RLG00000029110

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
33131227 .. 33131538
312 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029110

Sequence Viewer

Length: 312 bp
ATGGAGTTCCCTTGGAAGAAGCAAACCATCCTATGCCTCACCTTCTTTTGCCTCCTGCTGGGTGATTTCTATGCTGCAACTGACGAGAAAGTGCATCATAATACACCCATTATCACGGAAGAAGCAATCCATGTGGGCGTGATTCTTGATATGAGATCAAGAGAAGGAAGTATTGTCCTCAGTTGCATTTCGATGGCCCTCTCTGATTTCTACTATCAGCATAGTAACTACAGCACACGAGTCATTTTACACAGCAGGGATTCAAAAGGAAACCCACTGCATGCTGTTTGGGCTGGTGAGTCCCGTTTATGA

Protein Analysis

104

Amino Acids

11.77

Weight (kDa)

6.27

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 264
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 3 cut(s) 31, 74, 308
BauI CACGAG 1 cut(s) 237
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 35, 187
BfmI CTRYAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 196
BmsI GCATC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 197
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 155
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 155
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 27
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 196
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 2 cut(s) 131, 281
CviJI RGCY 2 cut(s) 197, 293
CviKI_1 RGCY 2 cut(s) 197, 293
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 134, 284
FaiI YATR 8 cut(s) 34, 72, 99, 132, 152, 222, 282, 310
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 130, 280
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 134, 284
HinfI GANTC 4 cut(s) 142, 240, 260, 299
HphI GGTGA 3 cut(s) 31, 74, 308
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 146, 159
HpyAV CCTTC 2 cut(s) 52, 158
HpyCH4V TGCA 4 cut(s) 77, 94, 186, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 2 cut(s) 134, 284
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 44, 68, 241, 279
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 2 cut(s) 28, 131
MlyI GAGTC 2 cut(s) 249, 308
MnlI CCTC 4 cut(s) 47, 62, 188, 209
MslI CAYNNNNRTG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 134, 284
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 142, 260
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 248, 307
PpsI GAGTC 2 cut(s) 248, 307
PspFI CCCAGC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 191
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 2 cut(s) 249, 308
SetI ASST 1 cut(s) 44
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 191
SphI GCATGC 1 cut(s) 284
StyI CCWWGG 1 cut(s) 11
TaqI TCGA 1 cut(s) 191
TfiI GAWTC 2 cut(s) 142, 260
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 282
XceI RCATGY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.