Rh1BG135900

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22707137 .. 22707535
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG135900.1

Sequence Viewer

Length: 399 bp
ATGGCTCAAATGTATGGAGTGTCACTCTGCATATTATTTTGCTTCCTGGGTCTCTTGTGCGCTGAAGTTGATGAAAAAGTGCATTACAACAGTCCTAGTGTTGTGGACGAGGTTGACGTTGGTGTGATTCTTGATATGGGATCAAGGGAAGCAAAACTTGTTCTCAGTTGCATTTCAATGGCCCTGTCTGATTTCTACAATCTGCACAACAACTACAGCACAAGAGTAGTTCTCCACAGTAGGGATTCCCATGGAAAAGCTCTACATGCTCTATCAGCTGGTAAGCTATTCTTGATTATGACTGTGTGTGTGTGTGTGCGCGTGCGCGCCCCTCGTTCATTCATATCTATCGCCACTTTCTTGTTGTTTTCTTCTCCATGTTTACAAAAACTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

7.61

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 397
AccII CGCG 2 cut(s) 321, 327
AclWI GGATC 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 177
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 260, 278, 286
AluI AGCT 3 cut(s) 260, 278, 286
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 148
AoxI GGCC 1 cut(s) 180
AspLEI GCGC 4 cut(s) 62, 321, 327, 329
AspS9I GGNCC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 47
BplI GAGNNNNNCTC 4 cut(s) 9, 41, 216, 248
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 46, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 46, 250
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 178
BsePI GCGCGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 2 cut(s) 321, 327
BshFI GGCC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 140
Bsp19I CCATGG 1 cut(s) 250
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 2 cut(s) 321, 327
BspPI GGATC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 46, 250
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 92, 239, 304
BstC8I GCNNGC 2 cut(s) 323, 327
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 321, 327
BstHHI GCGC 4 cut(s) 62, 321, 327, 329
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 266, 275
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 214
BstUI CGCG 2 cut(s) 321, 327
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 323, 327
CfoI GCGC 4 cut(s) 62, 321, 327, 329
Cfr13I GGNCC 1 cut(s) 181
CviAII CATG 3 cut(s) 251, 266, 378
CviJI RGCY 5 cut(s) 5, 182, 260, 278, 286
CviKI_1 RGCY 5 cut(s) 5, 182, 260, 278, 286
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 254, 269, 381
FaiI YATR 9 cut(s) 15, 32, 137, 252, 267, 299, 344, 379, 397
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 275, 307
FatI CATG 3 cut(s) 250, 265, 377
FspBI CTAG 1 cut(s) 96
GlaI GCGC 4 cut(s) 61, 320, 326, 328
HaeIII GGCC 1 cut(s) 182
HhaI GCGC 4 cut(s) 62, 321, 327, 329
Hin1II CATG 3 cut(s) 254, 269, 381
Hin6I GCGC 4 cut(s) 60, 319, 325, 327
HinP1I GCGC 4 cut(s) 60, 319, 325, 327
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 2 cut(s) 127, 245
Hpy166II GTNNAC 3 cut(s) 106, 115, 383
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 131, 292
Hpy8I GTNNAC 3 cut(s) 106, 115, 383
HpyCH4III ACNGT 3 cut(s) 92, 239, 304
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 30, 82, 171, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 275
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 254, 269, 381
HspAI GCGC 4 cut(s) 60, 319, 325, 327
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 4 cut(s) 32, 59, 197, 264
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 21
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 1 cut(s) 363
MnlI CCTC 2 cut(s) 103, 342
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 321, 327
MwoI GCNNNNNNNGC 2 cut(s) 266, 275
NcoI CCATGG 1 cut(s) 250
NdeII GATC 1 cut(s) 140
NlaIII CATG 3 cut(s) 254, 269, 381
NmuCI GTSAC 1 cut(s) 21
NspI RCATGY 1 cut(s) 269
PauI GCGCGC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 127, 245
PsiI TTATAA 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspPI GGNCC 1 cut(s) 181
PteI GCGCGC 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 176
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 47
SetI ASST 5 cut(s) 114, 120, 262, 280, 288
SfcI CTRYAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 176
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 92, 239, 304
TaiI ACGT 1 cut(s) 120
TfiI GAWTC 2 cut(s) 127, 245
TseFI GTSAC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 87, 327, 331
XceI RCATGY 1 cut(s) 269
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.