Rh1BG136100

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22709527 .. 22711239
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG136100.1

Sequence Viewer

Length: 1035 bp
ATGTATACAAACCAGACATATGATGCTGTTGCTGGAGATATGACGATCACATCGAATAGATCTTTGTATGTTGATTTTACAATACCATTTACTGACATGGGGGTGGGAATCTTAGTAAGGAATGAAAAGGAAAACATGTGGGTTTTCTTGGAACCTCTGTCAGCAAATCTTTGGATGACATGTGGTGGTTTTTTTATCCTAACGGGTTTTGTTGTGTGGATAATTGAGCGTCCTGCAAACCAAGAGTTCCAGGGATCAACATCGCAGCAACTTGGAACAATATTCTGGTTCTCCTTCTCAACCCTTGTGTTTTCTCATAGGGAAAAGTTGTTGAATAACTTGGCCAAGTTTGTCACGATCGTCTGGGTTTTTGTAGTGCTTATATTGACATCCAGTTATACTGCAACTTTAGCATCAATGCTGACAGTTAAACAGATAAATTTAAACTCAAGAGGTAACAATATAGCTGACCTTGTGATTTTTGGAGGGCCGAAGCATAAGTTGTATCATACAGTTGAACAATTTGCTGATGCTTTATCAAGAGGAAGTAAGCATGGTGGTGTTTCTGCTATCATCGAAGAGATCCCATACCTCAAAATCTTCCTAGAAAAGTATCCTGCTGACTACTCCATGATTAAACCCAAGTTAACTACCAATGGTTTTGGCTTTATTTTTCCTAAAGGTTCTAAATTAGTCCGTGACATGTCGAGGCAAATTGAAATTTTAAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCAGATCTCAGATGCAGTGAATAGTCCTAATCCTGGTACTCTTAACCTCAGCAGCTTTCTAGGTTTATTCCTTGTTAGTGGCGTTTCTTCAGTTGCTGCTCTTATATTATTCTTCATTTTGTCCCTCAAAGATAGATGGCATGTCCTAAAGATAAGCACAGCTAGATCCCTGGGTAGAGGACAGCTGATGCAACTTATAAGAAGGTCCCTTTCTAACAAAGTATCCAATGCAGATGAACACATCAATACACAGATAGTGGATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

344

Amino Acids

38.68

Weight (kDa)

9.02

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP_bac_3 PF00497 3 - 257 4.7e-11 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 4 - 42 2.1e-06 Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan PF00060 55 - 284 1.6e-29 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 965
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 3 cut(s) 262, 577, 927
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 2 cut(s) 439, 720
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 1 cut(s) 800
AflIII ACRYGT 3 cut(s) 135, 179, 702
AgsI TTSAA 3 cut(s) 334, 518, 719
AjnI CCWGG 4 cut(s) 249, 761, 799, 936
AluBI AGCT 5 cut(s) 467, 742, 822, 929, 952
AluI AGCT 5 cut(s) 467, 742, 822, 929, 952
AlwI GGATC 3 cut(s) 262, 577, 927
AlwNI CAGNNNCTG 1 cut(s) 863
AoxI GGCC 3 cut(s) 342, 488, 759
ApeKI GCWGC 3 cut(s) 265, 819, 863
ApoI RAATTY 2 cut(s) 439, 720
AspS9I GGNCC 2 cut(s) 488, 972
AvaII GGWCC 1 cut(s) 972
BalI TGGCCA 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 3 cut(s) 277, 831, 850
BccI CCATC 2 cut(s) 745, 897
BciT130I CCWGG 4 cut(s) 251, 763, 801, 938
BciVI GTATCC 2 cut(s) 624, 1000
BfaI CTAG 3 cut(s) 605, 827, 930
BfuI GTATCC 2 cut(s) 624, 1000
BglII AGATCT 2 cut(s) 59, 771
BisI GCNGC 3 cut(s) 266, 820, 864
BlsI GCNGC 3 cut(s) 267, 821, 865
Bme1390I CCNGG 4 cut(s) 251, 763, 801, 938
Bme18I GGWCC 1 cut(s) 972
BmgT120I GGNCC 2 cut(s) 488, 972
BmiI GGNNCC 2 cut(s) 153, 974
BmrFI CCNGG 4 cut(s) 251, 763, 801, 938
BmsI GCATC 5 cut(s) 13, 422, 520, 769, 945
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 815
BpuEI CTTGAG 1 cut(s) 433
BsaBI GATNNNNATC 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 250, 936, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 259
BseBI CCWGG 4 cut(s) 251, 763, 801, 938
BseDI CCNNGG 3 cut(s) 250, 936, 937
BseGI GGATG 2 cut(s) 180, 389
BseJI GATNNNNATC 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMII CTCAG 2 cut(s) 789, 829
BseNI ACTGG 1 cut(s) 393
BseXI GCAGC 3 cut(s) 277, 831, 850
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 3 cut(s) 344, 490, 761
BsiEI CGRYCG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 874, 958
BslI CCNNNNNNNGG 1 cut(s) 800
BsmFI GGGAC 2 cut(s) 874, 958
BsnI GGCC 3 cut(s) 344, 490, 761
Bsp143I GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
BspANI GGCC 3 cut(s) 344, 490, 761
BspCNI CTCAG 2 cut(s) 788, 828
BspLI GGNNCC 2 cut(s) 153, 974
BspPI GGATC 3 cut(s) 262, 577, 927
BsrI ACTGG 1 cut(s) 393
BssECI CCNNGG 3 cut(s) 250, 936, 937
BssMI GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 4 cut(s) 251, 763, 801, 938
Bst4CI ACNGT 2 cut(s) 427, 514
Bst6I CTCTTC 1 cut(s) 573
BstDEI CTNAG 3 cut(s) 112, 775, 815
BstF5I GGATG 2 cut(s) 180, 389
BstKTI GATC 7 cut(s) 48, 62, 257, 360, 585, 774, 935
BstMBI GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 4 cut(s) 251, 763, 801, 938
BstNSI RCATGY 4 cut(s) 139, 183, 706, 911
BstSCI CCNGG 4 cut(s) 249, 761, 799, 936
BstV1I GCAGC 3 cut(s) 277, 831, 850
BstX2I RGATCY 4 cut(s) 59, 582, 771, 932
BstYI RGATCY 4 cut(s) 59, 582, 771, 932
BstZ17I GTATAC 1 cut(s) 6
BsuI GTATCC 2 cut(s) 624, 1000
BsuRI GGCC 3 cut(s) 344, 490, 761
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 180, 389
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 1 cut(s) 789
CaiI CAGNNNCTG 1 cut(s) 863
Cfr13I GGNCC 2 cut(s) 488, 972
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 804
CviAII CATG 7 cut(s) 97, 136, 180, 554, 631, 703, 908
CviJI RGCY 9 cut(s) 344, 467, 490, 666, 742, 761, 822, 929, 952
CviKI_1 RGCY 9 cut(s) 344, 467, 490, 666, 742, 761, 822, 929, 952
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 3 cut(s) 112, 775, 815
DpnI GATC 7 cut(s) 47, 61, 256, 359, 584, 773, 934
DpnII GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco147I AGGCCT 1 cut(s) 761
Eco47I GGWCC 1 cut(s) 972
Eco57I CTGAAG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 972
EcoRII CCWGG 4 cut(s) 249, 761, 799, 936
FaeI CATG 7 cut(s) 100, 139, 183, 557, 634, 706, 911
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 2 cut(s) 874, 958
FatI CATG 7 cut(s) 96, 135, 179, 553, 630, 702, 907
FauNDI CATATG 1 cut(s) 19
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 266, 820, 864
FokI GGATG 2 cut(s) 187, 376
Fsp4HI GCNGC 3 cut(s) 266, 820, 864
FspBI CTAG 3 cut(s) 605, 827, 930
GluI GCNGC 3 cut(s) 266, 820, 864
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 3 cut(s) 344, 490, 761
HgaI GACGC 1 cut(s) 218
Hin1II CATG 7 cut(s) 100, 139, 183, 557, 634, 706, 911
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 2 cut(s) 108, 1028
HpaI GTTAAC 1 cut(s) 648
Hpy166II GTNNAC 2 cut(s) 6, 648
Hpy188I TCNGA 2 cut(s) 771, 778
Hpy188III TCNNGA 3 cut(s) 355, 450, 540
Hpy8I GTNNAC 2 cut(s) 6, 648
HpyAV CCTTC 3 cut(s) 304, 728, 963
HpyCH4III ACNGT 2 cut(s) 427, 514
HpyCH4V TGCA 5 cut(s) 236, 404, 782, 958, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 3 cut(s) 112, 775, 815
Hsp92II CATG 7 cut(s) 100, 139, 183, 557, 634, 706, 911
KspAI GTTAAC 1 cut(s) 648
Kzo9I GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
Lsp1109I GCAGC 3 cut(s) 277, 831, 850
LweI GCATC 5 cut(s) 13, 422, 520, 769, 945
MaeI CTAG 3 cut(s) 605, 827, 930
MaeIII GTNAC 3 cut(s) 352, 455, 698
MalI GATC 7 cut(s) 47, 61, 256, 359, 584, 773, 934
MboI GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
MboII GAAGA 5 cut(s) 590, 592, 743, 846, 871
MflI RGATCY 4 cut(s) 59, 582, 771, 932
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 6 cut(s) 222, 439, 521, 689, 714, 720
MluNI TGGCCA 1 cut(s) 344
MnlI CCTC 9 cut(s) 165, 446, 479, 536, 602, 702, 824, 902, 938
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 6 cut(s) 429, 443, 636, 647, 725, 810
MslI CAYNNNNRTG 2 cut(s) 101, 558
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 952
MspR9I CCNGG 4 cut(s) 251, 763, 801, 938
MvaI CCWGG 4 cut(s) 251, 763, 801, 938
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeI CATATG 1 cut(s) 19
NdeII GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
NlaIII CATG 7 cut(s) 100, 139, 183, 557, 634, 706, 911
NlaIV GGNNCC 2 cut(s) 153, 974
NmuCI GTSAC 2 cut(s) 352, 698
NspI RCATGY 4 cut(s) 139, 183, 706, 911
PasI CCCWGGG 1 cut(s) 937
PceI AGGCCT 1 cut(s) 761
PciI ACATGT 3 cut(s) 135, 179, 702
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 2 cut(s) 108, 1028
PkrI GCNGC 3 cut(s) 267, 821, 865
Ple19I CGATCG 1 cut(s) 360
PpuMI RGGWCCY 1 cut(s) 972
PscI ACATGT 3 cut(s) 135, 179, 702
PsiI TTATAA 1 cut(s) 965
Psp5II RGGWCCY 1 cut(s) 972
Psp6I CCWGG 4 cut(s) 249, 761, 799, 936
PspGI CCWGG 4 cut(s) 249, 761, 799, 936
PspN4I GGNNCC 2 cut(s) 153, 974
PspPI GGNCC 2 cut(s) 488, 972
PspPPI RGGWCCY 1 cut(s) 972
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 4 cut(s) 59, 582, 771, 932
PvuI CGATCG 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 2 cut(s) 101, 558
SaqAI TTAA 6 cut(s) 429, 443, 636, 647, 725, 810
SatI GCNGC 3 cut(s) 266, 820, 864
Sau3AI GATC 7 cut(s) 45, 59, 254, 357, 582, 771, 932
Sau96I GGNCC 2 cut(s) 488, 972
ScrFI CCNGG 4 cut(s) 251, 763, 801, 938
SfaNI GCATC 5 cut(s) 13, 422, 520, 769, 945
SinI GGWCC 1 cut(s) 972
SmiMI CAYNNNNRTG 2 cut(s) 101, 558
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 6 cut(s) 222, 439, 521, 689, 714, 720
SseBI AGGCCT 1 cut(s) 761
SspI AATATT 1 cut(s) 282
SspMI CTAG 3 cut(s) 605, 827, 930
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 4 cut(s) 249, 761, 799, 936
TaaI ACNGT 2 cut(s) 427, 514
TaqI TCGA 3 cut(s) 53, 576, 707
TasI AATT 6 cut(s) 222, 439, 521, 689, 714, 720
TfiI GAWTC 2 cut(s) 108, 1028
Tru1I TTAA 6 cut(s) 429, 443, 636, 647, 725, 810
Tru9I TTAA 6 cut(s) 429, 443, 636, 647, 725, 810
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 2 cut(s) 352, 698
TseI GCWGC 3 cut(s) 265, 819, 863
Tsp45I GTSAC 2 cut(s) 352, 698
TspDTI ATGAA 4 cut(s) 138, 871, 1017, 1020
TspGWI ACGGA 1 cut(s) 686
TspRI CASTG 1 cut(s) 789
VpaK11BI GGWCC 1 cut(s) 972
XapI RAATTY 2 cut(s) 439, 720
XceI RCATGY 4 cut(s) 139, 183, 706, 911
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 605, 827, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.