Rmu_sc0034500.1_g000001

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034500.1
Physical Location & Seq
Reverse (-)
1 .. 2208
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034500.1_g000001.1.cds

Sequence Viewer

Length: 1257 bp
atgaaaggttccaagaagcaattgatgagtagtgaaaaaaaactgagaattggggttccagcaaaagtagggtttaaggaatttgtgcgtgtggaacatgatattgaaaccaatacaactcatatcactggcttctcgatagacgtgttcaaagcagcaatcagaggtttaccatacaaagtgcattatgagtttattccatttgaggattcccacggaaatatggccgggacttataacgatctggtccagcaagtttatctcaagaaatacgatgctgttgttggagatacgacaatctcagcgaacagatctttatatgtggattttacaataccgtatactgacttgggtgtgggagtgttggtaagaaaagatgaggaaaacatgtgggttttcttgaaacctctttcagcagatctttggataacaagtgctgctttctttatcctgacgggattagttgtgtggataattgagcgccctattaaccaagaatttcaaggctctctatcgcagcaaatcggaacgatattctggttctccttctcaacccttgtttttgctcatagggagaagttgttaaacaacgtgacaaagtttgtagtgatcatatgggtgtttgtagtgcttatactgagctccagttacactgcaaatctagcttcaatgatgaccatgaaacagatacaaatgaactcaaaagtgaactacatagtttatcaaatcagttcattcaccaaactaggcttcatagactttacttgcaaaggactcaagaaatttgatcagacagaagaagcatatgttgatgctttatcaagaggcagtacgcatggtggtgtttctgctatcattgacgagattccttacatcaaaatcttcctagcaaagtatccctccaagtactccatgattaaaaccaagtctactaccaatggttttggctttgttttccctaaaggttccaaattggtccatgatatttcaaggcaaattgaaattttgagagaagaaggaaagcttgtagagatggaagaggcttggtttcatagtataaaaactgatctcatgtttgacgacacaacaagtgatccgaatccactcaatctccacagcttccggggtttattcctcatcagcggcgtttcctcagttgttgcacttatcttgttcacaattttcttggtgaaagagaaatggcatgtcgtgaagacattcaaagttggatatgtgatccgagcacaactgcagcat

Protein Analysis

419

Amino Acids

47.7

Weight (kDa)

9.01

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AccI GTMKAC 2 cut(s) 341, 929
AciI CCGC 1 cut(s) 1143
AclWI GGATC 2 cut(s) 1088, 1231
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 4 cut(s) 80, 497, 782, 1002
AfaI GTAC 2 cut(s) 832, 908
AflIII ACRYGT 2 cut(s) 144, 387
AgsI TTSAA 8 cut(s) 107, 151, 403, 503, 669, 990, 1001, 1222
AjiI CACGTC 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 4 cut(s) 642, 665, 1024, 1119
AluI AGCT 4 cut(s) 642, 665, 1024, 1119
Alw21I GWGCWC 2 cut(s) 644, 1246
AlwI GGATC 2 cut(s) 1088, 1231
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 4 cut(s) 155, 437, 517, 1252
ApoI RAATTY 4 cut(s) 80, 497, 782, 1002
Asp700I GAANNNNTTC 1 cut(s) 1217
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 247, 976
AsuC2I CCSGG 2 cut(s) 229, 1124
AsuHPI GGTGA 2 cut(s) 730, 1201
AvaII GGWCC 2 cut(s) 247, 976
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 1220
Bbv12I GWGCWC 2 cut(s) 644, 1246
BbvI GCAGC 3 cut(s) 167, 424, 529
BccI CCATC 1 cut(s) 1027
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 2 cut(s) 609, 787
BcnI CCSGG 2 cut(s) 229, 1124
BfaI CTAG 3 cut(s) 662, 746, 887
BfmI CTRYAG 1 cut(s) 1250
BfoI RGCGCY 1 cut(s) 484
BfuI GTATCC 1 cut(s) 906
BglII AGATCT 2 cut(s) 311, 418
BisI GCNGC 5 cut(s) 156, 438, 518, 1144, 1253
BlsI GCNGC 5 cut(s) 157, 439, 519, 1145, 1254
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 2 cut(s) 229, 1124
Bme18I GGWCC 2 cut(s) 247, 976
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 247, 976
BmiI GGNNCC 3 cut(s) 10, 57, 967
BmrFI CCNGG 2 cut(s) 229, 1124
BmsI GCATC 2 cut(s) 265, 802
BpiI GAAGAC 1 cut(s) 1220
BpmI CTGGAG 1 cut(s) 628
BpuEI CTTGAG 2 cut(s) 248, 761
BpuMI CCSGG 2 cut(s) 229, 1124
BsaBI GATNNNNATC 1 cut(s) 1098
BsaJI CCNNGG 2 cut(s) 214, 1123
BsaXI ACNNNNNCTCC 6 cut(s) 351, 381, 566, 596, 1095, 1125
Bse1I ACTGG 2 cut(s) 133, 645
Bse8I GATNNNNATC 1 cut(s) 1098
BseDI CCNNGG 2 cut(s) 214, 1123
BseJI GATNNNNATC 1 cut(s) 1098
BseMII CTCAG 4 cut(s) 35, 315, 629, 1167
BseNI ACTGG 2 cut(s) 133, 645
BseXI GCAGC 3 cut(s) 167, 424, 529
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 644, 1246
BsiSI CCGG 2 cut(s) 228, 1123
BslFI GGGAC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 644, 1246
Bsp143I GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
BspACI CCGC 1 cut(s) 1143
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 4 cut(s) 36, 314, 630, 1166
BspLI GGNNCC 3 cut(s) 10, 57, 967
BspMAI CTGCAG 1 cut(s) 1254
BspPI GGATC 2 cut(s) 1088, 1231
BsrI ACTGG 2 cut(s) 133, 645
BssECI CCNNGG 2 cut(s) 214, 1123
BssMI GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
BssNAI GTATAC 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 1032
BstDEI CTNAG 4 cut(s) 44, 301, 638, 1153
BstDSI CCRYGG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 8 cut(s) 244, 314, 421, 612, 790, 1069, 1096, 1239
BstMBI GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNSI RCATGY 2 cut(s) 391, 1208
BstSCI CCNGG 2 cut(s) 227, 1122
BstSFI CTRYAG 1 cut(s) 1250
BstV1I GCAGC 3 cut(s) 167, 424, 529
BstV2I GAAGAC 1 cut(s) 1220
BstX2I RGATCY 2 cut(s) 311, 418
BstYI RGATCY 2 cut(s) 311, 418
BstZ17I GTATAC 1 cut(s) 342
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 126, 651
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 247, 976
Csp6I GTAC 2 cut(s) 831, 907
CviAII CATG 8 cut(s) 98, 388, 679, 836, 913, 980, 1072, 1205
CviQI GTAC 2 cut(s) 831, 907
DdeI CTNAG 4 cut(s) 44, 301, 638, 1153
DpnI GATC 8 cut(s) 243, 313, 420, 611, 789, 1068, 1095, 1238
DpnII GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 1032
Ecl136II GAGCTC 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 247, 976
Eco53kI GAGCTC 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 644
FaeI CATG 8 cut(s) 101, 391, 682, 839, 916, 983, 1075, 1208
FalI AAGNNNNNCTT 4 cut(s) 424, 456, 1008, 1040
FaqI GGGAC 1 cut(s) 244
FatI CATG 8 cut(s) 97, 387, 678, 835, 912, 979, 1071, 1204
FauNDI CATATG 2 cut(s) 614, 805
FbaI TGATCA 2 cut(s) 609, 787
FblI GTMKAC 2 cut(s) 341, 929
Fnu4HI GCNGC 5 cut(s) 156, 438, 518, 1144, 1253
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 5 cut(s) 156, 438, 518, 1144, 1253
FspBI CTAG 3 cut(s) 662, 746, 887
GlaI GCGC 1 cut(s) 482
GluI GCNGC 5 cut(s) 156, 438, 518, 1144, 1253
GsuI CTGGAG 1 cut(s) 628
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 228, 1123
HhaI GCGC 1 cut(s) 483
Hin1II CATG 8 cut(s) 101, 391, 682, 839, 916, 983, 1075, 1208
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 4 cut(s) 209, 774, 865, 1099
HpaII CCGG 2 cut(s) 228, 1123
HphI GGTGA 2 cut(s) 730, 1201
Hpy166II GTNNAC 5 cut(s) 170, 342, 709, 930, 1176
Hpy188I TCNGA 5 cut(s) 164, 527, 792, 1098, 1241
Hpy188III TCNNGA 7 cut(s) 136, 265, 400, 451, 778, 822, 1210
Hpy8I GTNNAC 5 cut(s) 170, 342, 709, 930, 1176
HpyAV CCTTC 2 cut(s) 556, 1010
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4IV ACGT 2 cut(s) 144, 591
HpyCH4V TGCA 5 cut(s) 184, 656, 768, 1163, 1252
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 4 cut(s) 44, 301, 638, 1153
HpySE526I ACGT 2 cut(s) 144, 591
Hsp92II CATG 8 cut(s) 101, 391, 682, 839, 916, 983, 1075, 1208
HspAI GCGC 1 cut(s) 481
Ksp22I TGATCA 2 cut(s) 609, 787
Kzo9I GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
LmnI GCTCC 1 cut(s) 647
LpnPI CCDG 9 cut(s) 72, 114, 230, 241, 263, 464, 523, 658, 1136
Lsp1109I GCAGC 3 cut(s) 167, 424, 529
LweI GCATC 2 cut(s) 265, 802
MaeI CTAG 3 cut(s) 662, 746, 887
MaeII ACGT 2 cut(s) 144, 591
MaeIII GTNAC 2 cut(s) 592, 647
MalI GATC 8 cut(s) 243, 313, 420, 611, 789, 1068, 1095, 1238
MboI GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
MboII GAAGA 5 cut(s) 809, 874, 1025, 1049, 1225
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 311, 418
MhlI GDGCHC 2 cut(s) 644, 1246
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 2 cut(s) 265, 1207
MnlI CCTC 9 cut(s) 158, 199, 373, 417, 818, 910, 1033, 1145, 1162
MroXI GAANNNNTTC 1 cut(s) 1217
MseI TTAA 4 cut(s) 75, 489, 584, 918
MslI CAYNNNNRTG 2 cut(s) 617, 840
MspA1I CMGCKG 1 cut(s) 1143
MspI CCGG 2 cut(s) 228, 1123
MspR9I CCNGG 2 cut(s) 229, 1124
MunI CAATTG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 662
NciI CCSGG 2 cut(s) 229, 1124
NdeI CATATG 2 cut(s) 614, 805
NdeII GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
NlaIII CATG 8 cut(s) 101, 391, 682, 839, 916, 983, 1075, 1208
NlaIV GGNNCC 3 cut(s) 10, 57, 967
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 2 cut(s) 391, 1208
PciI ACATGT 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 1217
PfeI GAWTC 3 cut(s) 209, 865, 1099
PkrI GCNGC 5 cut(s) 157, 439, 519, 1145, 1254
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PscI ACATGT 1 cut(s) 387
PsiI TTATAA 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 10, 57, 967
PspPI GGNCC 2 cut(s) 247, 976
PstI CTGCAG 1 cut(s) 1254
PsuI RGATCY 2 cut(s) 311, 418
RsaI GTAC 2 cut(s) 832, 908
RsaNI GTAC 2 cut(s) 831, 907
RseI CAYNNNNRTG 2 cut(s) 617, 840
SacI GAGCTC 1 cut(s) 644
SaqAI TTAA 4 cut(s) 75, 489, 584, 918
SatI GCNGC 5 cut(s) 156, 438, 518, 1144, 1253
Sau3AI GATC 8 cut(s) 241, 311, 418, 609, 787, 1066, 1093, 1236
Sau96I GGNCC 2 cut(s) 247, 976
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 2 cut(s) 229, 1124
SduI GDGCHC 2 cut(s) 644, 1246
SfaNI GCATC 2 cut(s) 265, 802
SfcI CTRYAG 1 cut(s) 1250
SinI GGWCC 2 cut(s) 247, 976
SmiMI CAYNNNNRTG 2 cut(s) 617, 840
SmlI CTYRAG 2 cut(s) 263, 776
SmoI CTYRAG 2 cut(s) 263, 776
SsiI CCGC 1 cut(s) 1143
SspMI CTAG 3 cut(s) 662, 746, 887
SstI GAGCTC 1 cut(s) 644
StyD4I CCNGG 2 cut(s) 227, 1122
TaaI ACNGT 1 cut(s) 339
TaiI ACGT 2 cut(s) 147, 594
TaqI TCGA 1 cut(s) 137
TatI WGTACW 1 cut(s) 906
TauI GCSGC 1 cut(s) 1146
TfiI GAWTC 3 cut(s) 209, 865, 1099
Tru1I TTAA 4 cut(s) 75, 489, 584, 918
Tru9I TTAA 4 cut(s) 75, 489, 584, 918
TscAI CASTG 2 cut(s) 133, 658
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 4 cut(s) 155, 437, 517, 1252
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 6 cut(s) 17, 695, 710, 723, 742, 1040
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 133, 658
VpaK11BI GGWCC 2 cut(s) 247, 976
XapI RAATTY 4 cut(s) 80, 497, 782, 1002
XceI RCATGY 2 cut(s) 391, 1208
XmiI GTMKAC 2 cut(s) 341, 929
XmnI GAANNNNTTC 1 cut(s) 1217
XspI CTAG 3 cut(s) 662, 746, 887
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.