Rh1CG158100

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000294
Physical Location & Seq
Forward (+)
34982766 .. 35001685
18920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG158100.1

Sequence Viewer

Length: 774 bp
ATGGAGTTCCCTTGGAAGAAGCAAACCATCCTATGCCTCACCTTCTTTTGCCTCCTGCTGGGTGATTTCTATGCTGCAACTGACCAGAAAGTGTATCATAATACACCCATTATCACGGAAGAAGCGGTCCATGTGGGAGTGATTCTTGATATGAGATCAAGAGAAGGAAGTATTGTCCTCAGTTGCATTTCGATGGCCCTCTCTGATTTCTACTATCAGCATAGTAACTACAGCACACGAGTCATTCTACACAGCAGGGATTCAAAAGGAAACCCACTGCATGCTGTTTGGGCTGCTCTTAATCTATTGGATAAAATCAAAGTAGAAGCAATAATTGGTGCACAAACAAGTATGGAAGCAAGCCTTTTGGCCGAGCTGGGAGAAGCAACTAAGGTCCCTGTTTTCCCTAAAGGTTCCAAATTGGTCCATGATATTTCAAGGCAAATTGAAATTTTGAGAGAAGAAGGAAAGCTTGTAGAGATGGAAGAGGCTTGGTTTCATAGTATAAAAACTGATCTCATGTTTGACGACACAACAAGTGATCCGAATCCACTCAATCTCCACAGCTTCCGGGGTTTATTCCTCATCAGCGGCGTTTCCTCAGTTGTTGCACTTATCTTGTTCACAATTTTCTTGGTGAAAGAGAAATGGCATGTCGTGAAGACATTCAAAGTTGGATATGTGATCCGAGCACAACTGCAGCATGTAAGAAAATTACTGTCCACAAAAGTATCCGATGAGAATCATCAAAACTGCATTACAAGTGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

257

Amino Acids

29.02

Weight (kDa)

6.59

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 61 - 139 2.2e-10 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 125, 591
AclWI GGATC 2 cut(s) 536, 679
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 4 cut(s) 264, 438, 449, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 4 cut(s) 376, 472, 567, 771
AluI AGCT 4 cut(s) 376, 472, 567, 771
Alw21I GWGCWC 2 cut(s) 343, 694
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 2 cut(s) 536, 679
AoxI GGCC 2 cut(s) 195, 369
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 3 cut(s) 74, 293, 700
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 665
AspS9I GGNCC 4 cut(s) 127, 196, 394, 424
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 31, 74, 649
AsuNHI GCTAGC 1 cut(s) 767
AvaII GGWCC 3 cut(s) 127, 394, 424
BaeGI GKGCMC 1 cut(s) 343
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 2 cut(s) 343, 694
BbvI GCAGC 3 cut(s) 61, 280, 712
BccI CCATC 3 cut(s) 35, 187, 475
BciVI GTATCC 1 cut(s) 742
BcnI CCSGG 1 cut(s) 572
BfaI CTAG 2 cut(s) 768, 772
BfmI CTRYAG 2 cut(s) 229, 698
BfuI GTATCC 1 cut(s) 742
BisI GCNGC 4 cut(s) 75, 294, 592, 701
BlsI GCNGC 4 cut(s) 76, 295, 593, 702
Bme1390I CCNGG 1 cut(s) 572
Bme18I GGWCC 3 cut(s) 127, 394, 424
BmgT120I GGNCC 4 cut(s) 127, 196, 394, 424
BmiI GGNNCC 2 cut(s) 396, 415
BmrFI CCNGG 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 572
BsaBI GATNNNNATC 2 cut(s) 546, 741
BsaJI CCNNGG 2 cut(s) 11, 571
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse8I GATNNNNATC 2 cut(s) 546, 741
BseDI CCNNGG 2 cut(s) 11, 571
BseGI GGATG 1 cut(s) 27
BseJI GATNNNNATC 2 cut(s) 546, 741
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 193, 615
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 3 cut(s) 61, 280, 712
BseYI CCCAGC 2 cut(s) 58, 376
BshFI GGCC 2 cut(s) 197, 371
BsiHKAI GWGCWC 2 cut(s) 343, 694
BsiSI CCGG 1 cut(s) 571
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 2 cut(s) 197, 371
Bsp1286I GDGCHC 2 cut(s) 343, 694
Bsp143I GATC 4 cut(s) 155, 514, 541, 684
BspACI CCGC 2 cut(s) 125, 591
BspANI GGCC 2 cut(s) 197, 371
BspCNI CTCAG 2 cut(s) 192, 614
BspLI GGNNCC 2 cut(s) 396, 415
BspMAI CTGCAG 1 cut(s) 702
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 2 cut(s) 536, 679
BssECI CCNNGG 2 cut(s) 11, 571
BssMI GATC 4 cut(s) 155, 514, 541, 684
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 282, 361, 769
BstDEI CTNAG 3 cut(s) 179, 390, 601
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 4 cut(s) 158, 517, 544, 687
BstMBI GATC 4 cut(s) 155, 514, 541, 684
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 3 cut(s) 284, 656, 707
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 2 cut(s) 229, 698
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 61, 280, 712
BstV2I GAAGAC 1 cut(s) 668
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 2 cut(s) 197, 371
BtsCI GGATG 1 cut(s) 27
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 3 cut(s) 282, 361, 769
Cfr13I GGNCC 4 cut(s) 127, 196, 394, 424
CviAII CATG 6 cut(s) 131, 281, 428, 520, 653, 704
CviJI RGCY 9 cut(s) 197, 293, 363, 371, 376, 472, 491, 567, 771
CviKI_1 RGCY 9 cut(s) 197, 293, 363, 371, 376, 472, 491, 567, 771
DdeI CTNAG 3 cut(s) 179, 390, 601
DpnI GATC 4 cut(s) 157, 516, 543, 686
DpnII GATC 4 cut(s) 155, 514, 541, 684
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 3 cut(s) 127, 394, 424
EcoO109I RGGNCCY 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 6 cut(s) 134, 284, 431, 523, 656, 707
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 456, 488
FaqI GGGAC 1 cut(s) 380
FatI CATG 6 cut(s) 130, 280, 427, 519, 652, 703
Fnu4HI GCNGC 4 cut(s) 75, 294, 592, 701
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 4 cut(s) 75, 294, 592, 701
FspBI CTAG 2 cut(s) 768, 772
GluI GCNGC 4 cut(s) 75, 294, 592, 701
GsaI CCCAGC 2 cut(s) 62, 380
HaeIII GGCC 2 cut(s) 197, 371
HapII CCGG 1 cut(s) 571
Hin1II CATG 6 cut(s) 134, 284, 431, 523, 656, 707
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 5 cut(s) 142, 240, 260, 547, 742
HpaII CCGG 1 cut(s) 571
HphI GGTGA 3 cut(s) 31, 74, 649
Hpy166II GTNNAC 3 cut(s) 341, 624, 723
Hpy188I TCNGA 4 cut(s) 205, 546, 689, 736
Hpy188III TCNNGA 3 cut(s) 146, 159, 658
Hpy8I GTNNAC 3 cut(s) 341, 624, 723
HpyAV CCTTC 3 cut(s) 52, 158, 458
HpyCH4III ACNGT 1 cut(s) 720
HpyCH4V TGCA 7 cut(s) 77, 186, 280, 341, 611, 700, 756
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 179, 390, 601
Hsp92II CATG 6 cut(s) 134, 284, 431, 523, 656, 707
Kzo9I GATC 4 cut(s) 155, 514, 541, 684
LpnPI CCDG 7 cut(s) 44, 68, 98, 241, 362, 411, 584
Lsp1109I GCAGC 3 cut(s) 61, 280, 712
MaeI CTAG 2 cut(s) 768, 772
MaeIII GTNAC 1 cut(s) 224
MalI GATC 4 cut(s) 157, 516, 543, 686
MboI GATC 4 cut(s) 155, 514, 541, 684
MboII GAAGA 5 cut(s) 28, 131, 473, 497, 673
MhlI GDGCHC 2 cut(s) 343, 694
MluCI AATT 6 cut(s) 333, 419, 444, 450, 627, 713
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 655
MnlI CCTC 7 cut(s) 47, 62, 188, 209, 481, 593, 610
MroXI GAANNNNTTC 1 cut(s) 665
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 1 cut(s) 572
NdeII GATC 4 cut(s) 155, 514, 541, 684
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 6 cut(s) 134, 284, 431, 523, 656, 707
NlaIV GGNNCC 2 cut(s) 396, 415
NmeAIII GCCGAG 1 cut(s) 397
NspI RCATGY 3 cut(s) 284, 656, 707
PaeI GCATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 4 cut(s) 142, 260, 547, 742
PkrI GCNGC 4 cut(s) 76, 295, 593, 702
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
PspFI CCCAGC 2 cut(s) 58, 376
PspN4I GGNNCC 2 cut(s) 396, 415
PspPI GGNCC 4 cut(s) 127, 196, 394, 424
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 702
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 4 cut(s) 75, 294, 592, 701
Sau3AI GATC 4 cut(s) 155, 514, 541, 684
Sau96I GGNCC 4 cut(s) 127, 196, 394, 424
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 2 cut(s) 343, 694
SetI ASST 7 cut(s) 44, 378, 396, 415, 474, 569, 773
SfcI CTRYAG 2 cut(s) 229, 698
SinI GGWCC 3 cut(s) 127, 394, 424
SmiMI CAYNNNNRTG 1 cut(s) 191
SphI GCATGC 1 cut(s) 284
Sse9I AATT 6 cut(s) 333, 419, 444, 450, 627, 713
SsiI CCGC 2 cut(s) 125, 591
SspMI CTAG 2 cut(s) 768, 772
StyD4I CCNGG 1 cut(s) 570
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 720
TaqI TCGA 1 cut(s) 191
TasI AATT 6 cut(s) 333, 419, 444, 450, 627, 713
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 4 cut(s) 142, 260, 547, 742
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 282
TseI GCWGC 3 cut(s) 74, 293, 700
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 339
VpaK11BI GGWCC 3 cut(s) 127, 394, 424
XapI RAATTY 1 cut(s) 450
XceI RCATGY 3 cut(s) 284, 656, 707
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 2 cut(s) 768, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.