Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000294

Physical Location & Seq

Genomic Coordinates Forward (+)

22252837 .. 22255082

Gene Structure 2246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG132900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTGGTACCAAATGCCAAGGAAAACATGTGGATTTTCTTTAAACCACTTTCAACATATCTTTGGTTAACAAGTGCTGCTTTCTTTATCCTAACCAGTTTTGTTGTTTGGATCATTGAGCGTCCTACTAACAAAGAATTCCGGGGCACAGTAGAGGAGCAAATCGGAACACTTTTCTGGTTCTCCTTTTCTACTCTTGTGTTTGCTTATACGGAAAAGTTGTCAAATAATTTGGCAAAGTTTGTAGTGATCATATGGGTGTTTGTAGTGCTTATATTGTCATCAAGTTATACTGCAACTTTAGCATCAATGATGACGGTCAAACAGATGGAGTTAAACTCGAGAGGGAACTATATAGGTTATCAATCGGGTTCATTAATTAGGACTTTAGGAGTTCTAGTGAACTTAAATTTGAAAGCAGCAAAGTCATATCGTTCAGAAGAAGAATATATTGATGCTCTATCCAAAGGAAGCAAGAATGGTGGAGTTTCTGGGATTATTGACGAGGTTCCGTACATCAATATCTTCCTTGCAAAGTATTCTGCTGACTACTCGATGATTAAAACCAGGGCTATCACCAATGGTTTTGCCTTTGTTTTCCCTAAAAGTTCGAAATTGGTTCATGATGTGTCAAGGCAAATTGAACGTCTGAGACAGGAAGAAAAGCTTCTAGAGATGGAAAAGACCTGGTTTCGTGAAAAAACAACCCTCATGTCTGATGAGGATATGACCCAGAGTGATCCCAATACGATTGACCTCTATGACTTTCGTGGTCTGTTCCTTATTAGTGGGGCTTCTTTAGCTATTTCTCTTTTCTTCTTCGTAGTTTTATCCACTAGATTTAGGAATCTGTTTCAAGGACTAATGCAGCTGATTCGTATAGAACTGCAGCGTTTCAGGACGTTCTTCTCCTACATAGTATGCAATGGAATTGAGCAAAACTGCATGCAAGTTCCTACGCAAGTCATTGTACATGCTGTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005267 GO:0005272 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006816 GO:0006873 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0019722 GO:0019725 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0033993 GO:0034220 GO:0035556 GO:0035725 GO:0038023 GO:0042221 GO:0042592 GO:0043200 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

328

Amino Acids

37.75

Weight (kDa)

8.9

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	19 - 265	1.7e-28	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca	FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica	MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica	Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis	pycom02g20100 pycom07g06420
rosa_chinensis	RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata	RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora	Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa	Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha	Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana	Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	7
AclWI	GGATC	2 cut(s)	119, 734
AcsI	RAATTY	2 cut(s)	137, 409
AfaI	GTAC	3 cut(s)	9, 515, 972
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	54, 415, 644, 857
AjnI	CCWGG	2 cut(s)	566, 686
AluBI	AGCT	3 cut(s)	667, 803, 871
AluI	AGCT	3 cut(s)	667, 803, 871
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	2 cut(s)	119, 734
Ama87I	CYCGRG	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	77, 419, 868, 889
ApoI	RAATTY	2 cut(s)	137, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
AseI	ATTAAT	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	666
Asp718I	GGTACC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	568
AsuII	TTCGAA	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	7
BbvI	GCAGC	4 cut(s)	64, 431, 880, 901
BccI	CCATC	2 cut(s)	322, 670
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	2 cut(s)	568, 688
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	3 cut(s)	398, 671, 837
BfmI	CTRYAG	1 cut(s)	887
BisI	GCNGC	4 cut(s)	78, 420, 869, 890
BlsI	GCNGC	4 cut(s)	79, 421, 870, 891
Bme1390I	CCNGG	3 cut(s)	143, 568, 688
BmeT110I	CYCGRG	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	9, 510
BmrFI	CCNGG	3 cut(s)	143, 568, 688
BmsI	GCATC	2 cut(s)	314, 445
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
Bpu14I	TTCGAA	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	18, 142, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	931
BseBI	CCWGG	2 cut(s)	568, 688
BseDI	CCNNGG	3 cut(s)	18, 142, 567
BseMI	GCAATG	1 cut(s)	931
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	64, 431, 880, 901
BshNI	GGYRCC	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	970
Bsp143I	GATC	3 cut(s)	111, 249, 739
BspCNI	CTCAG	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	9, 510
BspMAI	CTGCAG	1 cut(s)	891
BspPI	GGATC	2 cut(s)	119, 734
BspT104I	TTCGAA	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	931
BsrGI	TGTACA	1 cut(s)	970
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	18, 142, 567
BssMI	GATC	3 cut(s)	111, 249, 739
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	568, 688
Bst4CI	ACNGT	2 cut(s)	151, 319
BstAUI	TGTACA	1 cut(s)	970
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	947
BstDEI	CTNAG	1 cut(s)	650
BstKTI	GATC	3 cut(s)	114, 252, 742
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	3 cut(s)	111, 249, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 800
BstNI	CCWGG	2 cut(s)	568, 688
BstNSI	RCATGY	3 cut(s)	31, 949, 977
BstSCI	CCNGG	3 cut(s)	141, 566, 686
BstSFI	CTRYAG	1 cut(s)	887
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	64, 431, 880, 901
Cac8I	GCNNGC	1 cut(s)	947
CciI	TCATGA	1 cut(s)	622
CseI	GACGC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	8, 514, 971
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	5 cut(s)	28, 623, 712, 946, 974
CviJI	RGCY	5 cut(s)	572, 667, 794, 803, 871
CviKI_1	RGCY	5 cut(s)	572, 667, 794, 803, 871
CviQI	GTAC	3 cut(s)	8, 514, 971
DdeI	CTNAG	1 cut(s)	650
DpnI	GATC	3 cut(s)	113, 251, 741
DpnII	GATC	3 cut(s)	111, 249, 739
DraI	TTTAAA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	566, 686
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	5 cut(s)	31, 626, 715, 949, 977
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 651, 683
FatI	CATG	5 cut(s)	27, 622, 711, 945, 973
FauNDI	CATATG	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	78, 420, 869, 890
Fsp4HI	GCNGC	4 cut(s)	78, 420, 869, 890
FspBI	CTAG	3 cut(s)	398, 671, 837
GluI	GCNGC	4 cut(s)	78, 420, 869, 890
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	5 cut(s)	31, 626, 715, 949, 977
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	2 cut(s)	847, 874
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	69, 403
Hpy188I	TCNGA	4 cut(s)	167, 439, 651, 718
Hpy188III	TCNNGA	5 cut(s)	342, 623, 671, 695, 898
Hpy8I	GTNNAC	2 cut(s)	69, 403
HpyCH4III	ACNGT	2 cut(s)	151, 319
HpyCH4IV	ACGT	2 cut(s)	646, 902
HpyCH4V	TGCA	7 cut(s)	296, 533, 868, 889, 924, 945, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 800
HpyF3I	CTNAG	1 cut(s)	650
HpySE526I	ACGT	2 cut(s)	646, 902
Hsp92II	CATG	5 cut(s)	31, 626, 715, 949, 977
KpnI	GGTACC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	249
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	111, 249, 739
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	64, 431, 880, 901
LweI	GCATC	2 cut(s)	314, 445
MabI	ACCWGGT	1 cut(s)	686
MaeI	CTAG	3 cut(s)	398, 671, 837
MaeII	ACGT	2 cut(s)	646, 902
MalI	GATC	3 cut(s)	113, 251, 741
MboI	GATC	3 cut(s)	111, 249, 739
MboII	GAAGA	7 cut(s)	452, 455, 517, 671, 808, 811, 898
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	7 cut(s)	137, 229, 378, 409, 614, 639, 930
MnlI	CCTC	6 cut(s)	148, 338, 499, 715, 719, 767
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	7 cut(s)	42, 68, 335, 377, 407, 561, 985
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	143, 568, 688
MvaI	CCWGG	2 cut(s)	568, 688
MwoI	GCNNNNNNNGC	2 cut(s)	302, 800
NciI	CCSGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	254
NdeII	GATC	3 cut(s)	111, 249, 739
NlaIII	CATG	5 cut(s)	31, 626, 715, 949, 977
NlaIV	GGNNCC	2 cut(s)	9, 510
NspI	RCATGY	3 cut(s)	31, 949, 977
NspV	TTCGAA	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	949
PaeR7I	CTCGAG	1 cut(s)	340
PagI	TCATGA	1 cut(s)	622
PciI	ACATGT	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	847, 874
PkrI	GCNGC	4 cut(s)	79, 421, 870, 891
PscI	ACATGT	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	566, 686
PspGI	CCWGG	2 cut(s)	566, 686
PspN4I	GGNNCC	2 cut(s)	9, 510
PstI	CTGCAG	1 cut(s)	891
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	3 cut(s)	9, 515, 972
RsaNI	GTAC	3 cut(s)	8, 514, 971
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	7 cut(s)	42, 68, 335, 377, 407, 561, 985
SatI	GCNGC	4 cut(s)	78, 420, 869, 890
Sau3AI	GATC	3 cut(s)	111, 249, 739
ScrFI	CCNGG	3 cut(s)	143, 568, 688
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	361, 510, 649, 669, 689, 759, 805, 873, 905
SexAI	ACCWGGT	1 cut(s)	686
SfaNI	GCATC	2 cut(s)	314, 445
SfcI	CTRYAG	1 cut(s)	887
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SphI	GCATGC	1 cut(s)	949
Sse9I	AATT	7 cut(s)	137, 229, 378, 409, 614, 639, 930
SspMI	CTAG	3 cut(s)	398, 671, 837
StyD4I	CCNGG	3 cut(s)	141, 566, 686
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	151, 319
TaiI	ACGT	2 cut(s)	649, 905
TaqI	TCGA	3 cut(s)	341, 554, 611
TasI	AATT	7 cut(s)	137, 229, 378, 409, 614, 639, 930
TatI	WGTACW	1 cut(s)	970
TfiI	GAWTC	2 cut(s)	847, 874
Tru1I	TTAA	7 cut(s)	42, 68, 335, 377, 407, 561, 985
Tru9I	TTAA	7 cut(s)	42, 68, 335, 377, 407, 561, 985
TseI	GCWGC	4 cut(s)	77, 419, 868, 889
TspDTI	ATGAA	2 cut(s)	363, 611
TspGWI	ACGGA	2 cut(s)	227, 501
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	2 cut(s)	137, 409
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	3 cut(s)	31, 949, 977
XhoI	CTCGAG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	3 cut(s)	398, 671, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.