Rw1G014090

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000294
Physical Location & Seq
Forward (+)
31421334 .. 31426125
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014090.1

Sequence Viewer

Length: 2664 bp
ATGGAGTTTCAAGGGAAGAGGCAAACCATTTTCTGCCTATTCTTTGTGACCTTTTGTCTCCTGGGTGACATTTTTGCTCAAAGTAATGAAGAATTAATGCATTATGATAATAATCCACTAACTGTGGAAGAGGTTCATGTCGGTGTGATTCTGGATATGCAATCAAGGGAAGGAAAGATTGTACTTGGCTGCATTTCGACGGCTCTGTCGGATTTTTATCATCTGCATAATAATTACAGCACAAGAGTAGTACTCCACAATAGAGACTCCAGTGGAAAACATCTGCATGCTCTATCAGCTGCTCTTGATCTTTTGAATAACATCAAAGTGGAAGCAATACTTGGTGCGCAAACAAGAATGGAAGCAAACCTATTAGCGGATTTAGGAGAAGATGTTGAAGTCCCTATATTGTCTCTATCTCAACCTAGTCTAGCTCCTCTGACCAACAAAAATCCCTTCTTTGTTGAGGTCACACAGGATGAAACTTTGCAGGTTACAGGGATCACTGCTCTTATTGAAATGTTCATTTGGAGAAATGTTATCCTTCTATATGAGAGGACAAATCATGCAAGTGACATAATTCCATCTTTGATCAATTCCTTCCAAGAGAAAAATGTCTATATTGCATATATAAGTTCCATTTCTACCTCCTCAACAACTGAACAAATCATTGAAGAGCTTCAAAAGCTAAAGGCATTAGACGATACAGTATTTGTGGTGCATATCTCACATTTTCTTGTGCCTCGGCTTTTTATGAATGCAAAGAAGCTAGGAATGATGAGTGAAGGGTATGCTTGGATTCTGACATCAACAAGCTTGAATTTCTTGAATTCTATGGATTCTGCTGTGATTGAATCAATGCAAGGAGTGCTGGGGTTGAAGTCGCATATTCCAACTTCAAGGAGCCTCCATAATCTTACTCCTAGATTGAGGAGAAAATTGTATATTGAGGAGTCCCATATGGAAGTACTAGAATTGAGTGCTGATGCAATCTGGGCATATGATGCAACTTGGGTTCTAGCAGAAGCAGTTGAGAGGTCATGGATTAAAATTTCTACAAGACTAAACCGAAAGGATTTAAAAGATATTGAATCCTCTAAGCCTGGAAGTGTGCTTCTTGAAGAGTTACTGCAAAGTAGGGTTAAAGGGTTAAGTGGTGAAATTCAGTATCCAAAGCAGAAGCTAATTGCAGACAAACTTGATATAGTAAATGTGATAGGAAAGGGGGAGAGAAGAATTGGAGTTTTGACTTTTGAAGAAGAAAACACAAAAGAATCACAGCCCCTTAAAAACAAAAGAAATTTACTTTCCACCAGTGATCTGGAAACTGTCATATGGCCTGGAGGATCATCAACCATTACGAAAGGTTCCAAGAAGAAATTGAGTGAAACAAAATTAAGAGTTGGTGTTCCCCCAAAGAGAGGGTTCGAGGAACTTGTGCATGTGAAACATGACTTCCAAACCAATAAAACAAATTTCACAGGCTTCTGTATAGATGTGTTTGAAACCACAATAAGAGGATTGCCCTATACAGTACAATATGAGTTTATTCCATTTGAGGATGCTAATGGACTTTTGGCTGGGATGTACGACGATCTTGTCTACCAGGTTTATCTCCAGAAATACGATGCTGCTGTTGGAGATATAACAATCACATCAAACAGATCGTTATATGTTGATTTTACAGTACCATATTCTGACTTAGGCGTGGGAACGCTAGTAGCAAATGAAAAGGAAAACATGTGGATTTTCTTAAGACCTTTTTCAACAGACCTTTGGATGACAAGTGCTGGTTTCTTTATCCTGACTGGTTTTGTTGTGTGGGTAATTGAGCGTCCTACAAACAAAGAATTCCAGGGCTCACCATCACAGCAAATTGAAACAATATTCTGGTTCTCCTTTTCAACCCTTGTCTTTGCTCATAGGGAGAAGTTGTTGAACAATTCAGCAAAGTTTGTGGTGATCATATGGTTTTTTGTAGTTCTTATATTGACTTCTAGTTACACTGCAACTTTAACAACAATGATGACAGTTAAACAAATGCAATTGAACGCCAGAGGGAACTACATAGGTTACCAGGGTGGTTCATCATTGGTTACCGCACATGCTGTAGAGAACTTGAATTTCAAAGGGGCTAAACCATATAGTTCAGTTGAAGCATATGCTGATGCTTTGTCAAGAGGAAGCAAGCATGGTGGTGTTTCTGCTATTGTTGACGAGGTACCATACATTAAGGTCTTCCTTGCAAAGTATTCTGAGGGCTACTCTATGATTAAAACCGAGTCTACTACCAATGGTTTTGGCTTTGCTTTCCCTAAAGGCTCGAAATTGGCACATGACATGTCAATCCAAGTTGAAAAATTGAGAGAAGAAGGAAAGCTTTTAGAGATGGAAAAGGCCTGGTTTCATTATAATGGGAATCACATGTTTGAGGACACAGCAAGTCCTCCCAATACTCTTAATCTTAGCATCTTTCGTGGTTTATTCCTTGTTAGTGGGGTTTCTTCAGCTTTTGCTCTATTTTTGTTCACAATTTCTCCACTCAGAGAGAAATGGCAACTTGTGAAGAAATGCAGATATCTTATTCAGGTTACGCTGCTGAATGTATGGAAATCCCTTTCTAACAGAGTTTCAAATCAAAATGAAGAAAACTATGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

887

Amino Acids

100.11

Weight (kDa)

6.14

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 45 - 347 1.8e-06 Periplasmic binding protein
ANF_receptor PF01094 64 - 407 4.3e-58 Receptor family ligand binding region
Lig_chan-Glu_bd PF10613 484 - 576 1.5e-10 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 486 - 803 5.3e-10 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 589 - 834 2.9e-28 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2412
AasI GACNNNNNNGTC 2 cut(s) 205, 1598
Acc16I TGCGCA 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 481
Acc65I GGTACC 1 cut(s) 2221
AccB1I GGYRCC 1 cut(s) 2221
AccI GTMKAC 2 cut(s) 1602, 2285
AciI CCGC 2 cut(s) 377, 2100
AclWI GGATC 2 cut(s) 509, 1354
AcsI RAATTY 8 cut(s) 820, 829, 1050, 1161, 1300, 1474, 1850, 2122
AcuI CTGAAG 1 cut(s) 2490
AfaI GTAC 7 cut(s) 183, 252, 969, 1536, 1589, 1689, 2223
AfiI CCNNNNNNNGG 2 cut(s) 376, 1421
AflII CTTAAG 1 cut(s) 1753
AflIII ACRYGT 3 cut(s) 1740, 2340, 2424
AhdI GACNNNNNGTC 1 cut(s) 54
AjnI CCWGG 7 cut(s) 60, 1102, 1339, 1605, 1854, 2076, 2399
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 9 cut(s) 299, 434, 679, 688, 769, 816, 1183, 2380, 2510
AluI AGCT 9 cut(s) 299, 434, 679, 688, 769, 816, 1183, 2380, 2510
Alw26I GTCTC 3 cut(s) 62, 258, 417
AlwI GGATC 2 cut(s) 509, 1354
AoxI GGCC 2 cut(s) 1337, 2397
ApeKI GCWGC 4 cut(s) 189, 299, 1631, 2596
ApoI RAATTY 8 cut(s) 820, 829, 1050, 1161, 1300, 1474, 1850, 2122
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 2 cut(s) 132, 678
Asp718I GGTACC 1 cut(s) 2221
AspLEI GCGC 1 cut(s) 349
AsuHPI GGTGA 4 cut(s) 77, 1169, 1854, 1972
BanI GGYRCC 1 cut(s) 2221
BanII GRGCYC 1 cut(s) 1862
BbsI GAAGAC 1 cut(s) 2230
BbvI GCAGC 4 cut(s) 176, 286, 1618, 2583
BccI CCATC 3 cut(s) 592, 1873, 2383
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
BciVI GTATCC 1 cut(s) 1179
BclI TGATCA 2 cut(s) 591, 1962
BcoDI GTCTC 3 cut(s) 62, 258, 417
BfaI CTAG 8 cut(s) 426, 431, 770, 924, 971, 1019, 1718, 1998
BfmI CTRYAG 1 cut(s) 2109
BfrI CTTAAG 1 cut(s) 1753
BfuAI ACCTGC 1 cut(s) 481
BfuI GTATCC 1 cut(s) 1179
BisI GCNGC 4 cut(s) 190, 300, 1632, 2597
BlsI GCNGC 4 cut(s) 191, 301, 1633, 2598
BmcAI AGTACT 2 cut(s) 252, 969
Bme1390I CCNGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
BmeRI GACNNNNNGTC 1 cut(s) 54
BmiI GGNNCC 3 cut(s) 905, 1369, 2223
BmrFI CCNGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
BmsI GCATC 6 cut(s) 976, 994, 1552, 1618, 2158, 2478
BpiI GAAGAC 1 cut(s) 2230
BplI GAGNNNNNCTC 4 cut(s) 237, 269, 2249, 2281
BpmI CTGGAG 3 cut(s) 253, 1362, 1601
BsaBI GATNNNNATC 2 cut(s) 111, 216
BsaJI CCNNGG 4 cut(s) 61, 743, 1855, 2077
BsaXI ACNNNNNCTCC 6 cut(s) 378, 408, 1919, 1949, 2521, 2551
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 1421
Bse1I ACTGG 3 cut(s) 270, 1314, 1813
Bse8I GATNNNNATC 2 cut(s) 111, 216
BseBI CCWGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
BseDI CCNNGG 4 cut(s) 61, 743, 1855, 2077
BseGI GGATG 4 cut(s) 484, 1567, 1590, 1785
BseJI GATNNNNATC 2 cut(s) 111, 216
BseLI CCNNNNNNNGG 2 cut(s) 376, 1421
BseMII CTCAG 2 cut(s) 2247, 2557
BseNI ACTGG 3 cut(s) 270, 1314, 1813
BseRI GAGGAG 4 cut(s) 426, 640, 946, 965
BseXI GCAGC 4 cut(s) 176, 286, 1618, 2583
BseYI CCCAGC 2 cut(s) 871, 1580
BshFI GGCC 2 cut(s) 1339, 2399
BshNI GGYRCC 1 cut(s) 2221
BslFI GGGAC 2 cut(s) 386, 940
BslI CCNNNNNNNGG 2 cut(s) 376, 1421
BsmAI GTCTC 3 cut(s) 62, 258, 417
BsmFI GGGAC 2 cut(s) 386, 940
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 2 cut(s) 1339, 2399
Bsp1286I GDGCHC 1 cut(s) 1862
Bsp143I GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
BspACI CCGC 2 cut(s) 377, 2100
BspANI GGCC 2 cut(s) 1339, 2399
BspCNI CTCAG 2 cut(s) 2248, 2556
BspLI GGNNCC 3 cut(s) 905, 1369, 2223
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 2 cut(s) 509, 1354
BspQI GCTCTTC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 2221
BspTI CTTAAG 1 cut(s) 1753
BsrI ACTGG 3 cut(s) 270, 1314, 1813
BssECI CCNNGG 4 cut(s) 61, 743, 1855, 2077
BssMI GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
Bst2UI CCWGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
Bst4CI ACNGT 6 cut(s) 124, 709, 1330, 1534, 1687, 2032
Bst6I CTCTTC 4 cut(s) 11, 123, 669, 1116
BstAFI CTTAAG 1 cut(s) 1753
BstAPI GCANNNNNTGC 2 cut(s) 868, 1004
BstC8I GCNNGC 2 cut(s) 288, 2189
BstDEI CTNAG 5 cut(s) 1098, 1702, 2256, 2465, 2543
BstEII GGTNACC 2 cut(s) 2072, 2095
BstF5I GGATG 4 cut(s) 484, 1567, 1590, 1785
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 8 cut(s) 310, 504, 594, 1321, 1349, 1597, 1667, 1965
BstMAI GTCTC 3 cut(s) 62, 258, 417
BstMBI GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
BstMWI GCNNNNNNNGC 5 cut(s) 296, 685, 868, 995, 1004
BstNI CCWGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
BstNSI RCATGY 6 cut(s) 290, 1445, 1744, 2108, 2344, 2428
BstPI GGTNACC 2 cut(s) 2072, 2095
BstSCI CCNGG 7 cut(s) 60, 1102, 1339, 1605, 1854, 2076, 2399
BstSFI CTRYAG 1 cut(s) 2109
BstV1I GCAGC 4 cut(s) 176, 286, 1618, 2583
BstV2I GAAGAC 1 cut(s) 2230
BstXI CCANNNNNNTGG 1 cut(s) 1321
BsuI GTATCC 1 cut(s) 1179
BsuRI GGCC 2 cut(s) 1339, 2399
BtsCI GGATG 4 cut(s) 484, 1567, 1590, 1785
BtsI GCAGTG 2 cut(s) 504, 2004
BtsIMutI CAGTG 4 cut(s) 277, 504, 1321, 2004
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 288, 2189
CfoI GCGC 1 cut(s) 349
CseI GACGC 1 cut(s) 1823
CsiI ACCWGGT 1 cut(s) 1605
Csp6I GTAC 7 cut(s) 182, 251, 968, 1535, 1588, 1688, 2222
CspCI CAANNNNNGTGG 4 cut(s) 1938, 1973, 2176, 2211
CviQI GTAC 7 cut(s) 182, 251, 968, 1535, 1588, 1688, 2222
DdeI CTNAG 5 cut(s) 1098, 1702, 2256, 2465, 2543
DpnI GATC 8 cut(s) 309, 503, 593, 1320, 1348, 1596, 1666, 1964
DpnII GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
DraI TTTAAA 1 cut(s) 1080
DrdI GACNNNNNNGTC 2 cut(s) 205, 1598
DriI GACNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 2 cut(s) 205, 1598
Eam1104I CTCTTC 4 cut(s) 11, 123, 669, 1116
Eam1105I GACNNNNNGTC 1 cut(s) 54
EarI CTCTTC 4 cut(s) 11, 123, 669, 1116
Eco147I AGGCCT 1 cut(s) 2399
Eco24I GRGCYC 1 cut(s) 1862
Eco32I GATATC 1 cut(s) 2579
Eco57I CTGAAG 1 cut(s) 2490
Eco91I GGTNACC 2 cut(s) 2072, 2095
EcoO65I GGTNACC 2 cut(s) 2072, 2095
EcoRI GAATTC 2 cut(s) 829, 1850
EcoRII CCWGG 7 cut(s) 60, 1102, 1339, 1605, 1854, 2076, 2399
EcoRV GATATC 1 cut(s) 2579
EcoT22I ATGCAT 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 1862
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 2364, 2396
FaqI GGGAC 2 cut(s) 386, 940
FauNDI CATATG 5 cut(s) 960, 1000, 1334, 1967, 2161
FbaI TGATCA 2 cut(s) 591, 1962
FblI GTMKAC 2 cut(s) 1602, 2285
Fnu4HI GCNGC 4 cut(s) 190, 300, 1632, 2597
FokI GGATG 4 cut(s) 491, 1574, 1597, 1792
FriOI GRGCYC 1 cut(s) 1862
Fsp4HI GCNGC 4 cut(s) 190, 300, 1632, 2597
FspBI CTAG 8 cut(s) 426, 431, 770, 924, 971, 1019, 1718, 1998
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 1 cut(s) 348
GluI GCNGC 4 cut(s) 190, 300, 1632, 2597
GsaI CCCAGC 2 cut(s) 875, 1584
GsuI CTGGAG 3 cut(s) 253, 1362, 1601
HaeIII GGCC 2 cut(s) 1339, 2399
HgaI GACGC 1 cut(s) 1823
HhaI GCGC 1 cut(s) 349
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 1 cut(s) 2215
HindII GTYRAC 1 cut(s) 2215
HindIII AAGCTT 2 cut(s) 814, 2378
HphI GGTGA 4 cut(s) 77, 1169, 1854, 1972
Hpy166II GTNNAC 4 cut(s) 1603, 2215, 2286, 2529
Hpy188I TCNGA 6 cut(s) 211, 441, 804, 1699, 2257, 2546
Hpy188III TCNNGA 8 cut(s) 152, 305, 826, 1118, 1322, 1618, 1804, 2178
Hpy8I GTNNAC 4 cut(s) 1603, 2215, 2286, 2529
Hpy99I CGWCG 2 cut(s) 202, 1595
HpyAV CCTTC 6 cut(s) 164, 466, 554, 610, 779, 2366
HpyCH4III ACNGT 6 cut(s) 124, 709, 1330, 1534, 1687, 2032
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 685, 868, 995, 1004
HpyF3I CTNAG 5 cut(s) 1098, 1702, 2256, 2465, 2543
HspAI GCGC 1 cut(s) 347
KpnI GGTACC 1 cut(s) 2225
Ksp22I TGATCA 2 cut(s) 591, 1962
Kzo9I GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 2 cut(s) 439, 903
Lsp1109I GCAGC 4 cut(s) 176, 286, 1618, 2583
LweI GCATC 6 cut(s) 976, 994, 1552, 1618, 2158, 2478
MabI ACCWGGT 1 cut(s) 1605
MaeI CTAG 8 cut(s) 426, 431, 770, 924, 971, 1019, 1718, 1998
MalI GATC 8 cut(s) 309, 503, 593, 1320, 1348, 1596, 1666, 1964
MboI GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
MfeI CAATTG 1 cut(s) 2045
MhlI GDGCHC 1 cut(s) 1862
MlyI GAGTC 3 cut(s) 260, 962, 2291
MmeI TCCRAC 3 cut(s) 189, 917, 1618
Mph1103I ATGCAT 1 cut(s) 102
MroXI GAANNNNTTC 2 cut(s) 132, 678
MslI CAYNNNNRTG 6 cut(s) 141, 285, 326, 570, 2196, 2412
MspA1I CMGCKG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 1753
MspR9I CCNGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
MunI CAATTG 1 cut(s) 2045
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
MwoI GCNNNNNNNGC 5 cut(s) 296, 685, 868, 995, 1004
NdeI CATATG 5 cut(s) 960, 1000, 1334, 1967, 2161
NdeII GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
NlaIV GGNNCC 3 cut(s) 905, 1369, 2223
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 4 cut(s) 46, 65, 469, 572
NsbI TGCGCA 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 6 cut(s) 290, 1445, 1744, 2108, 2344, 2428
PaeI GCATGC 1 cut(s) 290
PceI AGGCCT 1 cut(s) 2399
PciI ACATGT 3 cut(s) 1740, 2340, 2424
PciSI GCTCTTC 1 cut(s) 669
PctI GAATGC 1 cut(s) 763
PdmI GAANNNNTTC 2 cut(s) 132, 678
PfeI GAWTC 7 cut(s) 148, 799, 839, 854, 1091, 1274, 2419
PkrI GCNGC 4 cut(s) 191, 301, 1633, 2598
PleI GAGTC 3 cut(s) 260, 961, 2290
PpsI GAGTC 3 cut(s) 260, 961, 2290
PscI ACATGT 3 cut(s) 1740, 2340, 2424
PshBI ATTAAT 1 cut(s) 95
PsiI TTATAA 1 cut(s) 2412
Psp6I CCWGG 7 cut(s) 60, 1102, 1339, 1605, 1854, 2076, 2399
PspEI GGTNACC 2 cut(s) 2072, 2095
PspFI CCCAGC 2 cut(s) 871, 1580
PspGI CCWGG 7 cut(s) 60, 1102, 1339, 1605, 1854, 2076, 2399
PspN4I GGNNCC 3 cut(s) 905, 1369, 2223
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 7 cut(s) 183, 252, 969, 1536, 1589, 1689, 2223
RsaNI GTAC 7 cut(s) 182, 251, 968, 1535, 1588, 1688, 2222
RseI CAYNNNNRTG 6 cut(s) 141, 285, 326, 570, 2196, 2412
SapI GCTCTTC 1 cut(s) 669
SatI GCNGC 4 cut(s) 190, 300, 1632, 2597
Sau3AI GATC 8 cut(s) 307, 501, 591, 1318, 1346, 1594, 1664, 1962
ScaI AGTACT 2 cut(s) 252, 969
SchI GAGTC 3 cut(s) 260, 962, 2291
ScrFI CCNGG 7 cut(s) 62, 1104, 1341, 1607, 1856, 2078, 2401
SduI GDGCHC 1 cut(s) 1862
SexAI ACCWGGT 1 cut(s) 1605
SfaNI GCATC 6 cut(s) 976, 994, 1552, 1618, 2158, 2478
SfcI CTRYAG 1 cut(s) 2109
SmiMI CAYNNNNRTG 6 cut(s) 141, 285, 326, 570, 2196, 2412
SmlI CTYRAG 1 cut(s) 1753
SmoI CTYRAG 1 cut(s) 1753
SphI GCATGC 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 2399
SsiI CCGC 2 cut(s) 377, 2100
SspI AATATT 1 cut(s) 1887
SspMI CTAG 8 cut(s) 426, 431, 770, 924, 971, 1019, 1718, 1998
StuI AGGCCT 1 cut(s) 2399
StyD4I CCNGG 7 cut(s) 60, 1102, 1339, 1605, 1854, 2076, 2399
TaaI ACNGT 6 cut(s) 124, 709, 1330, 1534, 1687, 2032
TaqI TCGA 3 cut(s) 197, 1428, 2324
TatI WGTACW 4 cut(s) 181, 250, 967, 1534
TfiI GAWTC 7 cut(s) 148, 799, 839, 854, 1091, 1274, 2419
TscAI CASTG 4 cut(s) 277, 511, 1321, 2011
TseFI GTSAC 4 cut(s) 46, 65, 469, 572
TseI GCWGC 4 cut(s) 189, 299, 1631, 2596
Tsp45I GTSAC 4 cut(s) 46, 65, 469, 572
TspDTI ATGAA 9 cut(s) 102, 125, 495, 514, 770, 1743, 2076, 2396, 2658
TspRI CASTG 4 cut(s) 277, 511, 1321, 2011
Vha464I CTTAAG 1 cut(s) 1753
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 8 cut(s) 820, 829, 1050, 1161, 1300, 1474, 1850, 2122
XceI RCATGY 6 cut(s) 290, 1445, 1744, 2108, 2344, 2428
XcmI CCANNNNNNNNNTGG 1 cut(s) 1318
XmiI GTMKAC 2 cut(s) 1602, 2285
XmnI GAANNNNTTC 2 cut(s) 132, 678
XspI CTAG 8 cut(s) 426, 431, 770, 924, 971, 1019, 1718, 1998
ZrmI AGTACT 2 cut(s) 252, 969
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.