Rh5DG379600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000294
Physical Location & Seq
Forward (+)
57755467 .. 57756278
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG379600.1

Sequence Viewer

Length: 384 bp
ATGGCAAAAGTAGGGACAATGCACTTATGTGCTAAATTAGAGCCAATAGTTAAAGCTCAAAGGGAAACAAAAGGAAGTCATTTAACCTATCCTCACCCTTGTCAAGGATGTTACCCTTCTCTCTATTGGAGATCAGTCACAATGAGTTCAGTCTCCTACCGTGGACCTTCGACATTCAAGGTTATCATCATCCCTAGTCGAGGATGTCGTCTTCATCCACATAGGACCTCCGTAGTTCAACCTTCAAACTACCATAGTGATGGCCTATCACATATAGAAACTCACCCCCACACAACGAGGTTAACTTTTTTTACATCCACTCTTGGTCTTTCATTAAGAACCACCTACTCAAGCCTAGATTCACCAAATTCTCCCTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.2

Weight (kDa)

9.65

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 104, 200
AgsI TTSAA 3 cut(s) 178, 239, 246
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 157
AoxI GGCC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 164, 225
AsuHPI GGTGA 3 cut(s) 86, 275, 354
AvaII GGWCC 2 cut(s) 164, 225
BbsI GAAGAC 1 cut(s) 203
BccI CCATC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 195, 356
Bme18I GGWCC 2 cut(s) 164, 225
BmgT120I GGNCC 2 cut(s) 164, 225
BpiI GAAGAC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 200
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 5 cut(s) 113, 189, 209, 214, 314
BseLI CCNNNNNNNGG 2 cut(s) 104, 200
BshFI GGCC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 104, 200
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 131
BspANI GGCC 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 160
BstENI CCTNNNNNAGG 2 cut(s) 102, 198
BstF5I GGATG 5 cut(s) 113, 189, 209, 214, 314
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 5 cut(s) 113, 189, 209, 214, 314
Cfr13I GGNCC 2 cut(s) 164, 225
CviJI RGCY 4 cut(s) 43, 56, 264, 354
CviKI_1 RGCY 4 cut(s) 43, 56, 264, 354
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 164, 225
EcoNI CCTNNNNNAGG 2 cut(s) 102, 198
EcoO109I RGGNCCY 1 cut(s) 225
FaiI YATR 6 cut(s) 28, 222, 255, 273, 275, 379
FaqI GGGAC 1 cut(s) 28
FokI GGATG 5 cut(s) 120, 176, 201, 216, 301
FspBI CTAG 2 cut(s) 195, 356
HaeIII GGCC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 1 cut(s) 359
HpaI GTTAAC 1 cut(s) 303
HphI GGTGA 3 cut(s) 86, 275, 354
Hpy166II GTNNAC 2 cut(s) 164, 303
Hpy8I GTNNAC 2 cut(s) 164, 303
HpyAV CCTTC 3 cut(s) 126, 177, 252
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 22
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 131
MaeI CTAG 2 cut(s) 195, 356
MaeIII GTNAC 2 cut(s) 110, 136
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 1 cut(s) 203
MluCI AATT 2 cut(s) 35, 367
MnlI CCTC 4 cut(s) 102, 194, 238, 291
MseI TTAA 4 cut(s) 51, 83, 302, 335
MslI CAYNNNNRTG 2 cut(s) 27, 258
NdeII GATC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 225
PspPI GGNCC 2 cut(s) 164, 225
PspPPI RGGWCCY 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 27, 258
SaqAI TTAA 4 cut(s) 51, 83, 302, 335
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 2 cut(s) 164, 225
SetI ASST 8 cut(s) 58, 89, 169, 183, 230, 244, 302, 347
SinI GGWCC 2 cut(s) 164, 225
SmiMI CAYNNNNRTG 2 cut(s) 27, 258
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 2 cut(s) 35, 367
SspMI CTAG 2 cut(s) 195, 356
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 170, 199
TasI AATT 2 cut(s) 35, 367
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 4 cut(s) 51, 83, 302, 335
Tru9I TTAA 4 cut(s) 51, 83, 302, 335
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 203, 321
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 164, 225
XagI CCTNNNNNAGG 2 cut(s) 102, 198
XapI RAATTY 1 cut(s) 367
XspI CTAG 2 cut(s) 195, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.