Rh5DG442700

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
70878049 .. 70902393
24345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG442700.1

Sequence Viewer

Length: 273 bp
ATGTCAGCTGGTTCAAAATTGGCTCGTAACGTGTCGAAGCAAATTGAATATCTGAGAGAGGAAGGAAAGCTTATGGAGATGGAAAAGACCTGGTTTCATAGAAGAACAGACGACGAAGATAAGTCTAAGAGCGATGCCGATACGATTGATCTCTACGACTTTCGTGGATTATTCCTTATTAGTGGAGATGAACTCACCAACAACAAGAGCGAAATGATGACGACGACCTCCGGTGACGGAGATAGAGGTGGGTTTTCAGATCAGAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.32

Weight (kDa)

4.78

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 15, 47
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 2 cut(s) 8, 70
AluI AGCT 2 cut(s) 8, 70
AsuHPI GGTGA 2 cut(s) 187, 245
BccI CCATC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BsaWI WCCGGW 1 cut(s) 230
BseBI CCWGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 231
Bsp143I GATC 2 cut(s) 148, 259
BspCNI CTCAG 1 cut(s) 45
BssMI GATC 2 cut(s) 148, 259
Bst2UI CCWGG 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 53, 126
BstKTI GATC 2 cut(s) 151, 262
BstMBI GATC 2 cut(s) 148, 259
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 147
CsiI ACCWGGT 1 cut(s) 89
CviJI RGCY 3 cut(s) 8, 23, 70
CviKI_1 RGCY 3 cut(s) 8, 23, 70
DdeI CTNAG 2 cut(s) 53, 126
DpnI GATC 2 cut(s) 150, 261
DpnII GATC 2 cut(s) 148, 259
EcoRII CCWGG 1 cut(s) 89
FaiI YATR 2 cut(s) 74, 99
FalI AAGNNNNNCTT 2 cut(s) 54, 86
HapII CCGG 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 68
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 187, 245
Hpy188I TCNGA 3 cut(s) 54, 259, 264
Hpy99I CGWCG 2 cut(s) 116, 226
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 30
HpyF3I CTNAG 2 cut(s) 53, 126
HpySE526I ACGT 1 cut(s) 30
Kzo9I GATC 2 cut(s) 148, 259
LpnPI CCDG 3 cut(s) 76, 103, 244
LweI GCATC 1 cut(s) 124
MabI ACCWGGT 1 cut(s) 89
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 26, 233
MalI GATC 2 cut(s) 150, 261
MboI GATC 2 cut(s) 148, 259
MboII GAAGA 2 cut(s) 114, 128
MluCI AATT 2 cut(s) 17, 42
MnlI CCTC 4 cut(s) 52, 238, 239, 258
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
NdeII GATC 2 cut(s) 148, 259
NmuCI GTSAC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 8
Sau3AI GATC 2 cut(s) 148, 259
ScrFI CCNGG 1 cut(s) 91
SetI ASST 6 cut(s) 10, 33, 72, 92, 230, 250
SexAI ACCWGGT 1 cut(s) 89
SfaNI GCATC 1 cut(s) 124
SgeI CNNG 8 cut(s) 21, 36, 43, 102, 103, 176, 217, 243
Sse9I AATT 2 cut(s) 17, 42
StyD4I CCNGG 1 cut(s) 89
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 17, 42
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 86, 204
TspGWI ACGGA 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.