Rh1BG133700

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000294
Physical Location & Seq
Forward (+)
22355661 .. 22357351
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG133700.1

Sequence Viewer

Length: 750 bp
ATGCAAGGAGTGGTGGGTTTCAAGTCTTCTATTCCAGCATCAATAAACCTTCACAGACTTACATCAAGATTGAGGAGGAAGTTTTACATGGATGATCCAAATATGGGGGCAATTCGGGAGTTAAGTGCAGATGGGATCTGGGCATATGATGCAACTTGGGCTCTAGCAGAAGCAGTTGAAAGAGCAAGGCTTAAAAATTCTACCACTAGATCCTCCAAAGATGGAGCTGTGCTTCTTAGAGAGATATTGCAGACTAGATTTAAAGGTTTAAGCGGTGAAATTCAATATGTGAATGGGAAACTGATTCCATCAGAACCATTTGAGATGGTCAATGTTATTGGAAAAGGTGAGATCAAAAGGATTGGATTTTGGCCTTGCAAAGAAGTAAAATCCGGAAAATGGTCACCCCAGCAGCAGCTTATTCATAGTAGAAGAAATTTAGCTTCTACAATTGATCTTGAAAGAATCATCTGGCCTGGAGGATCCAAGAGGGAATTGAGCAGTAGTGAAACACTTAAACTTAAAATTGGTGTTCCAGTGAAATATGGGTTCAAGGAACTTGTTCGTGTCGAGCATGATCTTGAAACCAATGCAACTCTTGTCACTGGCTTCTGTATAGATGTATTCAAAGCTGCAATAGGAGCTTTGCCATATGAAGTGCTGTACGAGTTTATTCCATTTGAGGATGCCAATGGAAATCCTGCAGGGACTTATAATGATATTGTTTACCAGCGGAAAAGTGTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

249

Amino Acids

27.98

Weight (kDa)

9.22

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 1 - 103 7.2e-13 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 392
AciI CCGC 2 cut(s) 273, 733
AclWI GGATC 5 cut(s) 89, 143, 204, 477, 490
AcsI RAATTY 3 cut(s) 196, 279, 436
AfaI GTAC 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 104, 399
AgsI TTSAA 7 cut(s) 22, 179, 284, 461, 553, 584, 628
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 5 cut(s) 227, 418, 443, 632, 644
AluI AGCT 5 cut(s) 227, 418, 443, 632, 644
AlwI GGATC 5 cut(s) 89, 143, 204, 477, 490
Aor13HI TCCGGA 1 cut(s) 392
AoxI GGCC 2 cut(s) 371, 473
ApeKI GCWGC 3 cut(s) 412, 415, 632
ApoI RAATTY 3 cut(s) 196, 279, 436
Asp700I GAANNNNTTC 1 cut(s) 561
AsuHPI GGTGA 3 cut(s) 287, 359, 396
BamHI GGATCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 424, 427, 619
BccI CCATC 4 cut(s) 125, 215, 316, 319
BciT130I CCWGG 1 cut(s) 477
BfaI CTAG 3 cut(s) 164, 207, 255
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 3 cut(s) 413, 416, 633
BlsI GCNGC 3 cut(s) 414, 417, 634
Bme1390I CCNGG 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 47, 139, 676
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 399
Bse1I ACTGG 2 cut(s) 536, 610
BseAI TCCGGA 1 cut(s) 392
BseBI CCWGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 97, 691
BseLI CCNNNNNNNGG 2 cut(s) 104, 399
BseNI ACTGG 2 cut(s) 536, 610
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 424, 427, 619
BseYI CCCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 2 cut(s) 373, 475
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 2 cut(s) 104, 399
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 2 cut(s) 373, 475
Bsp1286I GDGCHC 1 cut(s) 163
Bsp13I TCCGGA 1 cut(s) 392
Bsp143I GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
BspACI CCGC 2 cut(s) 273, 733
BspANI GGCC 2 cut(s) 373, 475
BspEI TCCGGA 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 484
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 5 cut(s) 89, 143, 204, 477, 490
BsrI ACTGG 2 cut(s) 536, 610
BssMI GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
Bst2UI CCWGG 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 236
BstEII GGTNACC 1 cut(s) 402
BstF5I GGATG 2 cut(s) 97, 691
BstKTI GATC 7 cut(s) 97, 138, 212, 354, 457, 485, 580
BstMBI GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 641
BstNI CCWGG 1 cut(s) 477
BstPI GGTNACC 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 424, 427, 619
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 3 cut(s) 135, 209, 482
BstYI RGATCY 3 cut(s) 135, 209, 482
BsuRI GGCC 2 cut(s) 373, 475
BtsCI GGATG 2 cut(s) 97, 691
BtsIMutI CAGTG 2 cut(s) 543, 603
Csp6I GTAC 1 cut(s) 664
CviAII CATG 2 cut(s) 88, 575
CviQI GTAC 1 cut(s) 664
DdeI CTNAG 1 cut(s) 236
DpnI GATC 7 cut(s) 96, 137, 211, 353, 456, 484, 579
DpnII GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
DraI TTTAAA 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 402
EcoO65I GGTNACC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 163
FaeI CATG 2 cut(s) 91, 578
FaqI GGGAC 1 cut(s) 721
FatI CATG 2 cut(s) 87, 574
FauNDI CATATG 2 cut(s) 145, 652
Fnu4HI GCNGC 3 cut(s) 413, 416, 633
FokI GGATG 2 cut(s) 104, 698
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 413, 416, 633
FspBI CTAG 3 cut(s) 164, 207, 255
GluI GCNGC 3 cut(s) 413, 416, 633
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 373, 475
HapII CCGG 1 cut(s) 393
Hin1II CATG 2 cut(s) 91, 578
HinfI GANTC 2 cut(s) 304, 465
HpaII CCGG 1 cut(s) 393
HphI GGTGA 3 cut(s) 287, 359, 396
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 5 cut(s) 66, 116, 393, 458, 581
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 8 cut(s) 4, 128, 152, 250, 378, 593, 635, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 641
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 2 cut(s) 91, 578
Kpn2I TCCGGA 1 cut(s) 392
Kzo9I GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
LmnI GCTCC 2 cut(s) 224, 641
Lsp1109I GCAGC 3 cut(s) 424, 427, 619
LweI GCATC 3 cut(s) 47, 139, 676
MaeI CTAG 3 cut(s) 164, 207, 255
MaeIII GTNAC 2 cut(s) 402, 601
MalI GATC 7 cut(s) 96, 137, 211, 353, 456, 484, 579
MboI GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
MboII GAAGA 2 cut(s) 18, 444
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 3 cut(s) 135, 209, 482
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 7 cut(s) 111, 196, 279, 436, 450, 494, 525
MnlI CCTC 6 cut(s) 66, 69, 223, 473, 483, 676
MroI TCCGGA 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 6 cut(s) 122, 192, 261, 269, 516, 522
MspA1I CMGCKG 1 cut(s) 733
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 477
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 641
NdeI CATATG 2 cut(s) 145, 652
NdeII GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
NlaIII CATG 2 cut(s) 91, 578
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 402, 601
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 304, 465
PkrI GCNGC 3 cut(s) 414, 417, 634
PsiI TTATAA 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 475
PspEI GGTNACC 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 484
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 3 cut(s) 135, 209, 482
RsaI GTAC 1 cut(s) 665
RsaNI GTAC 1 cut(s) 664
SaqAI TTAA 6 cut(s) 122, 192, 261, 269, 516, 522
SatI GCNGC 3 cut(s) 413, 416, 633
Sau3AI GATC 7 cut(s) 94, 135, 209, 351, 454, 482, 577
SbfI CCTGCAGG 1 cut(s) 706
ScrFI CCNGG 1 cut(s) 477
SdaI CCTGCAGG 1 cut(s) 706
SduI GDGCHC 1 cut(s) 163
SetI ASST 8 cut(s) 51, 229, 268, 349, 420, 445, 634, 646
SfaNI GCATC 3 cut(s) 47, 139, 676
SfcI CTRYAG 1 cut(s) 702
Sse8387I CCTGCAGG 1 cut(s) 706
Sse9I AATT 7 cut(s) 111, 196, 279, 436, 450, 494, 525
SsiI CCGC 2 cut(s) 273, 733
SspMI CTAG 3 cut(s) 164, 207, 255
StyD4I CCNGG 1 cut(s) 475
TaqI TCGA 2 cut(s) 570, 744
TasI AATT 7 cut(s) 111, 196, 279, 436, 450, 494, 525
TfiI GAWTC 2 cut(s) 304, 465
Tru1I TTAA 6 cut(s) 122, 192, 261, 269, 516, 522
Tru9I TTAA 6 cut(s) 122, 192, 261, 269, 516, 522
TscAI CASTG 2 cut(s) 543, 610
TseFI GTSAC 2 cut(s) 402, 601
TseI GCWGC 3 cut(s) 412, 415, 632
Tsp45I GTSAC 2 cut(s) 402, 601
TspDTI ATGAA 2 cut(s) 413, 669
TspRI CASTG 2 cut(s) 543, 610
XapI RAATTY 3 cut(s) 196, 279, 436
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 3 cut(s) 164, 207, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.