Rorug05G0353700

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000294
Physical Location & Seq
Reverse (-)
44139014 .. 44147056
8043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0353700.1

Sequence Viewer

Length: 2268 bp
ATGGCCGAGATCATGAACATGCCCGTCGATTCCTTGGACCGCCGTCGCGACCGCAAAGACAAGTCTTCCGAAGAGCCTCCTCAATCCTCGCCTCCGCCGCAACAACAACCACCACCCCAGCAACAGCCGCCGCCGCCTCCTCCGCCCTCGCGAAGACGCGACCGCGACGAAAAGGAGAGAGGGGATAGGGACGTCGACCGCCCGCCTCGCCGCCCGGACTACTACGACCGAGGAAATCGCTCCCCTCCGCCTCCGAGGGAGAGAGATAGGGACAGGGATTACAAGCGGCGGGGCAGCCTTAGTCCACCGCCTCCGTATAGGGACCGCAGGCACTCGCCGCCTCGGAGGTCGCCGCCGCCGCCATTTAAGCGGTCGAGGAGGGAAGATGGAGGGTACGACGGCCGGAGAGGGAGTCCCAGAGGTGCCTTTGGACCTGGAGGTGATAGGAGGTCTGGATATGATTATGCAAGTGGATATGAGCGGGAGGTGGGGGGTAGACCTGCTTATGGTGATGACAGGCCTCATGGTCGTTATGCTGGACGCTCGTCTGGTGGCTATGGCCCTTCTGACTGGGATTCAGGACGTGTTGGTTTTGGTGATGCTTCCAGCACTGGGACCACTCAAAGAGAAGGGCTGATGTCATACAAACAATTCATCCAAGAGTTGGAAGATGATATTTTGCCAGCTGAGGCTGAGCGCAGATATCAAGAATACAAGGCAGAGTATATTTCTACTCAGAAGCGAGCTTATTTTAATGCTCATAAAGAAGAGGAATGGCTAAAAGACAAATATCATCCCACAAACCTACTCACTGTAATTGAAAGGAGAAATGAAATAGCACGGAAAACAGCAAAGGATTTCCTGCTTGAACTGCAAAGTGGATCCTTGGACTTAGGCCCAGGTGTCAATCCCTCAGCTCCAAATAAATCTGGACATACTAGTGAACCAAATTCTGATGATGAAGCTGATGCGGATGGCAAGAGAAGACGGCATGGCAGGGAACCAAATAAAGAAAATGATCTTATTTCTACTGCTCCTAAGGCTCACCCAGTCGGTTCTGATCCTAGACGTATACAAGTTGACATTGAACAAGCCCAAGCCCTTGTCCGCAAACTTGACTCGGAAAAAGGAATTGTGGAGAACATTTTATGTGGACCTGATAATGACAAAATGAACAGGGAAAAATCTCATGGTGGTTCCACTGGCCCTGTTGTTATCGTTCGGGGTTTGACATCTGTCAAGGGCCTAGAGGGTGTTGAGCTACTTGACACCCTTATTACTTATCTTTGGCGCATACATGGTGTAGATTATTATGGGATGATTGAGTCAAACGACGCTAAAGGTCTCAGGCATGTGAGAGTAGAGGTAAAGGGTTCCGATATAGGTAGTAATGGAGCTGAGTGGGAAAAGAAATTAGACTTGCATTGGCAAGAGAGATTGCATAGTCAAGATCCCTTGGAAGTAATGACTGCCAAGGAAAAGATAGAAGCTGCTGCTGTTCAAGGCCTAGATCCCTTTGTGCGGAAGATTAGGGATGAAAAGTATGGCTGGAAGTATGGTTGTGGTGCCAAGGGATGCACTAAGCTCTTTCATGCTGCTGAATTTGTACACAAACATCTCAAGTTAAAACACCCTGAGCTACTGGTGGATGTGACTTTGAAAATGCGCGAGGATTTATATTTCCAGAACTACATGAATGATGCAGAGGCGCCAGGTGGAACTCCTATTATGCAGCAATCGATACTGAGGGACAAGCCACAGAGGCGTAGGCCGGGTATGGAGAATAGATTGAAAGATGAGCGTGGTAATCGGAGAGAACGCGAAAACCGAGCTAATGGTGGTGAGAGGTATGATAGGTCTGAGAATATGCAAGGTGAATTCCAGTCTAACAATGATGGTCAAGATGGAGGAAATCATGATGAACCAATGTATGATAATTTTGGTGGACAAGGGATGCATGCTGGTCCTCCTTTCCCATCAGATATACCCCCACCACCTGTATTGATGCCTGTGCCTGGTGCTGGTCCTCTCGGACCTTTTGTTCCTGCTCCACCTGAAGTTGCAATGCAGATGTTGCGAGAGCAAGGTGGTCCTCCACCCTTTGAAGGCAGTGGTAGAAATATGTGGCCTGGACCCCAAATGAGTGGGCCAGCCCCAATTCTTGCTTTGTCTCCAGCTTTTCGACAGGATCCTCGACGTTTAAGAAGTTATCAAGATCTAGATGCACCGGAGGATGAAGTCACAGTGATAGACTACAGGAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

755

Amino Acids

85.21

Weight (kDa)

7.33

Isoelectric Point (pI)

72.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERRATE_Ars2_N PF12066 216 - 297 2.3e-21 SERRATE/Ars2, N-terminal domain
ARS2 PF04959 453 - 660 3.5e-41 Arsenite-resistance protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 508
AccB1I GGYRCC 3 cut(s) 422, 1565, 1708
AccB7I CCANNNNNTGG 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 481
AccI GTMKAC 3 cut(s) 195, 496, 1072
AccII CGCG 6 cut(s) 48, 151, 159, 165, 1668, 1821
AclWI GGATC 7 cut(s) 876, 889, 1055, 1445, 1505, 2183, 2196
AcoI YGGCCR 2 cut(s) 3, 400
AcsI RAATTY 3 cut(s) 949, 1601, 1877
AcuI CTGAAG 1 cut(s) 2076
AcyI GRCGYC 2 cut(s) 192, 1709
AfaI GTAC 2 cut(s) 395, 1608
AfiI CCNNNNNNNGG 7 cut(s) 506, 612, 664, 1521, 2015, 2021, 2105
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 7 cut(s) 821, 869, 1088, 1502, 1660, 1792, 2105
AhlI ACTAGT 1 cut(s) 938
AjiI CACGTC 1 cut(s) 584
AjnI CCWGG 5 cut(s) 433, 898, 1711, 2014, 2128
AloI GAACNNNNNNTCC 2 cut(s) 2025, 2057
Alw26I GTCTC 2 cut(s) 1349, 2175
AlwI GGATC 7 cut(s) 876, 889, 1055, 1445, 1505, 2183, 2196
ApeKI GCWGC 5 cut(s) 294, 1490, 1493, 1595, 1732
ApoI RAATTY 3 cut(s) 949, 1601, 1877
AspLEI GCGC 4 cut(s) 699, 1293, 1668, 1711
AsuC2I CCSGG 2 cut(s) 215, 1773
AsuHPI GGTGA 6 cut(s) 452, 521, 608, 1037, 1853, 1886
AxyI CCTNAGG 1 cut(s) 1038
BamHI GGATCC 2 cut(s) 881, 2188
BanI GGYRCC 3 cut(s) 422, 1565, 1708
BbsI GAAGAC 3 cut(s) 57, 160, 991
BbvCI CCTCAGC 2 cut(s) 687, 913
BbvI GCAGC 5 cut(s) 306, 1477, 1480, 1582, 1744
BccI CCATC 5 cut(s) 380, 968, 1889, 1898, 1984
BceAI ACGGC 3 cut(s) 27, 415, 1004
BciT130I CCWGG 5 cut(s) 435, 900, 1713, 2016, 2130
BcnI CCSGG 2 cut(s) 215, 1773
BcoDI GTCTC 2 cut(s) 1349, 2175
BcuI ACTAGT 1 cut(s) 938
BfaI CTAG 5 cut(s) 939, 1065, 1247, 1508, 2219
BfmI CTRYAG 1 cut(s) 2254
BfoI RGCGCY 1 cut(s) 1712
BfuAI ACCTGC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 1762
BglII AGATCT 1 cut(s) 2215
BlpI GCTNAGC 1 cut(s) 693
Bme1390I CCNGG 7 cut(s) 215, 435, 900, 1713, 1773, 2016, 2130
BmgBI CACGTC 1 cut(s) 584
BmrFI CCNGG 7 cut(s) 215, 435, 900, 1713, 1773, 2016, 2130
BmrI ACTGGG 3 cut(s) 580, 621, 1043
BmsI GCATC 7 cut(s) 589, 958, 1565, 1690, 1944, 1995, 2212
BmuI ACTGGG 3 cut(s) 580, 621, 1043
BoxI GACNNNNGTC 3 cut(s) 42, 544, 1235
BpiI GAAGAC 3 cut(s) 57, 160, 991
BpmI CTGGAG 2 cut(s) 456, 2157
Bpu10I CCTNAGC 3 cut(s) 687, 913, 1635
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 1604
BpuMI CCSGG 2 cut(s) 215, 1773
Bsa29I ATCGAT 1 cut(s) 1739
BsaHI GRCGYC 2 cut(s) 192, 1709
BsaI GGTCTC 1 cut(s) 1349
BsaJI CCNNGG 9 cut(s) 33, 229, 254, 341, 885, 898, 1455, 1473, 1569
BsaWI WCCGGW 1 cut(s) 2227
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 7 cut(s) 506, 612, 664, 1521, 2015, 2021, 2105
Bse1I ACTGG 6 cut(s) 575, 616, 1049, 1207, 1647, 1882
Bse21I CCTNAGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 2070
BseBI CCWGG 5 cut(s) 435, 900, 1713, 2016, 2130
BseCI ATCGAT 1 cut(s) 1739
BseDI CCNNGG 9 cut(s) 33, 229, 254, 341, 885, 898, 1455, 1473, 1569
BseGI GGATG 9 cut(s) 654, 793, 979, 1323, 1540, 1580, 1654, 1959, 2239
BseLI CCNNNNNNNGG 7 cut(s) 506, 612, 664, 1521, 2015, 2021, 2105
BseMI GCAATG 1 cut(s) 2070
BseMII CTCAG 9 cut(s) 678, 684, 749, 927, 1360, 1389, 1626, 1736, 1851
BseNI ACTGG 6 cut(s) 575, 616, 1049, 1207, 1647, 1882
BseRI GAGGAG 3 cut(s) 69, 129, 391
BseX3I CGGCCG 1 cut(s) 400
BseXI GCAGC 5 cut(s) 306, 1477, 1480, 1582, 1744
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 6 cut(s) 48, 151, 159, 165, 1668, 1821
Bsh1285I CGRYCG 6 cut(s) 52, 163, 199, 229, 374, 403
BshNI GGYRCC 3 cut(s) 422, 1565, 1708
BshVI ATCGAT 1 cut(s) 1739
BsiEI CGRYCG 6 cut(s) 52, 163, 199, 229, 374, 403
BsiSI CCGG 4 cut(s) 215, 403, 1772, 2228
BslFI GGGAC 6 cut(s) 203, 284, 335, 399, 628, 1763
BslI CCNNNNNNNGG 7 cut(s) 506, 612, 664, 1521, 2015, 2021, 2105
BsmAI GTCTC 2 cut(s) 1349, 2175
BsmFI GGGAC 6 cut(s) 203, 284, 335, 399, 628, 1763
Bso31I GGTCTC 1 cut(s) 1349
Bsp1407I TGTACA 1 cut(s) 1606
Bsp143I GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
Bsp1720I GCTNAGC 1 cut(s) 693
Bsp68I TCGCGA 2 cut(s) 48, 151
BspCNI CTCAG 9 cut(s) 679, 685, 748, 926, 1359, 1390, 1627, 1737, 1852
BspDI ATCGAT 1 cut(s) 1739
BspFNI CGCG 6 cut(s) 48, 151, 159, 165, 1668, 1821
BspHI TCATGA 2 cut(s) 12, 1915
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 7 cut(s) 876, 889, 1055, 1445, 1505, 2183, 2196
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 3 cut(s) 422, 1565, 1708
BspTNI GGTCTC 1 cut(s) 1349
BsrBI CCGCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 2070
BsrGI TGTACA 1 cut(s) 1606
BsrI ACTGG 6 cut(s) 575, 616, 1049, 1207, 1647, 1882
BssECI CCNNGG 9 cut(s) 33, 229, 254, 341, 885, 898, 1455, 1473, 1569
BssMI GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
BssNAI GTATAC 1 cut(s) 1073
BssNI GRCGYC 2 cut(s) 192, 1709
BssT1I CCWWGG 5 cut(s) 33, 885, 1455, 1473, 1569
Bst1107I GTATAC 1 cut(s) 1073
Bst2UI CCWGG 5 cut(s) 435, 900, 1713, 2016, 2130
Bst4CI ACNGT 2 cut(s) 814, 2245
Bst6I CTCTTC 2 cut(s) 66, 762
BstACI GRCGYC 2 cut(s) 192, 1709
BstAPI GCANNNNNTGC 1 cut(s) 2074
BstAUI TGTACA 1 cut(s) 1606
BstC8I GCNNGC 6 cut(s) 203, 329, 684, 744, 1959, 2151
BstF5I GGATG 9 cut(s) 654, 793, 979, 1323, 1540, 1580, 1654, 1959, 2239
BstFNI CGCG 6 cut(s) 48, 151, 159, 165, 1668, 1821
BstH2I RGCGCY 1 cut(s) 1712
BstHHI GCGC 4 cut(s) 699, 1293, 1668, 1711
BstKTI GATC 8 cut(s) 12, 884, 1021, 1063, 1453, 1513, 2191, 2218
BstMAI GTCTC 2 cut(s) 1349, 2175
BstMBI GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
BstMCI CGRYCG 6 cut(s) 52, 163, 199, 229, 374, 403
BstNI CCWGG 5 cut(s) 435, 900, 1713, 2016, 2130
BstNSI RCATGY 3 cut(s) 22, 1355, 1961
BstPAI GACNNNNGTC 3 cut(s) 42, 544, 1235
BstSCI CCNGG 7 cut(s) 213, 433, 898, 1711, 1771, 2014, 2128
BstSFI CTRYAG 1 cut(s) 2254
BstUI CGCG 6 cut(s) 48, 151, 159, 165, 1668, 1821
BstV1I GCAGC 5 cut(s) 306, 1477, 1480, 1582, 1744
BstV2I GAAGAC 3 cut(s) 57, 160, 991
BstX2I RGATCY 5 cut(s) 881, 1450, 1510, 2188, 2215
BstXI CCANNNNNNTGG 1 cut(s) 2144
BstYI RGATCY 5 cut(s) 881, 1450, 1510, 2188, 2215
BstZ17I GTATAC 1 cut(s) 1073
BstZI CGGCCG 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 1739
Bsu36I CCTNAGG 1 cut(s) 1038
BsuTUI ATCGAT 1 cut(s) 1739
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 9 cut(s) 654, 793, 979, 1323, 1540, 1580, 1654, 1959, 2239
BtsI GCAGTG 1 cut(s) 2116
BtsIMutI CAGTG 5 cut(s) 609, 810, 1200, 2116, 2250
BtuMI TCGCGA 2 cut(s) 48, 151
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 6 cut(s) 203, 329, 684, 744, 1959, 2151
CciI TCATGA 2 cut(s) 12, 1915
CfoI GCGC 4 cut(s) 699, 1293, 1668, 1711
ClaI ATCGAT 1 cut(s) 1739
CseI GACGC 3 cut(s) 165, 549, 1343
Csp6I GTAC 2 cut(s) 394, 1607
CspCI CAANNNNNGTGG 2 cut(s) 1983, 2018
CviQI GTAC 2 cut(s) 394, 1607
DinI GGCGCC 1 cut(s) 1710
DpnI GATC 8 cut(s) 11, 883, 1020, 1062, 1452, 1512, 2190, 2217
DpnII GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
EaeI YGGCCR 2 cut(s) 3, 400
EagI CGGCCG 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 66, 762
EarI CTCTTC 2 cut(s) 66, 762
EciI GGCGGA 3 cut(s) 84, 132, 237
EclXI CGGCCG 1 cut(s) 400
Eco130I CCWWGG 5 cut(s) 33, 885, 1455, 1473, 1569
Eco147I AGGCCT 2 cut(s) 520, 1506
Eco31I GGTCTC 1 cut(s) 1349
Eco32I GATATC 1 cut(s) 704
Eco52I CGGCCG 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 2076
Eco81I CCTNAGG 1 cut(s) 1038
EcoO109I RGGNCCY 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 1877
EcoRII CCWGG 5 cut(s) 433, 898, 1711, 2014, 2128
EcoRV GATATC 1 cut(s) 704
EcoT14I CCWWGG 5 cut(s) 33, 885, 1455, 1473, 1569
EcoT22I ATGCAT 1 cut(s) 1959
EgeI GGCGCC 1 cut(s) 1710
EheI GGCGCC 1 cut(s) 1710
ErhI CCWWGG 5 cut(s) 33, 885, 1455, 1473, 1569
FaqI GGGAC 6 cut(s) 203, 284, 335, 399, 628, 1763
FauI CCCGC 3 cut(s) 210, 282, 474
FblI GTMKAC 3 cut(s) 195, 496, 1072
FokI GGATG 9 cut(s) 641, 780, 986, 1330, 1547, 1587, 1661, 1966, 2246
FspBI CTAG 5 cut(s) 939, 1065, 1247, 1508, 2219
GlaI GCGC 4 cut(s) 698, 1292, 1667, 1710
GsaI CCCAGC 1 cut(s) 121
GsuI CTGGAG 2 cut(s) 456, 2157
HaeII RGCGCY 1 cut(s) 1712
HapII CCGG 4 cut(s) 215, 403, 1772, 2228
HgaI GACGC 3 cut(s) 165, 549, 1343
HhaI GCGC 4 cut(s) 699, 1293, 1668, 1711
Hin1I GRCGYC 2 cut(s) 192, 1709
Hin6I GCGC 4 cut(s) 697, 1291, 1666, 1709
HinP1I GCGC 4 cut(s) 697, 1291, 1666, 1709
HincII GTYRAC 2 cut(s) 196, 1081
HindII GTYRAC 2 cut(s) 196, 1081
HinfI GANTC 5 cut(s) 29, 412, 575, 1118, 1325
HpaII CCGG 4 cut(s) 215, 403, 1772, 2228
HphI GGTGA 6 cut(s) 452, 521, 608, 1037, 1853, 1886
Hpy166II GTNNAC 9 cut(s) 196, 305, 497, 944, 1073, 1081, 1154, 1609, 1946
Hpy8I GTNNAC 9 cut(s) 196, 305, 497, 944, 1073, 1081, 1154, 1609, 1946
Hpy99I CGWCG 7 cut(s) 29, 48, 170, 197, 401, 1337, 2199
HpyAV CCTTC 3 cut(s) 573, 623, 2099
HpyCH4III ACNGT 2 cut(s) 814, 2245
HpyCH4IV ACGT 4 cut(s) 192, 583, 1069, 2197
HpySE526I ACGT 4 cut(s) 192, 583, 1069, 2197
Hsp92I GRCGYC 2 cut(s) 192, 1709
HspAI GCGC 4 cut(s) 697, 1291, 1666, 1709
KasI GGCGCC 1 cut(s) 1708
Kzo9I GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 6 cut(s) 245, 922, 1039, 1394, 2053, 2259
Lsp1109I GCAGC 5 cut(s) 306, 1477, 1480, 1582, 1744
LweI GCATC 7 cut(s) 589, 958, 1565, 1690, 1944, 1995, 2212
MaeI CTAG 5 cut(s) 939, 1065, 1247, 1508, 2219
MaeII ACGT 4 cut(s) 192, 583, 1069, 2197
MaeIII GTNAC 2 cut(s) 1651, 2239
MalI GATC 8 cut(s) 11, 883, 1020, 1062, 1452, 1512, 2190, 2217
MbiI CCGCTC 1 cut(s) 481
MboI GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
MboII GAAGA 8 cut(s) 57, 83, 165, 395, 680, 779, 996, 1537
MflI RGATCY 5 cut(s) 881, 1450, 1510, 2188, 2215
MluCI AATT 9 cut(s) 650, 816, 949, 1131, 1412, 1601, 1877, 1936, 2157
Mly113I GGCGCC 1 cut(s) 1709
MlyI GAGTC 3 cut(s) 421, 1112, 1334
MmeI TCCRAC 1 cut(s) 645
Mph1103I ATGCAT 1 cut(s) 1959
MseI TTAA 4 cut(s) 366, 753, 1625, 2201
MslI CAYNNNNRTG 2 cut(s) 17, 939
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 4 cut(s) 215, 403, 1772, 2228
MspR9I CCNGG 7 cut(s) 215, 435, 900, 1713, 1773, 2016, 2130
MvaI CCWGG 5 cut(s) 435, 900, 1713, 2016, 2130
MvnI CGCG 6 cut(s) 48, 151, 159, 165, 1668, 1821
NarI GGCGCC 1 cut(s) 1709
NciI CCSGG 2 cut(s) 215, 1773
NdeII GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 1651, 2239
NruI TCGCGA 2 cut(s) 48, 151
NsiI ATGCAT 1 cut(s) 1959
NspI RCATGY 3 cut(s) 22, 1355, 1961
PaeI GCATGC 1 cut(s) 1961
PagI TCATGA 2 cut(s) 12, 1915
PceI AGGCCT 2 cut(s) 520, 1506
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 1825
PfeI GAWTC 2 cut(s) 29, 575
PflMI CCANNNNNTGG 1 cut(s) 664
PleI GAGTC 3 cut(s) 420, 1112, 1333
PluTI GGCGCC 1 cut(s) 1712
PpsI GAGTC 3 cut(s) 420, 1112, 1333
PshAI GACNNNNGTC 3 cut(s) 42, 544, 1235
Psp6I CCWGG 5 cut(s) 433, 898, 1711, 2014, 2128
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 5 cut(s) 433, 898, 1711, 2014, 2128
PsuI RGATCY 5 cut(s) 881, 1450, 1510, 2188, 2215
PvuII CAGCTG 1 cut(s) 686
RruI TCGCGA 2 cut(s) 48, 151
RsaI GTAC 2 cut(s) 395, 1608
RsaNI GTAC 2 cut(s) 394, 1607
RseI CAYNNNNRTG 2 cut(s) 17, 939
SalI GTCGAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 366, 753, 1625, 2201
Sau3AI GATC 8 cut(s) 9, 881, 1018, 1060, 1450, 1510, 2188, 2215
SchI GAGTC 3 cut(s) 421, 1112, 1334
ScrFI CCNGG 7 cut(s) 215, 435, 900, 1713, 1773, 2016, 2130
SfaNI GCATC 7 cut(s) 589, 958, 1565, 1690, 1944, 1995, 2212
SfcI CTRYAG 1 cut(s) 2254
SfoI GGCGCC 1 cut(s) 1710
SmiMI CAYNNNNRTG 2 cut(s) 17, 939
SmlI CTYRAG 1 cut(s) 1619
SmoI CTYRAG 1 cut(s) 1619
SpeI ACTAGT 1 cut(s) 938
SphI GCATGC 1 cut(s) 1961
Sse9I AATT 9 cut(s) 650, 816, 949, 1131, 1412, 1601, 1877, 1936, 2157
SseBI AGGCCT 2 cut(s) 520, 1506
SspDI GGCGCC 1 cut(s) 1708
SspMI CTAG 5 cut(s) 939, 1065, 1247, 1508, 2219
StuI AGGCCT 2 cut(s) 520, 1506
StyD4I CCNGG 7 cut(s) 213, 433, 898, 1711, 1771, 2014, 2128
StyI CCWWGG 5 cut(s) 33, 885, 1455, 1473, 1569
TaaI ACNGT 2 cut(s) 814, 2245
TaiI ACGT 4 cut(s) 195, 586, 1072, 2200
TaqI TCGA 6 cut(s) 27, 195, 374, 1739, 2182, 2194
TaqII GACCGA 1 cut(s) 243
TasI AATT 9 cut(s) 650, 816, 949, 1131, 1412, 1601, 1877, 1936, 2157
TatI WGTACW 1 cut(s) 1606
TfiI GAWTC 2 cut(s) 29, 575
Tru1I TTAA 4 cut(s) 366, 753, 1625, 2201
Tru9I TTAA 4 cut(s) 366, 753, 1625, 2201
TscAI CASTG 5 cut(s) 616, 817, 1207, 2116, 2250
TseFI GTSAC 2 cut(s) 1651, 2239
TseI GCWGC 5 cut(s) 294, 1490, 1493, 1595, 1732
Tsp45I GTSAC 2 cut(s) 1651, 2239
TspGWI ACGGA 2 cut(s) 303, 856
TspRI CASTG 5 cut(s) 616, 817, 1207, 2116, 2250
Van91I CCANNNNNTGG 1 cut(s) 664
XapI RAATTY 3 cut(s) 949, 1601, 1877
XbaI TCTAGA 1 cut(s) 2218
XceI RCATGY 3 cut(s) 22, 1355, 1961
XmiI GTMKAC 3 cut(s) 195, 496, 1072
XspI CTAG 5 cut(s) 939, 1065, 1247, 1508, 2219
ZraI GACGTC 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 1959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.