FvH4_1g26430

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000294
Physical Location & Seq
Reverse (-)
18275749 .. 18281245
5497 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26430.t1

Sequence Viewer

Length: 594 bp
ATGGCTTTCTTTTACTATGGAGCAGCCGAACCACCTTGTTTGAATGTAAAGGTCAATGTCGGAGTGATTCTCGACATGGGATCAAGGGAAGGAAATATTATTCTCAGCTGTATATCAATGGCCCTATCTTATTTTTACCATCTGTATGATAACTACAGCACAGAAGTAGTTCTCCACAGTAAGGACTCCAAAGGTGAACCTCTGCCTGCACTGTCAGCTGGTGAGCCATTTATTCTTTCTAACAATTTGCTGTATTTCAAGGTCTCTGGAATTGATTCAATCCTTTATATTGTTGGGAAATGGCTAATCCTGCCGACCCGATTGACTGAGATTGGGTTCCAAATTGGGCTTCTTCATGCGTATCTGGTTGTCCATAGCATACTCGGACGTGTATTGTTTGGCATAGAGAAAGAAGAGGAAGTCCGAATTTGGGGAAAATATGGAGCTGGGAAAGCAAATACGAGGTCCAGGGTATCAAATGCCACAGTTCAGTGTGAGCAAGAGGACACAAAAGCATCGCTAGAGAAGACTTATCAGAATGAAGATCAACTAACATTTGCAAGCCTATTGAATGAAGACTTGAAGATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

198

Amino Acids

22.0

Weight (kDa)

5.39

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 181, 430
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 5 cut(s) 43, 259, 279, 571, 583
AjiI CACGTC 1 cut(s) 389
AjnI CCWGG 1 cut(s) 467
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 108, 218, 446
AluI AGCT 3 cut(s) 108, 218, 446
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 88
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
Asp700I GAANNNNTTC 2 cut(s) 168, 274
AspS9I GGNCC 2 cut(s) 121, 465
AsuHPI GGTGA 2 cut(s) 206, 233
AvaII GGWCC 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 533, 582
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 465
BmgBI CACGTC 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 121, 465
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 524
BpiI GAAGAC 2 cut(s) 533, 582
BplI GAGNNNNNCTC 2 cut(s) 54, 86
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 430
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 181, 430
BseMII CTCAG 2 cut(s) 118, 318
BseXI GCAGC 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 181, 430
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 80, 544
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 117, 319
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 2 cut(s) 80, 544
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 3 cut(s) 179, 213, 487
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 207, 562
BstDEI CTNAG 2 cut(s) 104, 327
BstKTI GATC 2 cut(s) 83, 547
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 80, 544
BstMWI GCNNNNNNNGC 3 cut(s) 215, 310, 452
BstNI CCWGG 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 2 cut(s) 533, 582
BsuRI GGCC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 209, 497
Cac8I GCNNGC 2 cut(s) 207, 562
Cfr13I GGNCC 2 cut(s) 121, 465
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 2 cut(s) 76, 356
DdeI CTNAG 2 cut(s) 104, 327
DpnI GATC 2 cut(s) 82, 546
DpnII GATC 2 cut(s) 80, 544
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 467
FaeI CATG 2 cut(s) 79, 359
FatI CATG 2 cut(s) 75, 355
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 521
GluI GCNGC 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 2 cut(s) 79, 359
HinfI GANTC 3 cut(s) 67, 185, 275
HphI GGTGA 2 cut(s) 206, 233
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 4 cut(s) 62, 386, 425, 537
Hpy188III TCNNGA 2 cut(s) 71, 267
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 3 cut(s) 179, 213, 487
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 209, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 310, 452
HpyF3I CTNAG 2 cut(s) 104, 327
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 2 cut(s) 79, 359
Kzo9I GATC 2 cut(s) 80, 544
LmnI GCTCC 2 cut(s) 20, 443
LpnPI CCDG 8 cut(s) 204, 219, 252, 323, 350, 432, 454, 481
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 524
MaeI CTAG 1 cut(s) 521
MaeII ACGT 1 cut(s) 388
MalI GATC 2 cut(s) 82, 546
MboI GATC 2 cut(s) 80, 544
MboII GAAGA 5 cut(s) 344, 425, 538, 554, 587
MluCI AATT 4 cut(s) 244, 270, 342, 426
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 4 cut(s) 210, 409, 456, 496
MroXI GAANNNNTTC 2 cut(s) 168, 274
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 108, 218
MspR9I CCNGG 1 cut(s) 469
MvaI CCWGG 1 cut(s) 469
MwoI GCNNNNNNNGC 3 cut(s) 215, 310, 452
NdeII GATC 2 cut(s) 80, 544
NlaIII CATG 2 cut(s) 79, 359
NlaIV GGNNCC 1 cut(s) 338
PdmI GAANNNNTTC 2 cut(s) 168, 274
PfeI GAWTC 2 cut(s) 67, 275
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 2 cut(s) 121, 465
PvuII CAGCTG 2 cut(s) 108, 218
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 80, 544
Sau96I GGNCC 2 cut(s) 121, 465
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 469
SfaNI GCATC 1 cut(s) 524
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 4 cut(s) 244, 270, 342, 426
SspI AATATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 467
TaaI ACNGT 3 cut(s) 179, 213, 487
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 72
TasI AATT 4 cut(s) 244, 270, 342, 426
TfiI GAWTC 2 cut(s) 67, 275
TscAI CASTG 2 cut(s) 216, 497
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 344, 555, 588
TspRI CASTG 2 cut(s) 216, 497
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 1 cut(s) 426
XmnI GAANNNNTTC 2 cut(s) 168, 274
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.