Rh1AG169800

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000294
Physical Location & Seq
Forward (+)
32319000 .. 32323066
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG169800.1

Sequence Viewer

Length: 825 bp
ATGGCTCAAATGTATGGAGTTTCACTCTGCATATTATTTTGCTTCCTGGGTCTCTTGTGTGCTGAAGTTGATGATAAAGTGCATTACAACAGTCCTAGTGTTGTGGACGAGGTTGACGTTGGTGTGATTCTTGATATGGGATCAAGGGAAGCAAAACTTGTTCTCAGTTGCATTTCAATGGCCCTGTCTGATTTCTACAATCTGCACAACAACTACAGCACAAGAGTAGTTCTGCACAGTAGGGATTCCCATGGAAAAGCTCTACATGCTCTATCAGCTGCTGTTAGTCTGTTGGATAACATCAAAGTGGAAGCAATAATTAGTGCAGAACCAAGAATGGAAGCAGACCTATTGGAAGAATTAGGAGGAGTTGAAGTCCCAGTATTGTCTCTGTGTCAACCTATTCCTTCTCCTTCTCTGACTCATCGATATCCCTTCTTCATTGAGATCAGACAGGATGAAATTTCTCAGGTTTTTCCTAAAGGTTCTAAATTAGTCCGTGACATGTCGAGGCAAATTGAAATTTTAAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCAGATTTCAGATGCAGTGAATAGTCCTAATCCCGGTACTCTTAACCTCAGCAGCTTTCTAGGTTTATTCCTTGTTACTGGCGTTTCTTCAGCTGCTGCTCTTATATTATTCTTCATTTTGTCCCTTAAAGATAGATGGCATGTCCTAAAGATAAGCACAGCTATATCCCTGAGTAGAGGACAGCTGATGCAACTTATTAGAAGGTCCTTTCTAACAAATTATCCAATGCAGATGAACACATCAATACACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

274

Amino Acids

30.55

Weight (kDa)

5.9

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 55 - 157 3.9e-07 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 2 cut(s) 462, 522
AcuI CTGAAG 2 cut(s) 84, 642
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 3 cut(s) 177, 374, 521
AjnI CCWGG 2 cut(s) 45, 563
AluBI AGCT 7 cut(s) 260, 278, 544, 624, 662, 731, 754
AluI AGCT 7 cut(s) 260, 278, 544, 624, 662, 731, 754
Alw26I GTCTC 2 cut(s) 56, 393
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 2 cut(s) 281, 665
AoxI GGCC 2 cut(s) 180, 561
ApeKI GCWGC 4 cut(s) 278, 621, 662, 665
ApoI RAATTY 2 cut(s) 462, 522
AspS9I GGNCC 2 cut(s) 181, 774
AsuC2I CCSGG 1 cut(s) 603
AvaII GGWCC 1 cut(s) 774
BbvCI CCTCAGC 1 cut(s) 617
BbvI GCAGC 4 cut(s) 265, 633, 649, 652
BccI CCATC 2 cut(s) 547, 699
BciT130I CCWGG 2 cut(s) 47, 565
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 2 cut(s) 56, 393
BfaI CTAG 2 cut(s) 96, 629
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 4 cut(s) 279, 622, 663, 666
BlsI GCNGC 4 cut(s) 280, 623, 664, 667
Bme1390I CCNGG 3 cut(s) 47, 565, 603
Bme18I GGWCC 1 cut(s) 774
BmgT120I GGNCC 2 cut(s) 181, 774
BmrFI CCNGG 3 cut(s) 47, 565, 603
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 571, 747
BmuI ACTGGG 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 9, 41
Bpu10I CCTNAGC 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 603
Bsa29I ATCGAT 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 46, 250
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 2 cut(s) 380, 652
BseBI CCWGG 2 cut(s) 47, 565
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 46, 250
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMII CTCAG 4 cut(s) 178, 482, 631, 731
BseNI ACTGG 2 cut(s) 380, 652
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 4 cut(s) 265, 633, 649, 652
BsgI GTGCAG 3 cut(s) 188, 218, 345
BshFI GGCC 2 cut(s) 182, 563
BshVI ATCGAT 1 cut(s) 427
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 2 cut(s) 362, 676
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 2 cut(s) 56, 393
BsmFI GGGAC 2 cut(s) 362, 676
BsnI GGCC 2 cut(s) 182, 563
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 140, 447
Bsp19I CCATGG 1 cut(s) 250
BspANI GGCC 2 cut(s) 182, 563
BspCNI CTCAG 4 cut(s) 177, 481, 630, 732
BspDI ATCGAT 1 cut(s) 427
BspPI GGATC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 2 cut(s) 380, 652
BssECI CCNNGG 2 cut(s) 46, 250
BssMI GATC 2 cut(s) 140, 447
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 47, 565
Bst4CI ACNGT 2 cut(s) 92, 239
BstDEI CTNAG 4 cut(s) 164, 468, 617, 740
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 2 cut(s) 143, 450
BstMAI GTCTC 2 cut(s) 56, 393
BstMBI GATC 2 cut(s) 140, 447
BstMWI GCNNNNNNNGC 2 cut(s) 266, 275
BstNI CCWGG 2 cut(s) 47, 565
BstNSI RCATGY 3 cut(s) 269, 508, 713
BstSCI CCNGG 3 cut(s) 45, 563, 601
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 265, 633, 649, 652
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 2 cut(s) 182, 563
BsuTUI ATCGAT 1 cut(s) 427
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
CaiI CAGNNNCTG 2 cut(s) 281, 665
Cfr13I GGNCC 2 cut(s) 181, 774
ClaI ATCGAT 1 cut(s) 427
Csp6I GTAC 1 cut(s) 606
CviAII CATG 4 cut(s) 251, 266, 505, 710
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 4 cut(s) 164, 468, 617, 740
DpnI GATC 2 cut(s) 142, 449
DpnII GATC 2 cut(s) 140, 447
Eco130I CCWWGG 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 774
Eco57I CTGAAG 2 cut(s) 84, 642
EcoO109I RGGNCCY 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 45, 563
EcoRV GATATC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 254, 269, 508, 713
FaiI YATR 9 cut(s) 15, 32, 137, 252, 267, 506, 674, 711, 734
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 528, 560
FaqI GGGAC 2 cut(s) 362, 676
FatI CATG 4 cut(s) 250, 265, 504, 709
Fnu4HI GCNGC 4 cut(s) 279, 622, 663, 666
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 4 cut(s) 279, 622, 663, 666
FspBI CTAG 2 cut(s) 96, 629
GluI GCNGC 4 cut(s) 279, 622, 663, 666
HaeIII GGCC 2 cut(s) 182, 563
HapII CCGG 1 cut(s) 603
Hin1II CATG 4 cut(s) 254, 269, 508, 713
HincII GTYRAC 2 cut(s) 115, 398
HindII GTYRAC 2 cut(s) 115, 398
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 3 cut(s) 127, 245, 421
HpaII CCGG 1 cut(s) 603
Hpy166II GTNNAC 3 cut(s) 106, 115, 398
Hpy188I TCNGA 5 cut(s) 190, 420, 452, 573, 580
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 106, 115, 398
HpyAV CCTTC 5 cut(s) 417, 423, 445, 530, 765
HpyCH4III ACNGT 2 cut(s) 92, 239
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 9 cut(s) 30, 82, 171, 205, 235, 326, 584, 760, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 275
HpyF3I CTNAG 4 cut(s) 164, 468, 617, 740
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 4 cut(s) 254, 269, 508, 713
Kzo9I GATC 2 cut(s) 140, 447
Lsp1109I GCAGC 4 cut(s) 265, 633, 649, 652
LweI GCATC 2 cut(s) 571, 747
MaeI CTAG 2 cut(s) 96, 629
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 500, 643
MalI GATC 2 cut(s) 142, 449
MboI GATC 2 cut(s) 140, 447
MboII GAAGA 5 cut(s) 368, 430, 545, 648, 673
MluCI AATT 7 cut(s) 318, 359, 462, 491, 516, 522, 787
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 5 cut(s) 103, 359, 504, 626, 740
MseI TTAA 3 cut(s) 527, 612, 696
MslI CAYNNNNRTG 2 cut(s) 176, 305
MspA1I CMGCKG 3 cut(s) 278, 662, 754
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 3 cut(s) 47, 565, 603
MvaI CCWGG 2 cut(s) 47, 565
MwoI GCNNNNNNNGC 2 cut(s) 266, 275
NciI CCSGG 1 cut(s) 603
NcoI CCATGG 1 cut(s) 250
NdeII GATC 2 cut(s) 140, 447
NlaIII CATG 4 cut(s) 254, 269, 508, 713
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 3 cut(s) 269, 508, 713
PceI AGGCCT 1 cut(s) 563
PciI ACATGT 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 127, 245
PkrI GCNGC 4 cut(s) 280, 623, 664, 667
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PpuMI RGGWCCY 1 cut(s) 774
PscI ACATGT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 45, 563
PspGI CCWGG 2 cut(s) 45, 563
PspPI GGNCC 2 cut(s) 181, 774
PspPPI RGGWCCY 1 cut(s) 774
PstNI CAGNNNCTG 2 cut(s) 281, 665
PvuII CAGCTG 3 cut(s) 278, 662, 754
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 2 cut(s) 176, 305
SaqAI TTAA 3 cut(s) 527, 612, 696
SatI GCNGC 4 cut(s) 279, 622, 663, 666
Sau3AI GATC 2 cut(s) 140, 447
Sau96I GGNCC 2 cut(s) 181, 774
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 47, 565, 603
SfaNI GCATC 2 cut(s) 571, 747
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 176, 305
Sse9I AATT 7 cut(s) 318, 359, 462, 491, 516, 522, 787
SseBI AGGCCT 1 cut(s) 563
SspMI CTAG 2 cut(s) 96, 629
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 3 cut(s) 45, 563, 601
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 92, 239
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 427, 509
TasI AATT 7 cut(s) 318, 359, 462, 491, 516, 522, 787
TfiI GAWTC 2 cut(s) 127, 245
Tru1I TTAA 3 cut(s) 527, 612, 696
Tru9I TTAA 3 cut(s) 527, 612, 696
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 4 cut(s) 278, 621, 662, 665
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 4 cut(s) 430, 474, 673, 818
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 774
XapI RAATTY 2 cut(s) 462, 522
XceI RCATGY 3 cut(s) 269, 508, 713
XspI CTAG 2 cut(s) 96, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.