RchiOBHm_Chr1g0341721

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000294
Physical Location & Seq
Reverse (-)
33473244 .. 33474729
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56840

Sequence Viewer

Length: 426 bp
ATGATAACAAAGAATATGAGAAAGACTTCATTCCATCATTATCAACTCCTTCCAAGAGATCACACATCGGATTGTTTCATACAAGAGTTCAATATTGCTTCCTCATCAAATGAAGAAATCACTGAAGAGCTCCAAAAGTTGACGAGATTGAAGATTAGGGTATTTGTGGTGCATGTGTCACATTTGCTTGCACCAAGCCTTTTCTTAAGTGCAAATAAGTTAGGGATGATGAGTGAAGGGTATGCTTGGATTGGGAATTCGAGTAGCGTGAATTTATTGCAATCCATGAATTTTGCCGTTATCGAGTCAATCCAAGCAGTGCTGGGTTTTAAGTCTTCTATTCCAGCATCAATAAACCTTCACAGTCTTACAACAAGATTGAAGAGGAAGTTTTACATGGAGGATCCAGATATAGAAGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

141

Amino Acids

16.05

Weight (kDa)

7.93

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 32 - 124 1e-14 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 398, 411
AcsI RAATTY 3 cut(s) 256, 271, 289
AcuI CTGAAG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 205
AgsI TTSAA 3 cut(s) 91, 151, 382
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 2 cut(s) 398, 411
ApoI RAATTY 3 cut(s) 256, 271, 289
Asp700I GAANNNNTTC 1 cut(s) 25
BamHI GGATCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 405
BmsI GCATC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 327
BseGI GGATG 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 58, 403
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 2 cut(s) 398, 411
BspQI GCTCTTC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 205
BssMI GATC 2 cut(s) 58, 403
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 2 cut(s) 120, 377
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 2 cut(s) 61, 406
BstMBI GATC 2 cut(s) 58, 403
BstNSI RCATGY 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 120, 324
Cac8I GCNNGC 1 cut(s) 189
CviAII CATG 3 cut(s) 173, 286, 397
CviJI RGCY 2 cut(s) 130, 198
CviKI_1 RGCY 2 cut(s) 130, 198
DpnI GATC 2 cut(s) 60, 405
DpnII GATC 2 cut(s) 58, 403
Eam1104I CTCTTC 2 cut(s) 120, 377
EarI CTCTTC 2 cut(s) 120, 377
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 3 cut(s) 176, 289, 400
FaiI YATR 7 cut(s) 17, 80, 174, 243, 287, 398, 413
FatI CATG 3 cut(s) 172, 285, 396
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 326
Hin1II CATG 3 cut(s) 176, 289, 400
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 59, 230, 368
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 4 cut(s) 172, 191, 212, 280
Hsp92II CATG 3 cut(s) 176, 289, 400
Kzo9I GATC 2 cut(s) 58, 403
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 3 cut(s) 308, 357, 420
LweI GCATC 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 177
MalI GATC 2 cut(s) 60, 405
MboI GATC 2 cut(s) 58, 403
MboII GAAGA 5 cut(s) 125, 137, 163, 327, 394
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 4 cut(s) 256, 271, 289, 420
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 3 cut(s) 112, 378, 394
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 2 cut(s) 206, 330
MspCI CTTAAG 1 cut(s) 205
NdeII GATC 2 cut(s) 58, 403
NlaIII CATG 3 cut(s) 176, 289, 400
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 25
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 403
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 206, 330
Sau3AI GATC 2 cut(s) 58, 403
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 132, 360
SfaNI GCATC 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 4 cut(s) 256, 271, 289, 420
SspI AATATT 1 cut(s) 94
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 260, 303
TasI AATT 4 cut(s) 256, 271, 289, 420
Tru1I TTAA 2 cut(s) 206, 330
Tru9I TTAA 2 cut(s) 206, 330
TscAI CASTG 2 cut(s) 127, 324
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 4 cut(s) 18, 67, 126, 302
TspRI CASTG 2 cut(s) 127, 324
Vha464I CTTAAG 1 cut(s) 205
XapI RAATTY 3 cut(s) 256, 271, 289
XceI RCATGY 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.