Rh1CG157800

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000294
Physical Location & Seq
Forward (+)
34909616 .. 34940551
30936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG157800.1

Sequence Viewer

Length: 873 bp
ATGGACTTTCAGGGGAAGAAGCAAACCATTTTCTGCGTCTCCTTTGTAACCTTGTGCCTCCTGGGTGACATATTTGCTCAAAGTAATAAAGAATTAATGCATTATGACAATAATCTGCTAACTGTGGAAGAAGTTCATGTTGGTGTGATTCTGGATATGCAATCAAGGGAAGGAAAGATTGTGCTCAGCTGCATTTCGACGGCTCTGTCGGATTTTTATCATCTGCATAATAATTACAGCACAAGAGTAGTAGTCCACAGTAGAGACTCCAATGGAAAACATCTACATGCTCTATCAGCTGCTCTTGATCTTTTGAATAACATCAAAGTGAAAGCAATAATTGGTGCACAAACACTAATCGAAGCAAACCTATTAGCGGATTTAGGAGAAGATGTTACAGTTCCTGTATTGTCTCTGTCTCAACCTAGTCTAGCTCCTCGTCTGACCGACAAAAATCCCTTCTTTGTTGAGGTCAGACGGGATGAAACTTCGCAGGTTACAGAACGTAAAATATATGATTTTGAAGATATGATATATGAATCTAACCAAACCCTCTCATACATTTCACACATTGCTTTCCCTAAAGGCTCGAAATTGGCACATGACATGTCAATCCAAGTTGAAAAATTGAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCATTATAATGGGAATCACATGTTTGAGGACACAGCAAGTCCTCCCAATACTCTTAATCTTAGCAGCTTTCGTGGTTTATTCCTTGTTAGTGGGGTTTCTTCAGCTTTTGCTCTATTTTTGTTCACAATTTCTCCACTCAGAGAGAAATGGCAACTTGTGAAGAAATGCAGATATCTTATTCAGGTTACGCTGCTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

290

Amino Acids

32.86

Weight (kDa)

6.12

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 63 - 166 9.8e-12 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
AasI GACNNNNNNGTC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 484
AciI CCGC 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 756
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 2 cut(s) 606, 690
AgsI TTSAA 3 cut(s) 316, 524, 623
AjnI CCWGG 2 cut(s) 60, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 6 cut(s) 189, 299, 434, 646, 738, 776
AluI AGCT 6 cut(s) 189, 299, 434, 646, 738, 776
Alw21I GWGCWC 2 cut(s) 186, 349
Alw26I GTCTC 4 cut(s) 43, 258, 417, 423
Alw44I GTGCAC 1 cut(s) 345
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 663
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 189, 299, 735, 862
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 186, 349
BbvI GCAGC 4 cut(s) 176, 286, 747, 849
BccI CCATC 1 cut(s) 649
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 62, 667
BcoDI GTCTC 4 cut(s) 43, 258, 417, 423
BfaI CTAG 2 cut(s) 426, 431
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 4 cut(s) 190, 300, 736, 863
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 4 cut(s) 191, 301, 737, 864
Bme1390I CCNGG 2 cut(s) 62, 667
BmrFI CCNGG 2 cut(s) 62, 667
Bpu1102I GCTNAGC 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 4 cut(s) 378, 408, 787, 817
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 2 cut(s) 62, 667
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 2 cut(s) 199, 823
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 4 cut(s) 176, 286, 747, 849
BshFI GGCC 1 cut(s) 665
BsiHKAI GWGCWC 2 cut(s) 186, 349
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 4 cut(s) 43, 258, 417, 423
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 665
Bsp1286I GDGCHC 2 cut(s) 186, 349
Bsp143I GATC 1 cut(s) 307
Bsp1720I GCTNAGC 1 cut(s) 185
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 2 cut(s) 198, 822
BspMI ACCTGC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 62, 667
Bst4CI ACNGT 3 cut(s) 124, 260, 400
BstDEI CTNAG 3 cut(s) 185, 731, 809
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 4 cut(s) 43, 258, 417, 423
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 2 cut(s) 62, 667
BstNSI RCATGY 3 cut(s) 290, 610, 694
BstSCI CCNGG 2 cut(s) 60, 665
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 4 cut(s) 176, 286, 747, 849
BsuRI GGCC 1 cut(s) 665
BtsCI GGATG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 484
CaiI CAGNNNCTG 1 cut(s) 404
CseI GACGC 1 cut(s) 25
CviAII CATG 5 cut(s) 137, 287, 602, 607, 691
CviJI RGCY 9 cut(s) 189, 203, 299, 434, 588, 646, 665, 738, 776
CviKI_1 RGCY 9 cut(s) 189, 203, 299, 434, 588, 646, 665, 738, 776
DdeI CTNAG 3 cut(s) 185, 731, 809
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DrdI GACNNNNNNGTC 1 cut(s) 205
DseDI GACNNNNNNGTC 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 665
Eco32I GATATC 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 60, 665
EcoRV GATATC 1 cut(s) 845
EcoT22I ATGCAT 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 5 cut(s) 140, 290, 605, 610, 694
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FatI CATG 5 cut(s) 136, 286, 601, 606, 690
Fnu4HI GCNGC 4 cut(s) 190, 300, 736, 863
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 4 cut(s) 190, 300, 736, 863
FspBI CTAG 2 cut(s) 426, 431
GluI GCNGC 4 cut(s) 190, 300, 736, 863
HaeIII GGCC 1 cut(s) 665
HgaI GACGC 1 cut(s) 25
Hin1II CATG 5 cut(s) 140, 290, 605, 610, 694
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 4 cut(s) 148, 266, 539, 685
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 3 cut(s) 256, 347, 795
Hpy188I TCNGA 4 cut(s) 211, 444, 476, 812
Hpy188III TCNNGA 2 cut(s) 152, 305
Hpy8I GTNNAC 3 cut(s) 256, 347, 795
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 164, 469, 632
HpyCH4III ACNGT 3 cut(s) 124, 260, 400
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 6 cut(s) 100, 160, 192, 226, 347, 840
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 3 cut(s) 185, 731, 809
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 5 cut(s) 140, 290, 605, 610, 694
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 8 cut(s) 47, 74, 137, 417, 479, 652, 679, 839
Lsp1109I GCAGC 4 cut(s) 176, 286, 747, 849
MaeI CTAG 2 cut(s) 426, 431
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 5 cut(s) 46, 65, 394, 496, 856
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 7 cut(s) 28, 140, 401, 536, 647, 762, 844
MhlI GDGCHC 2 cut(s) 186, 349
MluCI AATT 7 cut(s) 92, 232, 339, 593, 626, 798, 868
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 6 cut(s) 68, 447, 463, 563, 691, 723
Mph1103I ATGCAT 1 cut(s) 102
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 3 cut(s) 95, 726, 871
MslI CAYNNNNRTG 4 cut(s) 141, 285, 326, 678
MspA1I CMGCKG 2 cut(s) 189, 299
MspR9I CCNGG 2 cut(s) 62, 667
MvaI CCWGG 2 cut(s) 62, 667
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 307
NlaIII CATG 5 cut(s) 140, 290, 605, 610, 694
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 3 cut(s) 290, 610, 694
PceI AGGCCT 1 cut(s) 665
PciI ACATGT 2 cut(s) 606, 690
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 148, 539, 685
PkrI GCNGC 4 cut(s) 191, 301, 737, 864
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PscI ACATGT 2 cut(s) 606, 690
PshBI ATTAAT 1 cut(s) 95
PsiI TTATAA 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 60, 665
PspGI CCWGG 2 cut(s) 60, 665
PstNI CAGNNNCTG 1 cut(s) 404
PvuII CAGCTG 2 cut(s) 189, 299
RseI CAYNNNNRTG 4 cut(s) 141, 285, 326, 678
SaqAI TTAA 3 cut(s) 95, 726, 871
SatI GCNGC 4 cut(s) 190, 300, 736, 863
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 62, 667
SduI GDGCHC 2 cut(s) 186, 349
SmiMI CAYNNNNRTG 4 cut(s) 141, 285, 326, 678
Sse9I AATT 7 cut(s) 92, 232, 339, 593, 626, 798, 868
SseBI AGGCCT 1 cut(s) 665
SsiI CCGC 1 cut(s) 377
SspMI CTAG 2 cut(s) 426, 431
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 2 cut(s) 60, 665
TaaI ACNGT 3 cut(s) 124, 260, 400
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 197, 360, 590
TaqII GACCGA 1 cut(s) 461
TasI AATT 7 cut(s) 92, 232, 339, 593, 626, 798, 868
TfiI GAWTC 3 cut(s) 148, 539, 685
Tru1I TTAA 3 cut(s) 95, 726, 871
Tru9I TTAA 3 cut(s) 95, 726, 871
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 4 cut(s) 189, 299, 735, 862
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 125, 498, 552, 662
VneI GTGCAC 1 cut(s) 345
VspI ATTAAT 1 cut(s) 95
XceI RCATGY 3 cut(s) 290, 610, 694
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 426, 431
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.