
BglII AGATCT 1 cut(s) 732
BisI GCNGC 4 cut(s) 528, 781, 822, 825
BlsI GCNGC 4 cut(s) 529, 782, 823, 826
Bme1390I CCNGG 4 cut(s) 360, 724, 762, 899
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 1 cut(s) 933
BmiI GGNNCC 3 cut(s) 109, 429, 935
BmrFI CCNGG 4 cut(s) 360, 724, 762, 899
BmsI GCATC 3 cut(s) 37, 730, 906
BpmI CTGGAG 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 776
Bpu14I TTCGAA 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 897, 898
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 3 cut(s) 109, 431, 811
BseBI CCWGG 3 cut(s) 360, 724, 899
BseDI CCNNGG 2 cut(s) 897, 898
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMII CTCAG 3 cut(s) 392, 750, 790
BseNI ACTGG 3 cut(s) 109, 431, 811
BseXI GCAGC 4 cut(s) 514, 792, 808, 811
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 2 cut(s) 358, 722
BsiSI CCGG 1 cut(s) 762
BslFI GGGAC 2 cut(s) 835, 919
BslI CCNNNNNNNGG 1 cut(s) 761
BsmFI GGGAC 2 cut(s) 835, 919
BsnI GGCC 2 cut(s) 358, 722
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 107, 365, 472, 732, 893
BspANI GGCC 2 cut(s) 358, 722
BspCNI CTCAG 3 cut(s) 393, 749, 789
BspLI GGNNCC 3 cut(s) 109, 429, 935
BspPI GGATC 4 cut(s) 102, 115, 373, 888
BspT104I TTCGAA 1 cut(s) 522
BsrI ACTGG 3 cut(s) 109, 431, 811
BssECI CCNNGG 2 cut(s) 897, 898
BssMI GATC 5 cut(s) 107, 365, 472, 732, 893
Bst2UI CCWGG 3 cut(s) 360, 724, 899
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 522
BstDEI CTNAG 4 cut(s) 305, 401, 736, 776
BstKTI GATC 5 cut(s) 110, 368, 475, 735, 896
BstMBI GATC 5 cut(s) 107, 365, 472, 732, 893
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 466
BstNI CCWGG 3 cut(s) 360, 724, 899
BstNSI RCATGY 2 cut(s) 670, 872
BstSCI CCNGG 4 cut(s) 358, 722, 760, 897
BstSFI CTRYAG 1 cut(s) 629
BstV1I GCAGC 4 cut(s) 514, 792, 808, 811
BstX2I RGATCY 3 cut(s) 107, 732, 893
BstYI RGATCY 3 cut(s) 107, 732, 893
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 2 cut(s) 358, 722
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 1 cut(s) 750
CaiI CAGNNNCTG 1 cut(s) 824
Cfr13I GGNCC 1 cut(s) 933
Csp6I GTAC 3 cut(s) 554, 601, 765
CviAII CATG 5 cut(s) 119, 470, 494, 667, 869
CviQI GTAC 3 cut(s) 554, 601, 765
DdeI CTNAG 4 cut(s) 305, 401, 736, 776
DpnI GATC 5 cut(s) 109, 367, 474, 734, 895
DpnII GATC 5 cut(s) 107, 365, 472, 732, 893
DraI TTTAAA 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 933
Eco57I CTGAAG 1 cut(s) 801
EcoO109I RGGNCCY 1 cut(s) 933
EcoRII CCWGG 3 cut(s) 358, 722, 897
EcoRV GATATC 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 5 cut(s) 122, 473, 497, 670, 872
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 2 cut(s) 835, 919
FatI CATG 5 cut(s) 118, 469, 493, 666, 868
FauNDI CATATG 2 cut(s) 43, 353
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 4 cut(s) 528, 781, 822, 825
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 4 cut(s) 528, 781, 822, 825
FspBI CTAG 5 cut(s) 8, 153, 611, 788, 891
GluI GCNGC 4 cut(s) 528, 781, 822, 825
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 2 cut(s) 358, 722
HapII CCGG 1 cut(s) 762
Hin1II CATG 5 cut(s) 122, 473, 497, 670, 872
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 6 cut(s) 33, 87, 142, 293, 581, 989
HpaII CCGG 1 cut(s) 762
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 127, 226, 616
Hpy188I TCNGA 5 cut(s) 67, 236, 248, 732, 739
Hpy188III TCNNGA 3 cut(s) 286, 341, 379
Hpy8I GTNNAC 3 cut(s) 127, 226, 616
HpyAV CCTTC 3 cut(s) 309, 689, 924
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 2 cut(s) 228, 516
HpyCH4V TGCA 7 cut(s) 26, 50, 148, 530, 743, 919, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 466
HpyF3I CTNAG 4 cut(s) 305, 401, 736, 776
HpySE526I ACGT 2 cut(s) 228, 516
Hsp92II CATG 5 cut(s) 122, 473, 497, 670, 872
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 107, 365, 472, 732, 893
LmnI GCTCC 2 cut(s) 195, 466
Lsp1109I GCAGC 4 cut(s) 514, 792, 808, 811
LweI GCATC 3 cut(s) 37, 730, 906
MaeI CTAG 5 cut(s) 8, 153, 611, 788, 891
MaeII ACGT 2 cut(s) 228, 516
MaeIII GTNAC 5 cut(s) 294, 308, 496, 662, 802
MalI GATC 5 cut(s) 109, 367, 474, 734, 895
MboI GATC 5 cut(s) 107, 365, 472, 732, 893
MboII GAAGA 5 cut(s) 261, 284, 287, 807, 832
MflI RGATCY 3 cut(s) 107, 732, 893
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 5 cut(s) 408, 531, 653, 678, 684
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 235
MseI TTAA 6 cut(s) 20, 159, 167, 411, 689, 771
MspA1I CMGCKG 2 cut(s) 821, 913
MspI CCGG 1 cut(s) 762
MspR9I CCNGG 4 cut(s) 360, 724, 762, 899
MvaI CCWGG 3 cut(s) 360, 724, 899
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 466
NciI CCSGG 1 cut(s) 762
NdeI CATATG 2 cut(s) 43, 353
NdeII GATC 5 cut(s) 107, 365, 472, 732, 893
NlaIII CATG 5 cut(s) 122, 473, 497, 670, 872
NlaIV GGNNCC 3 cut(s) 109, 429, 935
NmuCI GTSAC 2 cut(s) 294, 662
NspI RCATGY 2 cut(s) 670, 872
NspV TTCGAA 1 cut(s) 522
PasI CCCWGGG 1 cut(s) 898
PceI AGGCCT 1 cut(s) 722
PciI ACATGT 1 cut(s) 666
PfeI GAWTC 5 cut(s) 33, 87, 142, 581, 989
PkrI GCNGC 4 cut(s) 529, 782, 823, 826
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 1 cut(s) 933
PscI ACATGT 1 cut(s) 666
PsiI TTATAA 2 cut(s) 549, 926
Psp5II RGGWCCY 1 cut(s) 933
Psp6I CCWGG 3 cut(s) 358, 722, 897
PspGI CCWGG 3 cut(s) 358, 722, 897
PspN4I GGNNCC 3 cut(s) 109, 429, 935
PspPI GGNCC 1 cut(s) 933
PspPPI RGGWCCY 1 cut(s) 933
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 3 cut(s) 107, 732, 893
PvuII CAGCTG 2 cut(s) 821, 913
RsaI GTAC 3 cut(s) 555, 602, 766
RsaNI GTAC 3 cut(s) 554, 601, 765
SaqAI TTAA 6 cut(s) 20, 159, 167, 411, 689, 771
SatI GCNGC 4 cut(s) 528, 781, 822, 825
Sau3AI GATC 5 cut(s) 107, 365, 472, 732, 893
Sau96I GGNCC 1 cut(s) 933
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 4 cut(s) 360, 724, 762, 899
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 3 cut(s) 37, 730, 906
SfcI CTRYAG 1 cut(s) 629
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 1 cut(s) 933
Sse9I AATT 5 cut(s) 408, 531, 653, 678, 684
SseBI AGGCCT 1 cut(s) 722
SspMI CTAG 5 cut(s) 8, 153, 611, 788, 891
StuI AGGCCT 1 cut(s) 722
StyD4I CCNGG 4 cut(s) 358, 722, 760, 897
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 2 cut(s) 231, 519
TaqI TCGA 3 cut(s) 181, 522, 671
TasI AATT 5 cut(s) 408, 531, 653, 678, 684
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 5 cut(s) 33, 87, 142, 581, 989
Tru1I TTAA 6 cut(s) 20, 159, 167, 411, 689, 771
Tru9I TTAA 6 cut(s) 20, 159, 167, 411, 689, 771
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 2 cut(s) 294, 662
TseI GCWGC 4 cut(s) 527, 780, 821, 824
Tsp45I GTSAC 2 cut(s) 294, 662
TspDTI ATGAA 5 cut(s) 285, 336, 832, 978, 981
TspGWI ACGGA 2 cut(s) 574, 650
TspRI CASTG 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 933
XapI RAATTY 1 cut(s) 684
XceI RCATGY 2 cut(s) 670, 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 5 cut(s) 8, 153, 611, 788, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.