Rh1BG133600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22352616 .. 22355364
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG133600.1

Sequence Viewer

Length: 609 bp
ATGAAGCAATTGATCCATGGGAAACCGTCGACTCCGATTCGCATCCGGAACGGGAAGACCCGAGGCTTCAGCGACCGAACGACGACGACCTCTTGCTCCAGAAGCTTTCGCCTCTCCGGTACCGCCACGGCGACGTCGTCGTCGGCTCCGTCACCATCATCCACTCGAATTCGAACGAATCAGGTTCATGTTGGTGTGATTCTCGATATGGAATCAAGGGAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTCTCTGATTTTTACCATCTGCACTATAACTACACGACAAGAATAGTTCTCTACAGTAAGGATTCCAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGCTCTTGACTTTTTGGAAAATTTCAAAGTGGAAGTAATAATTGGTGCACCAAAAAGAGCAGAAGCAAATCTTCTGGCAGAATTAGGAGAAGCGGCCAAACTCCCTTTAATGTCTCTGTCTCCTGTTCGGACTGACAATAAATATCCCTTCTTTGTTGAGATCATGAGCGCTGATGAAGCGGCTGAAGTTAAGGGAATTAGTGCCATCATTGAAGTTTTCAAATGGAGGGATGTTATCCTTTTATATGATAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

202

Amino Acids

22.36

Weight (kDa)

9.37

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 80 - 200 2.9e-18 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AatII GACGTC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 123, 443, 530
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 2 cut(s) 168, 370
AcuI CTGAAG 2 cut(s) 52, 555
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 121
AfeI AGCGCT 1 cut(s) 520
AgsI TTSAA 4 cut(s) 249, 376, 563, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
AluBI AGCT 3 cut(s) 105, 240, 350
AluI AGCT 3 cut(s) 105, 240, 350
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 468, 474
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 1 cut(s) 7
Ama87I CYCGRG 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 45
Aor51HI AGCGCT 1 cut(s) 520
AoxI GGCC 2 cut(s) 252, 444
ApaLI GTGCAC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 240, 350
ApoI RAATTY 2 cut(s) 168, 370
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 144, 338
AsuII TTCGAA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 227, 337
BccI CCATC 3 cut(s) 163, 279, 563
BceAI ACGGC 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 468, 474
BfmI CTRYAG 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 522
BisI GCNGC 4 cut(s) 241, 351, 444, 531
BlsI GCNGC 4 cut(s) 242, 352, 445, 532
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 121, 147
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 16, 61, 126
BsaWI WCCGGW 2 cut(s) 45, 116
Bse8I GATNNNNATC 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 16, 61, 126
BseGI GGATG 3 cut(s) 42, 158, 586
BseJI GATNNNNATC 1 cut(s) 41
BseMII CTCAG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 2 cut(s) 227, 337
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 254, 446
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 46, 117
BsmAI GTCTC 2 cut(s) 468, 474
BsnI GGCC 2 cut(s) 254, 446
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 400
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 2 cut(s) 12, 510
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 3 cut(s) 123, 443, 530
BspANI GGCC 2 cut(s) 254, 446
BspCNI CTCAG 1 cut(s) 249
BspEI TCCGGA 1 cut(s) 45
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 121, 147
BspPI GGATC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 16, 61, 126
BssMI GATC 2 cut(s) 12, 510
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 27, 311
BstACI GRCGYC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 2 cut(s) 16, 126
BstF5I GGATG 3 cut(s) 42, 158, 586
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 2 cut(s) 15, 513
BstMAI GTCTC 2 cut(s) 468, 474
BstMBI GATC 2 cut(s) 12, 510
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 102, 347, 527
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 227, 337
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 254, 446
BtgI CCRYGG 2 cut(s) 16, 126
BtsCI GGATG 3 cut(s) 42, 158, 586
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 513
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 120
CviAII CATG 3 cut(s) 17, 188, 514
CviJI RGCY 8 cut(s) 66, 105, 146, 240, 254, 350, 446, 533
CviKI_1 RGCY 8 cut(s) 66, 105, 146, 240, 254, 350, 446, 533
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 14, 512
DpnII GATC 2 cut(s) 12, 510
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 520
Eco57I CTGAAG 2 cut(s) 52, 555
Eco88I CYCGRG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 3 cut(s) 20, 191, 517
FaiI YATR 7 cut(s) 18, 189, 209, 282, 515, 595, 597
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 3 cut(s) 16, 187, 513
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 241, 351, 444, 531
FokI GGATG 3 cut(s) 29, 145, 593
Fsp4HI GCNGC 4 cut(s) 241, 351, 444, 531
GlaI GCGC 1 cut(s) 520
GluI GCNGC 4 cut(s) 241, 351, 444, 531
GsuI CTGGAG 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 2 cut(s) 254, 446
HapII CCGG 2 cut(s) 46, 117
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 20, 191, 517
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 6 cut(s) 31, 37, 178, 199, 212, 317
HpaII CCGG 2 cut(s) 46, 117
HphI GGTGA 2 cut(s) 144, 338
Hpy166II GTNNAC 3 cut(s) 30, 329, 398
Hpy188I TCNGA 3 cut(s) 36, 262, 480
Hpy188III TCNNGA 5 cut(s) 46, 99, 203, 356, 514
Hpy8I GTNNAC 3 cut(s) 30, 329, 398
Hpy99I CGWCG 7 cut(s) 31, 85, 88, 136, 139, 142, 145
HpyAV CCTTC 2 cut(s) 215, 508
HpyCH4III ACNGT 2 cut(s) 27, 311
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 243, 277, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 347, 527
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 20, 191, 517
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 45
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 12, 510
LmnI GCTCC 2 cut(s) 101, 151
LpnPI CCDG 7 cut(s) 59, 112, 130, 167, 351, 410, 486
Lsp1109I GCAGC 2 cut(s) 227, 337
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 14, 512
MboI GATC 2 cut(s) 12, 510
MboII GAAGA 2 cut(s) 67, 413
MfeI CAATTG 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 6 cut(s) 8, 168, 370, 390, 431, 546
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 6 cut(s) 56, 100, 122, 266, 342, 570
MroI TCCGGA 1 cut(s) 45
MseI TTAA 2 cut(s) 458, 540
MslI CAYNNNNRTG 2 cut(s) 192, 248
MspA1I CMGCKG 2 cut(s) 240, 350
MspI CCGG 2 cut(s) 46, 117
MunI CAATTG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 102, 347, 527
NcoI CCATGG 1 cut(s) 16
NdeII GATC 2 cut(s) 12, 510
NlaIII CATG 3 cut(s) 20, 191, 517
NlaIV GGNNCC 2 cut(s) 121, 147
NmuCI GTSAC 1 cut(s) 150
NspV TTCGAA 1 cut(s) 172
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 2 cut(s) 134, 146
PfeI GAWTC 5 cut(s) 37, 178, 199, 212, 317
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 242, 352, 445, 532
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 121, 147
PspPI GGNCC 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 2 cut(s) 240, 350
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 2 cut(s) 192, 248
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 458, 540
SatI GCNGC 4 cut(s) 241, 351, 444, 531
Sau3AI GATC 2 cut(s) 12, 510
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 400
SetI ASST 8 cut(s) 92, 107, 137, 186, 242, 328, 334, 352
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 192, 248
Sse9I AATT 6 cut(s) 8, 168, 370, 390, 431, 546
SsiI CCGC 3 cut(s) 123, 443, 530
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 2 cut(s) 27, 311
TaiI ACGT 1 cut(s) 137
TaqI TCGA 4 cut(s) 29, 166, 172, 204
TaqII GACCGA 1 cut(s) 90
TasI AATT 6 cut(s) 8, 168, 370, 390, 431, 546
TauI GCSGC 2 cut(s) 446, 533
TfiI GAWTC 5 cut(s) 37, 178, 199, 212, 317
Tru1I TTAA 2 cut(s) 458, 540
Tru9I TTAA 2 cut(s) 458, 540
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 2 cut(s) 240, 350
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 17, 176, 540
TspGWI ACGGA 1 cut(s) 138
Tth111I GACNNNGTC 1 cut(s) 136
VneI GTGCAC 1 cut(s) 396
XapI RAATTY 2 cut(s) 168, 370
XmiI GTMKAC 1 cut(s) 29
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.