Rmu_sc0001547.1_g000003

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001547.1
Physical Location & Seq
Reverse (-)
19588 .. 22363
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001547.1_g000003.1.cds

Sequence Viewer

Length: 1794 bp
atgcaaggagtgctgggtttcaagtcttctattccagcatcaataaaccttcacagtcttacatcaagattgaggaggaagttttacatggaggatccaaatatggaagcaattcgggagttaagtgcagatgggatctgggcatatgatgcaacttgggctctagcagaagcagttgaaagagcaaggcttaaaaattctaccagtagatcctccaaagatggagctgtgcttcttagagagatattgcagaccagattcaaaggtttaagtggtgaaattcaatatgtgaatgggaaactgattccatcagaaccatttgagatagttaatgttattggaaaaggtgagatcaaaaggattggattttggccttgcaaagaagaagtaaaatccggaaaagggtcaccccagcagcaactcattcataatgggagaaatttagcttctataattgatcttgaaagaatcatatggcctggaggttccaggagggaattgagtagtagtgaaacacttaaactaaaaattggtgttccagtgagatttgggttcaaggaacttgttcgtgtcgagcatgatcttgaaaccaatacaactcatgtcactggcttctctatagacgtattcaaagcagcaataggagctttgccatatgaagtgccatacgagtttattccatttgaggatgccaatggaaatcttgcagggacttataatgatcttgtttaccaggtttatctcaagaaatacgatgctgttgttggagatgttacgatcacagagaacagatctcagtatgttgattttacaacaccatatacagacttgggtgtgggaatgttggtaccaaatgccaaggaaaacttgtggattttctttaaaccactatcaacatatctttggttaacaagtgctgctttctttatcctaaccagttttgttgtttggatcattgagcgtcctactaacaaagaattccagggcacagtaggggagcaaatcggaacacttttctggttctccttttctactcttgtgtttgcttatacggaaaagttgtcaaataatttggcaaagtttgtagtgatcatatgggtgtttgtagtgcttatattgtcatcaagttatactgcaactttagcatcaatgatgacggtcaaacagatagagttaaactcaagggggaactacataggttatcaatcgggttcattaggagttctagtgaacttaaatttgaaagcagcaaagtcatatcgttccgaggaagaatatattgatgctctatccaaaggaagcaagaatggtggggtttctgggattgttgacgaggttccgtacatcaatatcttccttgcaaagtattctgctgactactcgatgattaaaaccaggtctatcaccaatggttttgcctttgttttccctaaaggttcgaaattggttcacgatgtgtcgaggcaaattgaacgtctgagacaggaagaaaagcttctagagatggaaaagacctggtttcgtgaaaaaacaactctgaggtcggatgaggatatgacccagagtgatcccaatacgattgacctctatgactttcgtggtctgttccttattagtggggcatctttagctatttctcttttcttcttcgtagttttatccactagagttaggaatctgtttcgtatagagctgcaacgtttgagaactttcttctccttcatagtattcaatggaactgagcaaaactgcatgcaagttcctacgcaagtcattgtacatgctgtccattaa

Protein Analysis

597

Amino Acids

67.57

Weight (kDa)

8.47

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
Acc65I GGTACC 1 cut(s) 847
AccB1I GGYRCC 1 cut(s) 847
AccIII TCCGGA 1 cut(s) 395
AclI AACGTT 1 cut(s) 1699
AclWI GGATC 6 cut(s) 89, 102, 143, 204, 959, 1562
AcsI RAATTY 5 cut(s) 196, 279, 439, 977, 1237
AdeI CACNNNGTG 1 cut(s) 1456
AfaI GTAC 3 cut(s) 849, 1343, 1779
AfiI CCNNNNNNNGG 1 cut(s) 402
AjnI CCWGG 6 cut(s) 478, 488, 732, 981, 1394, 1514
AluBI AGCT 6 cut(s) 227, 446, 647, 1495, 1631, 1693
AluI AGCT 6 cut(s) 227, 446, 647, 1495, 1631, 1693
Alw26I GTCTC 1 cut(s) 1474
AlwI GGATC 6 cut(s) 89, 102, 143, 204, 959, 1562
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 2 cut(s) 371, 476
ApeKI GCWGC 5 cut(s) 415, 635, 917, 1247, 1693
ApoI RAATTY 5 cut(s) 196, 279, 439, 977, 1237
ArsI GACNNNNNNTTYG 2 cut(s) 1459, 1491
Asp700I GAANNNNTTC 3 cut(s) 111, 564, 1494
Asp718I GGTACC 1 cut(s) 847
AsuHPI GGTGA 4 cut(s) 287, 359, 399, 1396
AsuII TTCGAA 1 cut(s) 1439
BaeGI GKGCMC 1 cut(s) 989
BamHI GGATCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 5 cut(s) 427, 647, 904, 1259, 1680
BccI CCATC 4 cut(s) 125, 215, 316, 1498
BciT130I CCWGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
BclI TGATCA 1 cut(s) 1089
BcoDI GTCTC 1 cut(s) 1474
BfaI CTAG 4 cut(s) 164, 1226, 1499, 1665
BfmI CTRYAG 1 cut(s) 618
BglII AGATCT 1 cut(s) 791
BisI GCNGC 5 cut(s) 416, 636, 918, 1248, 1694
BlsI GCNGC 5 cut(s) 417, 637, 919, 1249, 1695
Bme1390I CCNGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
BmiI GGNNCC 4 cut(s) 96, 487, 849, 1338
BmrFI CCNGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
BmsI GCATC 7 cut(s) 47, 139, 679, 745, 1154, 1273, 1631
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 1163, 1195
BpmI CTGGAG 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 1439
BpuEI CTTGAG 2 cut(s) 728, 1165
BsaJI CCNNGG 3 cut(s) 858, 982, 1266
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 4 cut(s) 204, 539, 613, 936
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
BseDI CCNNGG 3 cut(s) 858, 982, 1266
BseGI GGATG 2 cut(s) 694, 1552
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMII CTCAG 4 cut(s) 809, 1469, 1529, 1731
BseNI ACTGG 4 cut(s) 204, 539, 613, 936
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 989
BseXI GCAGC 5 cut(s) 427, 647, 904, 1259, 1680
BseYI CCCAGC 2 cut(s) 13, 411
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 2 cut(s) 373, 478
BshNI GGYRCC 1 cut(s) 847
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 1474
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 2 cut(s) 373, 478
Bsp119I TTCGAA 1 cut(s) 1439
Bsp1286I GDGCHC 2 cut(s) 163, 989
Bsp13I TCCGGA 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 1777
BspANI GGCC 2 cut(s) 373, 478
BspCNI CTCAG 4 cut(s) 808, 1470, 1530, 1732
BspEI TCCGGA 1 cut(s) 395
BspLI GGNNCC 4 cut(s) 96, 487, 849, 1338
BspPI GGATC 6 cut(s) 89, 102, 143, 204, 959, 1562
BspT104I TTCGAA 1 cut(s) 1439
BspT107I GGYRCC 1 cut(s) 847
BsrGI TGTACA 1 cut(s) 1777
BsrI ACTGG 4 cut(s) 204, 539, 613, 936
BssECI CCNNGG 3 cut(s) 858, 982, 1266
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
Bst4CI ACNGT 3 cut(s) 56, 991, 1159
BstAPI GCANNNNNTGC 2 cut(s) 10, 149
BstAUI TGTACA 1 cut(s) 1777
BstBI TTCGAA 1 cut(s) 1439
BstC8I GCNNGC 1 cut(s) 1754
BstDEI CTNAG 5 cut(s) 236, 795, 1478, 1538, 1740
BstEII GGTNACC 1 cut(s) 405
BstF5I GGATG 2 cut(s) 694, 1552
BstMAI GTCTC 1 cut(s) 1474
BstMWI GCNNNNNNNGC 6 cut(s) 10, 149, 158, 644, 1142, 1628
BstNI CCWGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
BstNSI RCATGY 2 cut(s) 1756, 1784
BstPI GGTNACC 1 cut(s) 405
BstSCI CCNGG 6 cut(s) 478, 488, 732, 981, 1394, 1514
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 1 cut(s) 989
BstV1I GCAGC 5 cut(s) 427, 647, 904, 1259, 1680
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 4 cut(s) 94, 135, 209, 791
BstYI RGATCY 4 cut(s) 94, 135, 209, 791
BsuRI GGCC 2 cut(s) 373, 478
BtsCI GGATG 2 cut(s) 694, 1552
BtsIMutI CAGTG 2 cut(s) 546, 606
Cac8I GCNNGC 1 cut(s) 1754
CseI GACGC 1 cut(s) 950
CsiI ACCWGGT 3 cut(s) 732, 1394, 1514
Csp6I GTAC 3 cut(s) 848, 1342, 1778
CspCI CAANNNNNGTGG 2 cut(s) 1291, 1326
CviAII CATG 5 cut(s) 88, 578, 602, 1753, 1781
CviQI GTAC 3 cut(s) 848, 1342, 1778
DdeI CTNAG 5 cut(s) 236, 795, 1478, 1538, 1740
DraI TTTAAA 1 cut(s) 883
DraIII CACNNNGTG 1 cut(s) 1456
Eco130I CCWWGG 1 cut(s) 858
Eco24I GRGCYC 1 cut(s) 163
Eco91I GGTNACC 1 cut(s) 405
EcoO65I GGTNACC 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 977
EcoRII CCWGG 6 cut(s) 478, 488, 732, 981, 1394, 1514
EcoT14I CCWWGG 1 cut(s) 858
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 5 cut(s) 91, 581, 605, 1756, 1784
FalI AAGNNNNNCTT 6 cut(s) 851, 883, 904, 936, 1479, 1511
FaqI GGGAC 1 cut(s) 724
FatI CATG 5 cut(s) 87, 577, 601, 1752, 1780
FauNDI CATATG 4 cut(s) 145, 473, 655, 1094
FbaI TGATCA 1 cut(s) 1089
Fnu4HI GCNGC 5 cut(s) 416, 636, 918, 1248, 1694
FokI GGATG 2 cut(s) 701, 1559
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 5 cut(s) 416, 636, 918, 1248, 1694
FspBI CTAG 4 cut(s) 164, 1226, 1499, 1665
GluI GCNGC 5 cut(s) 416, 636, 918, 1248, 1694
GsaI CCCAGC 2 cut(s) 17, 415
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 373, 478
HapII CCGG 1 cut(s) 396
HgaI GACGC 1 cut(s) 950
Hin1II CATG 5 cut(s) 91, 581, 605, 1756, 1784
HincII GTYRAC 2 cut(s) 909, 1330
HindII GTYRAC 2 cut(s) 909, 1330
HindIII AAGCTT 1 cut(s) 1493
HinfI GANTC 4 cut(s) 258, 304, 468, 1675
HpaI GTTAAC 1 cut(s) 909
HpaII CCGG 1 cut(s) 396
HphI GGTGA 4 cut(s) 287, 359, 399, 1396
Hpy166II GTNNAC 5 cut(s) 730, 909, 1231, 1330, 1450
Hpy188I TCNGA 6 cut(s) 313, 1007, 1267, 1479, 1539, 1546
Hpy188III TCNNGA 9 cut(s) 66, 116, 396, 461, 584, 745, 1451, 1499, 1523
Hpy8I GTNNAC 5 cut(s) 730, 909, 1231, 1330, 1450
HpyAV CCTTC 2 cut(s) 59, 1729
HpyCH4III ACNGT 3 cut(s) 56, 991, 1159
HpyCH4IV ACGT 3 cut(s) 624, 1474, 1699
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 149, 158, 644, 1142, 1628
HpyF3I CTNAG 5 cut(s) 236, 795, 1478, 1538, 1740
HpySE526I ACGT 3 cut(s) 624, 1474, 1699
Hsp92II CATG 5 cut(s) 91, 581, 605, 1756, 1784
Kpn2I TCCGGA 1 cut(s) 395
KpnI GGTACC 1 cut(s) 851
Ksp22I TGATCA 1 cut(s) 1089
KspAI GTTAAC 1 cut(s) 909
LmnI GCTCC 3 cut(s) 224, 644, 997
Lsp1109I GCAGC 5 cut(s) 427, 647, 904, 1259, 1680
LweI GCATC 7 cut(s) 47, 139, 679, 745, 1154, 1273, 1631
MabI ACCWGGT 3 cut(s) 732, 1394, 1514
MaeI CTAG 4 cut(s) 164, 1226, 1499, 1665
MaeII ACGT 3 cut(s) 624, 1474, 1699
MaeIII GTNAC 3 cut(s) 405, 604, 772
MboII GAAGA 8 cut(s) 18, 395, 1283, 1345, 1499, 1636, 1639, 1705
MflI RGATCY 4 cut(s) 94, 135, 209, 791
MhlI GDGCHC 2 cut(s) 163, 989
MmeI TCCRAC 2 cut(s) 745, 1524
MroI TCCGGA 1 cut(s) 395
MroXI GAANNNNTTC 3 cut(s) 111, 564, 1494
MslI CAYNNNNRTG 1 cut(s) 1097
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
MvaI CCWGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
MwoI GCNNNNNNNGC 6 cut(s) 10, 149, 158, 644, 1142, 1628
NdeI CATATG 4 cut(s) 145, 473, 655, 1094
NlaIII CATG 5 cut(s) 91, 581, 605, 1756, 1784
NlaIV GGNNCC 4 cut(s) 96, 487, 849, 1338
NmuCI GTSAC 2 cut(s) 405, 604
NspI RCATGY 2 cut(s) 1756, 1784
NspV TTCGAA 1 cut(s) 1439
PaeI GCATGC 1 cut(s) 1756
PdmI GAANNNNTTC 3 cut(s) 111, 564, 1494
PfeI GAWTC 4 cut(s) 258, 304, 468, 1675
PfoI TCCNGGA 1 cut(s) 488
PkrI GCNGC 5 cut(s) 417, 637, 919, 1249, 1695
PsiI TTATAA 1 cut(s) 717
Psp1406I AACGTT 1 cut(s) 1699
Psp6I CCWGG 6 cut(s) 478, 488, 732, 981, 1394, 1514
PspEI GGTNACC 1 cut(s) 405
PspFI CCCAGC 2 cut(s) 13, 411
PspGI CCWGG 6 cut(s) 478, 488, 732, 981, 1394, 1514
PspN4I GGNNCC 4 cut(s) 96, 487, 849, 1338
PsuI RGATCY 4 cut(s) 94, 135, 209, 791
RsaI GTAC 3 cut(s) 849, 1343, 1779
RsaNI GTAC 3 cut(s) 848, 1342, 1778
RseI CAYNNNNRTG 1 cut(s) 1097
SatI GCNGC 5 cut(s) 416, 636, 918, 1248, 1694
ScrFI CCNGG 6 cut(s) 480, 490, 734, 983, 1396, 1516
SduI GDGCHC 2 cut(s) 163, 989
SexAI ACCWGGT 3 cut(s) 732, 1394, 1514
SfaNI GCATC 7 cut(s) 47, 139, 679, 745, 1154, 1273, 1631
SfcI CTRYAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 1439
SmiMI CAYNNNNRTG 1 cut(s) 1097
SmlI CTYRAG 2 cut(s) 743, 1180
SmoI CTYRAG 2 cut(s) 743, 1180
SphI GCATGC 1 cut(s) 1756
SspMI CTAG 4 cut(s) 164, 1226, 1499, 1665
StyD4I CCNGG 6 cut(s) 478, 488, 732, 981, 1394, 1514
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 3 cut(s) 56, 991, 1159
TaiI ACGT 3 cut(s) 627, 1477, 1702
TaqI TCGA 4 cut(s) 573, 1382, 1439, 1460
TatI WGTACW 1 cut(s) 1777
TfiI GAWTC 4 cut(s) 258, 304, 468, 1675
TscAI CASTG 2 cut(s) 546, 613
TseFI GTSAC 2 cut(s) 405, 604
TseI GCWGC 5 cut(s) 415, 635, 917, 1247, 1693
Tsp45I GTSAC 2 cut(s) 405, 604
TspDTI ATGAA 4 cut(s) 416, 672, 1203, 1711
TspGWI ACGGA 2 cut(s) 1067, 1329
TspRI CASTG 2 cut(s) 546, 613
XapI RAATTY 5 cut(s) 196, 279, 439, 977, 1237
XbaI TCTAGA 1 cut(s) 1498
XceI RCATGY 2 cut(s) 1756, 1784
XmnI GAANNNNTTC 3 cut(s) 111, 564, 1494
XspI CTAG 4 cut(s) 164, 1226, 1499, 1665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.