Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001055.1

Orthogroup ID

OG0000294

Physical Location & Seq

Genomic Coordinates Forward (+)

44323 .. 45261

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001055.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggagttcccttggaagaagcaaaccatcctatgcctcaccttcttttgcctcctgctgggtgatttctatgctgcaactgacgagaatgtgcatcataatacacccattatcacggaagaagcagtccatgtgggcgcgattcttgatatgagatcaagagaaggaagtattgtcctcagttgcatttccatggccctctctgatttctactatcagcatagtaactacagcacacgagtcattctacacagcagggattcaaaaggaaacccactgcatgctgtttgggctgatcggaaaacactcagactctctctccctccctccctccctctctcccccacagcacgatgcctacactaccgcgccatggtggctccggacccggaggacgagatcggagctttcttccagtctgctttctggtgtctagtaaattctttctggtcgaacaacggctctgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005267 GO:0005272 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006816 GO:0006873 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0019722 GO:0019725 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0033993 GO:0034220 GO:0035556 GO:0035725 GO:0038023 GO:0042221 GO:0042592 GO:0043200 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

156

Amino Acids

17.68

Weight (kDa)

5.93

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca	FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica	MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica	Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis	pycom02g20100 pycom07g06420
rosa_chinensis	RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata	RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora	Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa	Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha	Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana	Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	140, 369
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	58, 373
AgsI	TTSAA	1 cut(s)	264
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	439
AspLEI	GCGC	2 cut(s)	140, 371
AspS9I	GGNCC	2 cut(s)	196, 385
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	31, 74
AvaII	GGWCC	1 cut(s)	385
BauI	CACGAG	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	2 cut(s)	434, 469
BfmI	CTRYAG	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	196, 385
BmiI	GGNNCC	2 cut(s)	381, 387
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	103, 344
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	11, 192, 372
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 373
Bse1I	ACTGG	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	11, 192, 372
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	58, 373
BseMII	CTCAG	2 cut(s)	193, 322
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	140, 369
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	383, 389
BslI	CCNNNNNNNGG	2 cut(s)	58, 373
BsnI	GGCC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	155, 295, 399
Bsp19I	CCATGG	2 cut(s)	192, 372
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	192, 321
BspEI	TCCGGA	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	140, 369
BspLI	GGNNCC	2 cut(s)	381, 387
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	3 cut(s)	11, 192, 372
BssMI	GATC	3 cut(s)	155, 295, 399
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	3 cut(s)	11, 192, 372
Bst2BI	CACGAG	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	179, 308
BstDSI	CCRYGG	2 cut(s)	192, 372
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	2 cut(s)	140, 369
BstHHI	GCGC	2 cut(s)	140, 371
BstKTI	GATC	3 cut(s)	158, 298, 402
BstMBI	GATC	3 cut(s)	155, 295, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 377
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	140, 369
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	2 cut(s)	192, 372
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	2 cut(s)	140, 371
Cfr13I	GGNCC	2 cut(s)	196, 385
CviAII	CATG	4 cut(s)	131, 193, 281, 373
CviJI	RGCY	5 cut(s)	197, 293, 380, 407, 462
CviKI_1	RGCY	5 cut(s)	197, 293, 380, 407, 462
DdeI	CTNAG	2 cut(s)	179, 308
DpnI	GATC	3 cut(s)	157, 297, 401
DpnII	GATC	3 cut(s)	155, 295, 399
Eco130I	CCWWGG	3 cut(s)	11, 192, 372
Eco47I	GGWCC	1 cut(s)	385
EcoT14I	CCWWGG	3 cut(s)	11, 192, 372
ErhI	CCWWGG	3 cut(s)	11, 192, 372
FaeI	CATG	4 cut(s)	134, 196, 284, 376
FaiI	YATR	9 cut(s)	34, 72, 99, 132, 152, 194, 222, 282, 374
FatI	CATG	4 cut(s)	130, 192, 280, 372
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	434, 469
GlaI	GCGC	2 cut(s)	139, 370
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	383, 389
HhaI	GCGC	2 cut(s)	140, 371
Hin1II	CATG	4 cut(s)	134, 196, 284, 376
Hin6I	GCGC	2 cut(s)	138, 369
HinP1I	GCGC	2 cut(s)	138, 369
HinfI	GANTC	4 cut(s)	142, 240, 260, 312
HpaII	CCGG	2 cut(s)	383, 389
HphI	GGTGA	2 cut(s)	31, 74
Hpy188I	TCNGA	5 cut(s)	205, 300, 311, 404, 466
Hpy188III	TCNNGA	3 cut(s)	146, 159, 383
HpyAV	CCTTC	2 cut(s)	52, 158
HpyCH4V	TGCA	4 cut(s)	77, 94, 186, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 377
HpyF3I	CTNAG	2 cut(s)	179, 308
Hsp92II	CATG	4 cut(s)	134, 196, 284, 376
HspAI	GCGC	2 cut(s)	138, 369
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	155, 295, 399
LmnI	GCTCC	2 cut(s)	385, 404
LpnPI	CCDG	8 cut(s)	44, 68, 241, 396, 402, 412, 428, 433
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	103, 344
MaeI	CTAG	2 cut(s)	434, 469
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	3 cut(s)	157, 297, 401
MboI	GATC	3 cut(s)	155, 295, 399
MboII	GAAGA	3 cut(s)	28, 131, 403
MluCI	AATT	1 cut(s)	439
MlyI	GAGTC	2 cut(s)	249, 306
MnlI	CCTC	9 cut(s)	47, 62, 188, 209, 333, 337, 341, 345, 385
MroI	TCCGGA	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	2 cut(s)	383, 389
MspR9I	CCNGG	1 cut(s)	389
MvnI	CGCG	2 cut(s)	140, 369
MwoI	GCNNNNNNNGC	2 cut(s)	290, 377
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	2 cut(s)	192, 372
NdeII	GATC	3 cut(s)	155, 295, 399
NlaIII	CATG	4 cut(s)	134, 196, 284, 376
NlaIV	GGNNCC	2 cut(s)	381, 387
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	142, 260
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	248, 306
PpsI	GAGTC	2 cut(s)	248, 306
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	381, 387
PspPI	GGNCC	2 cut(s)	196, 385
RseI	CAYNNNNRTG	1 cut(s)	191
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	155, 295, 399
Sau96I	GGNCC	2 cut(s)	196, 385
SchI	GAGTC	2 cut(s)	249, 306
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	2 cut(s)	44, 409
SfaNI	GCATC	2 cut(s)	103, 344
SfcI	CTRYAG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	2 cut(s)	434, 469
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	3 cut(s)	11, 192, 372
TaqI	TCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	439
TfiI	GAWTC	2 cut(s)	142, 260
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	2 cut(s)	434, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.