Rh1DG168200

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000294
Physical Location & Seq
Forward (+)
34519952 .. 34522700
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG168200.1

Sequence Viewer

Length: 654 bp
ATGAAGCAATTGATCCATGGGAAACCGTCGACTCCGATTCGCATCCGGAACGGGAAGACCCGAGGCTTCAGCGACCGAACGACGACGACCTCTTGCTCCAGAAGCTTTCGCCTCTCCGGTACCGCCACGGCGACGTCGTCGTCGGCTCCGTCACCATCATCCACTCGAATTCGAACGAGAGAAATCGAGTGGGTGATAATTGGTGAATATGGGATTGTACAGTATCAGGTTCATGTTGGTGTGATTCTCGATATGGAATCAAGGGAAGGAAAGATTGTTCTCAGCTGCATTTCAATGGCCCTCTCTGATTTTTACCATCTGCACTATAACTACACGACAAGAATAGTTCTCTACAGTAAGGATTCCAAAGGTGAACCTCTGCCTGCTCTGTCAGCTGCTCTTGACTTTTTGGAAAATTTCAAAGTGGAAGTAATAATTGGTGCACCAAAAAGAGCAGAAGCAAATCTTCTGGCAGAATTAGGAGAAGCGGCCAAACTCCCTTTAATGTCTCTGTCTCCTGTTCGGACTGACAATAAATATCCCTTCTTTGTTGAGATCATGAGCGCTGATGAAGCGGCTGAAGTTAAGGGAATTAGTGCCATCATTGAAGTTTTCAAATGGAGGGATGTTATCCTTTTATATGATAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

217

Amino Acids

24.19

Weight (kDa)

9.02

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 95 - 215 3.6e-18 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AatII GACGTC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 123, 488, 575
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 2 cut(s) 168, 415
AcuI CTGAAG 2 cut(s) 52, 600
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 2 cut(s) 121, 219
AfeI AGCGCT 1 cut(s) 565
AgsI TTSAA 4 cut(s) 294, 421, 608, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 3 cut(s) 105, 285, 395
AluI AGCT 3 cut(s) 105, 285, 395
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 513, 519
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 1 cut(s) 7
Ama87I CYCGRG 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 45
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 2 cut(s) 297, 489
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 285, 395
ApoI RAATTY 2 cut(s) 168, 415
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 4 cut(s) 144, 205, 215, 383
AsuII TTCGAA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 272, 382
BccI CCATC 3 cut(s) 163, 324, 608
BceAI ACGGC 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 513, 519
BfmI CTRYAG 1 cut(s) 352
BfoI RGCGCY 1 cut(s) 567
BisI GCNGC 4 cut(s) 286, 396, 489, 576
BlsI GCNGC 4 cut(s) 287, 397, 490, 577
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 121, 147
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 16, 61, 126
BsaWI WCCGGW 2 cut(s) 45, 116
Bse8I GATNNNNATC 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 16, 61, 126
BseGI GGATG 3 cut(s) 42, 158, 631
BseJI GATNNNNATC 1 cut(s) 41
BseMII CTCAG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 272, 382
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 299, 491
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 46, 117
BsmAI GTCTC 2 cut(s) 513, 519
BsnI GGCC 2 cut(s) 299, 491
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 445
Bsp13I TCCGGA 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 2 cut(s) 12, 555
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 3 cut(s) 123, 488, 575
BspANI GGCC 2 cut(s) 299, 491
BspCNI CTCAG 1 cut(s) 294
BspEI TCCGGA 1 cut(s) 45
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 121, 147
BspPI GGATC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 16, 61, 126
BssMI GATC 2 cut(s) 12, 555
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 3 cut(s) 27, 222, 356
BstACI GRCGYC 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 2 cut(s) 16, 126
BstF5I GGATG 3 cut(s) 42, 158, 631
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 2 cut(s) 15, 558
BstMAI GTCTC 2 cut(s) 513, 519
BstMBI GATC 2 cut(s) 12, 555
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 102, 392, 572
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 272, 382
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 299, 491
BtgI CCRYGG 2 cut(s) 16, 126
BtsCI GGATG 3 cut(s) 42, 158, 631
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 558
CfoI GCGC 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 120, 218
CviAII CATG 3 cut(s) 17, 233, 559
CviJI RGCY 8 cut(s) 66, 105, 146, 285, 299, 395, 491, 578
CviKI_1 RGCY 8 cut(s) 66, 105, 146, 285, 299, 395, 491, 578
CviQI GTAC 2 cut(s) 120, 218
DdeI CTNAG 1 cut(s) 281
DpnI GATC 2 cut(s) 14, 557
DpnII GATC 2 cut(s) 12, 555
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 565
Eco57I CTGAAG 2 cut(s) 52, 600
Eco88I CYCGRG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 3 cut(s) 20, 236, 562
FaiI YATR 8 cut(s) 18, 210, 234, 254, 327, 560, 640, 642
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 3 cut(s) 16, 232, 558
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 286, 396, 489, 576
FokI GGATG 3 cut(s) 29, 145, 638
Fsp4HI GCNGC 4 cut(s) 286, 396, 489, 576
GlaI GCGC 1 cut(s) 565
GluI GCNGC 4 cut(s) 286, 396, 489, 576
GsuI CTGGAG 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 2 cut(s) 299, 491
HapII CCGG 2 cut(s) 46, 117
HhaI GCGC 1 cut(s) 566
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 20, 236, 562
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 5 cut(s) 31, 37, 244, 257, 362
HpaII CCGG 2 cut(s) 46, 117
HphI GGTGA 4 cut(s) 144, 205, 215, 383
Hpy166II GTNNAC 3 cut(s) 30, 374, 443
Hpy188I TCNGA 3 cut(s) 36, 307, 525
Hpy188III TCNNGA 5 cut(s) 46, 99, 248, 401, 559
Hpy8I GTNNAC 3 cut(s) 30, 374, 443
Hpy99I CGWCG 7 cut(s) 31, 85, 88, 136, 139, 142, 145
HpyAV CCTTC 2 cut(s) 260, 553
HpyCH4III ACNGT 3 cut(s) 27, 222, 356
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 288, 322, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 392, 572
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 20, 236, 562
HspAI GCGC 1 cut(s) 564
Kpn2I TCCGGA 1 cut(s) 45
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 12, 555
LmnI GCTCC 2 cut(s) 101, 151
LpnPI CCDG 7 cut(s) 59, 112, 130, 212, 396, 455, 531
Lsp1109I GCAGC 2 cut(s) 272, 382
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 14, 557
MboI GATC 2 cut(s) 12, 555
MboII GAAGA 2 cut(s) 67, 458
MfeI CAATTG 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 7 cut(s) 8, 168, 198, 415, 435, 476, 591
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 6 cut(s) 56, 100, 122, 311, 387, 615
MroI TCCGGA 1 cut(s) 45
MseI TTAA 2 cut(s) 503, 585
MslI CAYNNNNRTG 2 cut(s) 237, 293
MspA1I CMGCKG 2 cut(s) 285, 395
MspI CCGG 2 cut(s) 46, 117
MunI CAATTG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 102, 392, 572
NcoI CCATGG 1 cut(s) 16
NdeII GATC 2 cut(s) 12, 555
NlaIII CATG 3 cut(s) 20, 236, 562
NlaIV GGNNCC 2 cut(s) 121, 147
NmuCI GTSAC 1 cut(s) 150
NspV TTCGAA 1 cut(s) 172
PagI TCATGA 1 cut(s) 558
PcsI WCGNNNNNNNCGW 2 cut(s) 134, 146
PfeI GAWTC 4 cut(s) 37, 244, 257, 362
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 287, 397, 490, 577
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 121, 147
PspPI GGNCC 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 2 cut(s) 285, 395
RsaI GTAC 2 cut(s) 121, 219
RsaNI GTAC 2 cut(s) 120, 218
RseI CAYNNNNRTG 2 cut(s) 237, 293
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 503, 585
SatI GCNGC 4 cut(s) 286, 396, 489, 576
Sau3AI GATC 2 cut(s) 12, 555
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 445
SetI ASST 8 cut(s) 92, 107, 137, 231, 287, 373, 379, 397
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 237, 293
Sse9I AATT 7 cut(s) 8, 168, 198, 415, 435, 476, 591
SsiI CCGC 3 cut(s) 123, 488, 575
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 3 cut(s) 27, 222, 356
TaiI ACGT 1 cut(s) 137
TaqI TCGA 5 cut(s) 29, 166, 172, 186, 249
TaqII GACCGA 1 cut(s) 90
TasI AATT 7 cut(s) 8, 168, 198, 415, 435, 476, 591
TatI WGTACW 1 cut(s) 217
TauI GCSGC 2 cut(s) 491, 578
TfiI GAWTC 4 cut(s) 37, 244, 257, 362
Tru1I TTAA 2 cut(s) 503, 585
Tru9I TTAA 2 cut(s) 503, 585
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 2 cut(s) 285, 395
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 17, 221, 585
TspGWI ACGGA 1 cut(s) 138
Tth111I GACNNNGTC 1 cut(s) 136
VneI GTGCAC 1 cut(s) 441
XapI RAATTY 2 cut(s) 168, 415
XmiI GTMKAC 1 cut(s) 29
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.