Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000294

Physical Location & Seq

Genomic Coordinates Forward (+)

68805087 .. 68805755

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33922

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTATATAACAGGGAAATTGTCAAACAATTTGGCAAAGTTTGTAGTGATCATATGGGTGTTTATAGTGCTTATATTGACATCCAGTTACACTGCTACTTTAGCATCAATGATGACAGTAAAACAGATTCACTTAAATTCAATAGGGAACAATATAGGTTACCAATCAGGTTCACTAGGAGCTATAGTGAACTTCAATATTGCAGGGAATCATTCATATATTTCAGCTGAAGACTATTTTGATGCTTTATCCAAAGGAAGCAAGCATGGTGGTGTCGCTGGGATTATTGACGAAGTTCCTTACATCAACATCTTCCTTGGAAAGTATACTGATGATGATTTCTCAATGATTAAAACCAGTTCTTACACCAATGGTTTTGCCTTTGTAAGTAATCTCTCCCTTATGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005267 GO:0005272 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006816 GO:0006873 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0019722 GO:0019725 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0033993 GO:0034220 GO:0035556 GO:0035725 GO:0038023 GO:0042221 GO:0042592 GO:0043200 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

136

Amino Acids

14.8

Weight (kDa)

6.23

Isoelectric Point (pI)

20.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	7 - 44	6.8e-11	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca	FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica	MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica	Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis	pycom02g20100 pycom07g06420
rosa_chinensis	RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata	RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora	Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa	Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha	Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana	Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	141, 196
AluBI	AGCT	2 cut(s)	182, 227
AluI	AGCT	2 cut(s)	182, 227
ApoI	RAATTY	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	113, 232
BpiI	GAAGAC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse1I	ACTGG	2 cut(s)	84, 357
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	84, 357
BseYI	CCCAGC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	84, 357
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	48
BssNAI	GTATAC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	237
BstZ17I	GTATAC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	2 cut(s)	182, 227
CviKI_1	RGCY	2 cut(s)	182, 227
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	269
FatI	CATG	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	326
FokI	GGATG	1 cut(s)	67
FspBI	CTAG	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	2 cut(s)	127, 208
Hpy166II	GTNNAC	3 cut(s)	173, 190, 327
Hpy8I	GTNNAC	3 cut(s)	173, 190, 327
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	5 cut(s)	97, 153, 189, 264, 370
LweI	GCATC	2 cut(s)	113, 232
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	86, 158
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	242, 304
MluCI	AATT	3 cut(s)	17, 28, 136
MseI	TTAA	2 cut(s)	134, 351
MslI	CAYNNNNRTG	2 cut(s)	56, 270
MspA1I	CMGCKG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	127, 208
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	56, 270
SaqAI	TTAA	2 cut(s)	134, 351
Sau3AI	GATC	1 cut(s)	48
SetI	ASST	4 cut(s)	160, 172, 184, 229
SfaNI	GCATC	2 cut(s)	113, 232
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	56, 270
Sse9I	AATT	3 cut(s)	17, 28, 136
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	3 cut(s)	17, 28, 136
TfiI	GAWTC	2 cut(s)	127, 208
Tru1I	TTAA	2 cut(s)	134, 351
Tru9I	TTAA	2 cut(s)	134, 351
TscAI	CASTG	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.