RchiOBHm_Chr1g0341731

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000294
Physical Location & Seq
Reverse (-)
33474731 .. 33476944
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56841

Sequence Viewer

Length: 219 bp
ATGGCCCTCTCTGATTTTTACCATCTGCATGATAACTACAGCACAAAAGTAGTTCTCCACAGTAAGGATTCCAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGCCCTTGGTCTTTTGGAAAACATCAAAGTGGAATCAATAATTGGTGCACAAACAAGAGCAGAAGCAAATCTTTTGGCAGAATTAGGAGAAGTGGCTATGCTCCCTTTCGTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

72

Amino Acids

7.76

Weight (kDa)

5.1

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 1 - 71 2.1e-07 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 147
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 151
BspANI GGCC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 5, 101, 197
CviKI_1 RGCY 3 cut(s) 5, 101, 197
Eco130I CCWWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 30, 200
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 32
HinfI GANTC 2 cut(s) 68, 134
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 80, 149
Hpy188I TCNGA 2 cut(s) 13, 218
Hpy8I GTNNAC 2 cut(s) 80, 149
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 28, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 1 cut(s) 32
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 1 cut(s) 102
Lsp1109I GCAGC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 2 cut(s) 141, 182
MnlI CCTC 2 cut(s) 17, 93
MslI CAYNNNNRTG 2 cut(s) 27, 128
MspA1I CMGCKG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 32
PfeI GAWTC 2 cut(s) 68, 134
PkrI GCNGC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 27, 128
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 79, 85, 103
SfcI CTRYAG 1 cut(s) 37
SgeI CNNG 4 cut(s) 41, 101, 119, 168
SmiMI CAYNNNNRTG 2 cut(s) 27, 128
Sse9I AATT 2 cut(s) 141, 182
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 62
TasI AATT 2 cut(s) 141, 182
TfiI GAWTC 2 cut(s) 68, 134
TseI GCWGC 1 cut(s) 101
VneI GTGCAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.