Rh1CG155600

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000294
Physical Location & Seq
Forward (+)
34545225 .. 34549385
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG155600.1

Sequence Viewer

Length: 798 bp
ATGGAGTTTCGAGGGTTGAGGCAAACAGTGATCCTGGCCTTTGTGACCTTCTGTTGCCTCATTGGTCAGCTGTGTGCTGATATTGAAAAAACAAATAATGTTATTAATCCTATTGTTGTTGAAGATCACGTTCACGTCGGTGTTATTCTCGATATGGGATCAAGAGAAGGAAAGATTATTCTCAGCTGCATATCAATGGCCCTCTCTGATTTTTATCATCTGCATGATAACTACAGCACAAAAGTAGTTCTCCACAGTAAGGATTCCAAAGGTGAACGTCTGCCTGCTCTGTCAGCTGCCCTTGGTCTTTTGGAAAACATCAGAGTGGAATCAATAATTGGTGCACAAACAAGAGCAGAAGCAAACCTTTTGGCAGAATTAGGAGAAGCGGCCAAACTGCCTGTTTTCCCTAAAGGTTCGAAATTGGTTCAAGATGTGTCAAGGCAAATTGAACGTCTGAGACAGGAAGAAAAGCTTATAGAGATGGAGAAGACCTGGTTTCTTAGAAAAACAATTCTCATGTCTGATGAGGATATTAATAACAAAGATCCCAATACGATTGACCTCTACGACATCCGCGGTCTATTCGTTATTAGTGGCGCTTCTTTAGCGATTGCTCTTTTCTTATTCATAGTTGTATCCCATAGATTTAGAAATCTGATTAGAGGACTAGTGCAGTTGATTGGAAGACAACTACAGCGTTTAAGGATGTTTGTCTCCAACAAAGTATGCAGTAGAACTGAACAAAACTGCTGCATGTCACTTCCTATGCAATTGTACATATACACTGTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

265

Amino Acids

30.01

Weight (kDa)

8.45

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 63 - 140 3.4e-08 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AciI CCGC 3 cut(s) 389, 577, 579
AclWI GGATC 3 cut(s) 25, 166, 542
AcoI YGGCCR 1 cut(s) 390
AfaI GTAC 1 cut(s) 779
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 4 cut(s) 86, 122, 431, 452
AhlI ACTAGT 1 cut(s) 670
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 33, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 4 cut(s) 70, 186, 296, 475
AluI AGCT 4 cut(s) 70, 186, 296, 475
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 454, 721
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 3 cut(s) 25, 166, 542
AoxI GGCC 3 cut(s) 36, 198, 390
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 186, 296, 753
ArsI GACNNNNNNTTYG 2 cut(s) 439, 471
AseI ATTAAT 2 cut(s) 105, 537
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 497, 694
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 173, 283, 740
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 2 cut(s) 35, 496
BciVI GTATCC 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 454, 721
BcuI ACTAGT 1 cut(s) 670
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 2 cut(s) 232, 695
BfoI RGCGCY 1 cut(s) 603
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 4 cut(s) 187, 297, 390, 754
BlsI GCNGC 4 cut(s) 188, 298, 391, 755
Bme1390I CCNGG 2 cut(s) 35, 496
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 35, 496
BpiI GAAGAC 2 cut(s) 497, 694
Bpu14I TTCGAA 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 301, 577
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 35, 496
BseDI CCNNGG 2 cut(s) 301, 577
BseGI GGATG 2 cut(s) 573, 714
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 196, 449
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 3 cut(s) 173, 283, 740
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 3 cut(s) 38, 200, 392
BsiHKAI GWGCWC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 454, 721
BsnI GGCC 3 cut(s) 38, 200, 392
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 4 cut(s) 30, 124, 158, 547
BspACI CCGC 3 cut(s) 389, 577, 579
BspANI GGCC 3 cut(s) 38, 200, 392
BspCNI CTCAG 2 cut(s) 195, 450
BspFNI CGCG 1 cut(s) 579
BspPI GGATC 3 cut(s) 25, 166, 542
BspT104I TTCGAA 1 cut(s) 419
BsrGI TGTACA 1 cut(s) 777
BssECI CCNNGG 2 cut(s) 301, 577
BssMI GATC 4 cut(s) 30, 124, 158, 547
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 35, 496
Bst4CI ACNGT 3 cut(s) 28, 257, 790
BstAUI TGTACA 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 3 cut(s) 182, 458, 503
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 2 cut(s) 573, 714
BstFNI CGCG 1 cut(s) 579
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 4 cut(s) 33, 127, 161, 550
BstMAI GTCTC 2 cut(s) 454, 721
BstMBI GATC 4 cut(s) 30, 124, 158, 547
BstMWI GCNNNNNNNGC 2 cut(s) 293, 608
BstNI CCWGG 2 cut(s) 35, 496
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 2 cut(s) 33, 494
BstSFI CTRYAG 2 cut(s) 232, 695
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 173, 283, 740
BstV2I GAAGAC 2 cut(s) 497, 694
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 3 cut(s) 38, 200, 392
BtgI CCRYGG 1 cut(s) 577
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 573, 714
BtsIMutI CAGTG 2 cut(s) 33, 786
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 199
Cfr42I CCGCGG 1 cut(s) 580
CsiI ACCWGGT 1 cut(s) 494
Csp6I GTAC 1 cut(s) 778
CviAII CATG 3 cut(s) 224, 520, 757
CviJI RGCY 7 cut(s) 38, 70, 186, 200, 296, 392, 475
CviKI_1 RGCY 7 cut(s) 38, 70, 186, 200, 296, 392, 475
CviQI GTAC 1 cut(s) 778
DdeI CTNAG 3 cut(s) 182, 458, 503
DpnI GATC 4 cut(s) 32, 126, 160, 549
DpnII GATC 4 cut(s) 30, 124, 158, 547
EaeI YGGCCR 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 33, 494
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 3 cut(s) 227, 523, 760
FalI AAGNNNNNCTT 4 cut(s) 351, 383, 459, 491
FatI CATG 3 cut(s) 223, 519, 756
Fnu4HI GCNGC 4 cut(s) 187, 297, 390, 754
FokI GGATG 2 cut(s) 560, 721
Fsp4HI GCNGC 4 cut(s) 187, 297, 390, 754
FspBI CTAG 1 cut(s) 671
GlaI GCGC 1 cut(s) 601
GluI GCNGC 4 cut(s) 187, 297, 390, 754
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 3 cut(s) 38, 200, 392
HhaI GCGC 1 cut(s) 602
Hin1II CATG 3 cut(s) 227, 523, 760
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 2 cut(s) 263, 329
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 133, 275, 344
Hpy188I TCNGA 6 cut(s) 208, 323, 459, 526, 660, 794
Hpy188III TCNNGA 3 cut(s) 149, 162, 431
Hpy8I GTNNAC 3 cut(s) 133, 275, 344
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 58, 161
HpyCH4III ACNGT 3 cut(s) 28, 257, 790
HpyCH4IV ACGT 4 cut(s) 129, 135, 277, 454
HpyCH4V TGCA 7 cut(s) 189, 223, 344, 676, 732, 756, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 608
HpyF3I CTNAG 3 cut(s) 182, 458, 503
HpySE526I ACGT 4 cut(s) 129, 135, 277, 454
Hsp92II CATG 3 cut(s) 227, 523, 760
HspAI GCGC 1 cut(s) 600
KspI CCGCGG 1 cut(s) 580
Kzo9I GATC 4 cut(s) 30, 124, 158, 547
LpnPI CCDG 7 cut(s) 20, 47, 297, 414, 449, 481, 508
Lsp1109I GCAGC 3 cut(s) 173, 283, 740
MabI ACCWGGT 1 cut(s) 494
MaeI CTAG 1 cut(s) 671
MaeII ACGT 4 cut(s) 129, 135, 277, 454
MaeIII GTNAC 2 cut(s) 43, 759
MalI GATC 4 cut(s) 32, 126, 160, 549
MboI GATC 4 cut(s) 30, 124, 158, 547
MboII GAAGA 4 cut(s) 134, 479, 502, 699
MfeI CAATTG 1 cut(s) 773
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 6 cut(s) 336, 377, 422, 447, 513, 773
MmeI TCCRAC 1 cut(s) 744
MnlI CCTC 7 cut(s) 5, 12, 68, 212, 523, 575, 659
MseI TTAA 3 cut(s) 105, 537, 704
MslI CAYNNNNRTG 4 cut(s) 138, 194, 222, 323
MspA1I CMGCKG 4 cut(s) 70, 186, 296, 579
MspR9I CCNGG 2 cut(s) 35, 496
MunI CAATTG 1 cut(s) 773
MvaI CCWGG 2 cut(s) 35, 496
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 293, 608
NdeII GATC 4 cut(s) 30, 124, 158, 547
NlaIII CATG 3 cut(s) 227, 523, 760
NmuCI GTSAC 2 cut(s) 43, 759
NspI RCATGY 1 cut(s) 760
NspV TTCGAA 1 cut(s) 419
OliI CACNNNNGTG 1 cut(s) 138
PfeI GAWTC 2 cut(s) 263, 329
PkrI GCNGC 4 cut(s) 188, 298, 391, 755
PshBI ATTAAT 2 cut(s) 105, 537
Psp6I CCWGG 2 cut(s) 33, 494
PspGI CCWGG 2 cut(s) 33, 494
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 3 cut(s) 70, 186, 296
RsaI GTAC 1 cut(s) 779
RsaNI GTAC 1 cut(s) 778
RseI CAYNNNNRTG 4 cut(s) 138, 194, 222, 323
SacII CCGCGG 1 cut(s) 580
SaqAI TTAA 3 cut(s) 105, 537, 704
SatI GCNGC 4 cut(s) 187, 297, 390, 754
Sau3AI GATC 4 cut(s) 30, 124, 158, 547
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 35, 496
SduI GDGCHC 1 cut(s) 346
SexAI ACCWGGT 1 cut(s) 494
SfcI CTRYAG 2 cut(s) 232, 695
Sfr303I CCGCGG 1 cut(s) 580
SfuI TTCGAA 1 cut(s) 419
SgrBI CCGCGG 1 cut(s) 580
SmiMI CAYNNNNRTG 4 cut(s) 138, 194, 222, 323
SpeI ACTAGT 1 cut(s) 670
Sse9I AATT 6 cut(s) 336, 377, 422, 447, 513, 773
SsiI CCGC 3 cut(s) 389, 577, 579
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 2 cut(s) 33, 494
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 28, 257, 790
TaiI ACGT 4 cut(s) 132, 138, 280, 457
TaqI TCGA 3 cut(s) 10, 150, 419
TasI AATT 6 cut(s) 336, 377, 422, 447, 513, 773
TatI WGTACW 1 cut(s) 777
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 2 cut(s) 263, 329
Tru1I TTAA 3 cut(s) 105, 537, 704
Tru9I TTAA 3 cut(s) 105, 537, 704
TscAI CASTG 2 cut(s) 33, 793
TseFI GTSAC 2 cut(s) 43, 759
TseI GCWGC 3 cut(s) 186, 296, 753
Tsp45I GTSAC 2 cut(s) 43, 759
TspDTI ATGAA 1 cut(s) 619
TspRI CASTG 2 cut(s) 33, 793
VneI GTGCAC 1 cut(s) 342
VspI ATTAAT 2 cut(s) 105, 537
XceI RCATGY 1 cut(s) 760
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.